Wall clock time and date at job start Mon Mar 30 2020 00:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33637 * 122.74872 * 2 1 4 4 S 1.76200 * 107.92317 * 179.76049 * 3 2 1 5 5 C 1.70981 * 90.28196 * 0.28347 * 4 3 2 6 6 C 1.50705 * 124.91539 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46609 * 269.69206 * 6 5 4 8 8 H 1.08998 * 110.64547 * 51.85234 * 7 6 5 9 9 C 1.54591 * 110.72417 * 288.50159 * 7 6 5 10 10 C 1.54002 * 105.14001 * 219.68930 * 9 7 6 11 11 N 1.47900 * 107.05481 * 358.77246 * 10 9 7 12 12 C 1.46908 * 110.99815 * 145.84530 * 11 10 9 13 13 C 1.50695 * 109.46810 * 52.60651 * 12 11 10 14 14 H 1.08007 * 120.00465 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99942 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00004 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99945 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47260 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46900 * 119.99975 * 17 15 13 20 20 H 1.48500 * 109.47388 * 240.00019 * 17 15 13 21 21 C 1.48531 * 105.82143 * 25.33289 * 11 10 9 22 22 N 1.29023 * 110.16773 * 359.71258 * 5 4 3 23 23 H 1.09006 * 109.47329 * 270.02659 * 1 2 3 24 24 H 1.09002 * 109.47394 * 30.02553 * 1 2 3 25 25 H 1.09005 * 109.47315 * 150.02406 * 1 2 3 26 26 H 1.08000 * 126.03870 * 359.97284 * 3 2 1 27 27 H 1.09002 * 109.46922 * 149.69686 * 6 5 4 28 28 H 1.08990 * 109.46991 * 29.69396 * 6 5 4 29 29 H 1.09004 * 110.31234 * 338.60094 * 9 7 6 30 30 H 1.09003 * 110.31128 * 100.77452 * 9 7 6 31 31 H 1.08993 * 109.91860 * 118.13167 * 10 9 7 32 32 H 1.09006 * 109.91748 * 239.23020 * 10 9 7 33 33 H 1.08995 * 109.46865 * 172.60370 * 12 11 10 34 34 H 1.08999 * 109.47057 * 292.60920 * 12 11 10 35 35 H 0.96993 * 120.00024 * 179.97438 * 16 15 13 36 36 H 1.09001 * 110.67185 * 202.35127 * 21 11 10 37 37 H 1.09004 * 110.66470 * 79.22703 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6731 0.0070 5 6 3.5039 -0.9819 0.0008 6 6 4.4835 -2.1272 0.0020 7 6 4.8153 -2.5159 -1.4401 8 1 5.1221 -1.6409 -2.0131 9 6 3.6108 -3.2175 -2.1085 10 6 4.2226 -4.3550 -2.9473 11 7 5.6901 -4.2745 -2.7824 12 6 6.2962 -5.6126 -2.8014 13 6 5.8448 -6.3509 -4.0352 14 1 5.1745 -5.8740 -4.7350 15 6 6.2868 -7.6356 -4.2702 16 7 7.1019 -8.2169 -3.4173 17 14 5.7268 -8.5510 -5.7991 18 1 4.8183 -7.6832 -6.5908 19 1 6.9096 -8.9098 -6.6223 20 1 5.0078 -9.7876 -5.4003 21 6 5.9147 -3.6070 -1.4747 22 7 2.2199 -1.1084 0.0004 23 1 -0.3634 0.0005 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.8391 2.1308 -0.0004 27 1 4.0431 -2.9813 0.5164 28 1 5.3957 -1.8244 0.5158 29 1 2.9415 -3.6244 -1.3505 30 1 3.0752 -2.5191 -2.7517 31 1 3.8606 -5.3179 -2.5872 32 1 3.9563 -4.2272 -3.9966 33 1 7.3821 -5.5195 -2.8106 34 1 5.9862 -6.1645 -1.9140 35 1 7.4125 -9.1208 -3.5824 36 1 6.9061 -3.1555 -1.4384 37 1 5.7821 -4.3129 -0.6547 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933126693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:03 Heat of formation + Delta-G solvation = 35.358867 kcal Electronic energy + Delta-G solvation = -17592.964121 eV Core-core repulsion = 14882.432156 eV Total energy + Delta-G solvation = -2710.531966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02264 -38.31252 -34.25066 -32.64671 -31.17915 -29.22484 -27.89992 -27.37951 -25.56258 -22.74219 -22.40710 -20.11786 -19.82162 -19.55929 -17.64992 -16.08278 -15.87535 -15.28753 -15.10229 -14.69297 -14.00152 -13.81157 -13.63250 -13.14513 -12.87309 -12.80144 -12.57216 -12.49973 -11.88447 -11.72776 -11.46770 -11.43398 -10.98168 -10.71866 -10.58797 -10.43267 -10.37077 -10.06928 -9.84772 -9.65091 -9.46983 -9.07328 -8.75831 -8.45608 -7.27299 -6.02710 -4.03799 0.61585 1.27806 1.65946 2.69217 3.31619 3.38887 3.44029 3.95237 4.44018 4.72345 4.86690 4.97032 5.04143 5.08596 5.31621 5.32370 5.37765 5.42615 5.50343 5.61380 5.72436 5.78991 5.82487 5.98665 6.10706 6.19146 6.34242 6.38867 6.56162 6.79419 6.80912 7.24384 7.41376 7.69714 7.78102 8.01901 8.22832 8.53188 9.04271 9.60693 11.08734 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039019 B = 0.003675 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.425465 B = 7616.568481 C = 8051.291262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.070 3.930 3 C -0.274 4.274 4 S 0.109 5.891 5 C 0.075 3.925 6 C -0.040 4.040 7 C -0.084 4.084 8 H 0.079 0.921 9 C -0.122 4.122 10 C 0.052 3.948 11 N -0.517 5.517 12 C 0.184 3.816 13 C -0.512 4.512 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.041 3.959 22 N -0.471 5.471 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.173 0.827 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.032 0.968 34 H -0.007 1.007 35 H 0.261 0.739 36 H 0.072 0.928 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 18.305 9.054 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.413 4.413 4 S 0.364 5.636 5 C -0.204 4.204 6 C -0.081 4.081 7 C -0.105 4.105 8 H 0.098 0.902 9 C -0.160 4.160 10 C -0.076 4.076 11 N -0.242 5.242 12 C 0.058 3.942 13 C -0.550 4.550 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.088 4.088 22 N -0.186 5.186 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.190 0.810 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.011 0.989 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.108 18.444 8.659 21.929 hybrid contribution -1.471 -1.016 -0.163 1.796 sum -9.580 17.428 8.496 21.626 Atomic orbital electron populations 1.20354 0.87299 1.03360 1.02792 1.20339 0.98246 0.86617 1.01054 1.26731 0.95191 1.03783 1.15598 1.84006 1.07454 1.03690 1.68450 1.27136 0.94026 0.98030 1.01203 1.20440 0.95074 0.93646 0.98933 1.22080 0.96635 0.98899 0.92839 0.90243 1.22497 0.96740 0.97752 0.99015 1.22603 0.89146 0.96396 0.99437 1.64837 1.09243 1.23110 1.26994 1.19901 0.95408 0.82503 0.96403 1.21252 1.28464 0.98350 1.06968 0.91845 1.24993 0.95173 0.97549 0.96848 1.69967 1.33510 1.14158 1.36078 0.86455 0.78500 0.79586 0.82986 1.19664 1.20969 1.21087 1.23194 0.97598 0.95059 0.92945 1.66153 1.04535 1.31286 1.16582 0.90772 0.90885 0.90458 0.80963 0.88595 0.89445 0.91538 0.92383 0.93531 0.91491 0.94983 0.98931 0.92976 0.90910 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.31 36.00 0.37 -0.30 16 2 C 0.07 0.80 6.74 -84.23 -0.57 0.23 16 3 C -0.27 -2.73 11.13 29.12 0.32 -2.41 16 4 S 0.11 1.13 23.18 -107.50 -2.49 -1.36 16 5 C 0.07 0.94 6.34 -13.46 -0.09 0.85 16 6 C -0.04 -0.49 5.21 -27.88 -0.15 -0.63 16 7 C -0.08 -1.24 3.03 -88.76 -0.27 -1.51 16 8 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 9 C -0.12 -2.00 6.21 -25.37 -0.16 -2.16 16 10 C 0.05 1.07 5.47 -2.75 -0.02 1.06 16 11 N -0.52 -11.46 5.39 -231.89 -1.25 -12.71 16 12 C 0.18 4.87 4.76 -4.97 -0.02 4.85 16 13 C -0.51 -14.60 8.42 -34.44 -0.29 -14.89 16 14 H 0.06 1.79 6.84 -52.48 -0.36 1.43 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 17 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.04 0.72 6.00 -1.90 -0.01 0.71 16 22 N -0.47 -6.43 10.53 -8.06 -0.08 -6.51 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 27 H 0.10 1.22 7.95 -51.93 -0.41 0.81 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.08 7.72 -51.93 -0.40 0.68 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 1.03 7.59 -51.93 -0.39 0.63 16 32 H 0.07 1.40 7.73 -51.93 -0.40 0.99 16 33 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 34 H -0.01 -0.20 7.89 -51.93 -0.41 -0.61 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.04 0.71 7.76 -51.93 -0.40 0.30 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -31.34 317.28 -10.02 -41.35 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -5.72 Total: -3.51 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.97 Total: -12.70 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.60 Total: -45.42 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.49 Total: -1.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.34 -10.02 -41.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933126693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.713 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds