Wall clock time and date at job start Mon Mar 30 2020 00:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33637 * 122.74872 * 2 1 4 4 S 1.76200 * 107.92317 * 179.76049 * 3 2 1 5 5 C 1.70981 * 90.28196 * 0.28347 * 4 3 2 6 6 C 1.50705 * 124.91539 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46609 * 269.69206 * 6 5 4 8 8 H 1.08998 * 110.64547 * 51.85234 * 7 6 5 9 9 C 1.54591 * 110.72417 * 288.50159 * 7 6 5 10 10 C 1.54002 * 105.14001 * 219.68930 * 9 7 6 11 11 N 1.47900 * 107.05481 * 358.77246 * 10 9 7 12 12 C 1.46908 * 110.99815 * 145.84530 * 11 10 9 13 13 C 1.50695 * 109.46810 * 52.60651 * 12 11 10 14 14 H 1.08007 * 120.00465 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99942 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00004 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99945 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47260 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46900 * 119.99975 * 17 15 13 20 20 H 1.48500 * 109.47388 * 240.00019 * 17 15 13 21 21 C 1.48531 * 105.82143 * 25.33289 * 11 10 9 22 22 N 1.29023 * 110.16773 * 359.71258 * 5 4 3 23 23 H 1.09006 * 109.47329 * 270.02659 * 1 2 3 24 24 H 1.09002 * 109.47394 * 30.02553 * 1 2 3 25 25 H 1.09005 * 109.47315 * 150.02406 * 1 2 3 26 26 H 1.08000 * 126.03870 * 359.97284 * 3 2 1 27 27 H 1.09002 * 109.46922 * 149.69686 * 6 5 4 28 28 H 1.08990 * 109.46991 * 29.69396 * 6 5 4 29 29 H 1.09004 * 110.31234 * 338.60094 * 9 7 6 30 30 H 1.09003 * 110.31128 * 100.77452 * 9 7 6 31 31 H 1.08993 * 109.91860 * 118.13167 * 10 9 7 32 32 H 1.09006 * 109.91748 * 239.23020 * 10 9 7 33 33 H 1.08995 * 109.46865 * 172.60370 * 12 11 10 34 34 H 1.08999 * 109.47057 * 292.60920 * 12 11 10 35 35 H 0.96993 * 120.00024 * 179.97438 * 16 15 13 36 36 H 1.09001 * 110.67185 * 202.35127 * 21 11 10 37 37 H 1.09004 * 110.66470 * 79.22703 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6731 0.0070 5 6 3.5039 -0.9819 0.0008 6 6 4.4835 -2.1272 0.0020 7 6 4.8153 -2.5159 -1.4401 8 1 5.1221 -1.6409 -2.0131 9 6 3.6108 -3.2175 -2.1085 10 6 4.2226 -4.3550 -2.9473 11 7 5.6901 -4.2745 -2.7824 12 6 6.2962 -5.6126 -2.8014 13 6 5.8448 -6.3509 -4.0352 14 1 5.1745 -5.8740 -4.7350 15 6 6.2868 -7.6356 -4.2702 16 7 7.1019 -8.2169 -3.4173 17 14 5.7268 -8.5510 -5.7991 18 1 4.8183 -7.6832 -6.5908 19 1 6.9096 -8.9098 -6.6223 20 1 5.0078 -9.7876 -5.4003 21 6 5.9147 -3.6070 -1.4747 22 7 2.2199 -1.1084 0.0004 23 1 -0.3634 0.0005 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.8391 2.1308 -0.0004 27 1 4.0431 -2.9813 0.5164 28 1 5.3957 -1.8244 0.5158 29 1 2.9415 -3.6244 -1.3505 30 1 3.0752 -2.5191 -2.7517 31 1 3.8606 -5.3179 -2.5872 32 1 3.9563 -4.2272 -3.9966 33 1 7.3821 -5.5195 -2.8106 34 1 5.9862 -6.1645 -1.9140 35 1 7.4125 -9.1208 -3.5824 36 1 6.9061 -3.1555 -1.4384 37 1 5.7821 -4.3129 -0.6547 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933126693.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:06:02 Heat of formation + Delta-G solvation = 14.893921 kcal Electronic energy + Delta-G solvation = -17593.851548 eV Core-core repulsion = 14882.432156 eV Total energy + Delta-G solvation = -2711.419392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.91622 -39.80362 -35.78281 -34.40387 -32.43833 -30.64937 -29.24521 -28.43829 -27.17045 -24.51281 -23.57225 -21.71858 -21.08462 -20.59036 -18.49859 -18.26605 -17.13591 -16.90365 -16.14618 -16.08161 -15.48972 -14.98052 -14.73075 -14.57906 -14.32372 -14.11079 -13.72615 -13.37279 -13.29269 -13.17423 -13.03302 -12.80395 -12.52631 -12.33317 -12.18784 -11.98507 -11.82994 -11.68106 -11.53292 -11.16296 -10.66094 -10.53966 -10.31089 -9.56874 -9.11488 -8.24078 -6.33929 -0.21479 0.47546 0.84919 1.38980 1.39521 1.53255 1.84543 2.38550 3.09082 3.10359 3.37996 3.65085 3.82020 4.01965 4.13309 4.31816 4.39077 4.41675 4.47049 4.56222 4.74985 4.76237 4.78778 4.86561 4.88911 4.98696 4.99719 5.07697 5.12057 5.21854 5.29621 5.40201 5.42240 5.62328 5.95509 6.24844 6.54307 6.82492 6.87068 7.36080 8.88181 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039019 B = 0.003675 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.425465 B = 7616.568481 C = 8051.291262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 C -0.265 4.265 4 S 0.141 5.859 5 C 0.048 3.952 6 C -0.033 4.033 7 C -0.068 4.068 8 H 0.088 0.912 9 C -0.108 4.108 10 C 0.053 3.947 11 N -0.529 5.529 12 C 0.199 3.801 13 C -0.531 4.531 14 H 0.061 0.939 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.969 3.031 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.277 1.277 21 C 0.038 3.962 22 N -0.499 5.499 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.202 0.798 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.006 0.994 34 H -0.034 1.034 35 H 0.265 0.735 36 H 0.086 0.914 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.090 20.235 8.876 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.404 4.404 4 S 0.396 5.604 5 C -0.230 4.230 6 C -0.074 4.074 7 C -0.088 4.088 8 H 0.106 0.894 9 C -0.146 4.146 10 C -0.075 4.075 11 N -0.253 5.253 12 C 0.072 3.928 13 C -0.569 4.569 14 H 0.080 0.920 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.203 1.203 21 C -0.090 4.090 22 N -0.214 5.214 23 H 0.101 0.899 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.219 0.781 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.024 0.976 34 H -0.017 1.017 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.022 20.393 8.490 23.861 hybrid contribution -1.185 -1.530 -0.063 1.936 sum -10.207 18.863 8.427 23.044 Atomic orbital electron populations 1.20422 0.85705 1.03881 1.03558 1.20775 0.99521 0.86582 1.01966 1.27154 0.94896 1.04796 1.13535 1.83858 1.07529 1.01618 1.67402 1.27053 0.93929 0.99227 1.02776 1.20317 0.96262 0.93850 0.96936 1.21942 0.94296 0.97781 0.94797 0.89360 1.22357 0.97235 0.96425 0.98573 1.22567 0.88351 0.96896 0.99667 1.64721 1.10150 1.20402 1.29992 1.19543 0.93976 0.84479 0.94767 1.21548 1.28672 0.99107 1.07600 0.92047 1.25926 0.95042 0.98425 1.00197 1.70085 1.34468 1.14712 1.38009 0.85332 0.78301 0.78178 0.78811 1.18884 1.20115 1.20263 1.23305 0.99624 0.95542 0.90576 1.66158 1.05292 1.32954 1.17032 0.89871 0.88681 0.91611 0.78076 0.89360 0.87107 0.91353 0.91485 0.96042 0.92300 0.97559 1.01680 0.92582 0.89559 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.31 71.23 0.73 -0.41 16 2 C 0.04 0.90 6.74 41.52 0.28 1.18 16 3 C -0.27 -4.48 11.13 66.78 0.74 -3.74 16 4 S 0.14 2.55 23.18 -56.49 -1.31 1.24 16 5 C 0.05 1.12 6.34 88.52 0.56 1.68 16 6 C -0.03 -0.76 5.21 29.85 0.16 -0.60 16 7 C -0.07 -1.92 3.03 -9.59 -0.03 -1.95 16 8 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 9 C -0.11 -3.49 6.21 31.47 0.20 -3.30 16 10 C 0.05 2.23 5.47 86.45 0.47 2.70 16 11 N -0.53 -23.91 5.39 -887.56 -4.78 -28.69 16 12 C 0.20 11.02 4.76 85.55 0.41 11.42 16 13 C -0.53 -31.08 8.42 25.60 0.22 -30.86 16 14 H 0.06 3.54 6.84 -2.91 -0.02 3.52 16 15 C 0.00 0.14 5.46 84.66 0.46 0.60 16 16 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 17 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 18 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 C 0.04 1.33 6.00 86.65 0.52 1.85 16 22 N -0.50 -12.92 10.53 -179.40 -1.89 -14.81 16 23 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 24 H 0.09 0.96 8.12 -2.39 -0.02 0.94 16 25 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 27 H 0.09 2.18 7.95 -2.39 -0.02 2.16 16 28 H 0.11 2.01 8.14 -2.39 -0.02 2.00 16 29 H 0.07 2.20 7.72 -2.38 -0.02 2.18 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.02 0.98 7.59 -2.39 -0.02 0.96 16 32 H 0.06 2.50 7.73 -2.38 -0.02 2.48 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H -0.03 -2.05 7.89 -2.39 -0.02 -2.07 16 35 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.03 1.27 7.76 -2.39 -0.02 1.25 16 Total: -1.00 -68.54 317.28 0.09 -68.45 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 1.04 Total: 4.82 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.72 Total: -21.43 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -6.39 Total: -100.28 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.31 Total: 1.24 kcal Total: -68.54 0.09 -68.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933126693.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.347 kcal (2) G-P(sol) polarization free energy of solvation -68.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds