Wall clock time and date at job start Mon Mar 30 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99571 * 2 1 4 4 C 1.53004 * 109.46737 * 269.99814 * 3 2 1 5 5 O 1.42903 * 109.47120 * 65.00272 * 4 3 2 6 6 C 1.42899 * 113.99611 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46728 * 180.02562 * 6 5 4 8 8 O 1.42896 * 109.47238 * 64.99723 * 7 6 5 9 9 C 1.38816 * 120.00110 * 179.97438 * 2 1 3 10 10 C 1.39803 * 119.57954 * 177.64412 * 9 2 1 11 11 C 1.38605 * 119.48789 * 179.78867 * 10 9 2 12 12 C 1.38396 * 118.67604 * 0.48137 * 11 10 9 13 13 C 1.40547 * 119.14977 * 359.74432 * 12 11 10 14 14 C 1.41316 * 119.78101 * 180.02562 * 13 12 11 15 15 H 1.08010 * 120.00478 * 5.78170 * 14 13 12 16 16 C 1.40026 * 120.00244 * 185.77631 * 14 13 12 17 17 N 1.30751 * 119.99822 * 354.38762 * 16 14 13 18 18 Si 1.86802 * 120.00493 * 174.38355 * 16 14 13 19 19 H 1.48507 * 109.46657 * 94.99491 * 18 16 14 20 20 H 1.48493 * 109.47382 * 214.99593 * 18 16 14 21 21 H 1.48500 * 109.46827 * 334.99821 * 18 16 14 22 22 N 1.31955 * 119.58735 * 357.91865 * 9 2 1 23 23 H 1.08994 * 109.46888 * 95.55991 * 1 2 3 24 24 H 1.09002 * 109.46743 * 215.55689 * 1 2 3 25 25 H 1.08994 * 109.47554 * 335.55497 * 1 2 3 26 26 H 1.08994 * 109.47292 * 150.00247 * 3 2 1 27 27 H 1.08999 * 109.47449 * 30.00008 * 3 2 1 28 28 H 1.09004 * 109.46703 * 184.99934 * 4 3 2 29 29 H 1.08997 * 109.47244 * 304.99792 * 4 3 2 30 30 H 1.09001 * 109.47310 * 299.99574 * 6 5 4 31 31 H 1.08998 * 109.47377 * 59.99987 * 6 5 4 32 32 H 1.08999 * 109.47037 * 184.99884 * 7 6 5 33 33 H 1.09004 * 109.46942 * 304.99530 * 7 6 5 34 34 H 0.96705 * 113.99607 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.25928 * 0.02562 * 10 9 2 36 36 H 1.07990 * 120.66141 * 180.22555 * 11 10 9 37 37 H 1.08001 * 120.41788 * 179.76941 * 12 11 10 38 38 H 0.96997 * 119.99808 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 8 1.2059 1.9935 -2.0815 6 6 1.3324 2.4173 -3.4403 7 6 -0.0567 2.6915 -4.0203 8 8 -0.6503 3.7951 -3.3336 9 6 2.1591 -1.2022 0.0005 10 6 3.5562 -1.1924 -0.0494 11 6 4.2475 -2.3938 -0.0444 12 6 3.5269 -3.5745 0.0003 13 6 2.1232 -3.5185 0.0443 14 6 1.3741 -4.7159 0.0907 15 1 1.8794 -5.6657 0.1865 16 6 -0.0232 -4.6711 0.0127 17 7 -0.6411 -3.5188 0.0075 18 14 -1.0047 -6.2576 -0.0843 19 1 -1.4472 -6.6498 1.2780 20 1 -2.1930 -6.0523 -0.9508 21 1 -0.1541 -7.3317 -0.6569 22 7 1.4918 -2.3398 0.0427 23 1 -0.3633 -0.0996 -1.0228 24 1 -0.3633 -0.8361 0.5976 25 1 -0.3634 0.9355 0.4252 26 1 3.1498 1.1386 0.5138 27 1 1.6083 2.0284 0.5138 28 1 3.0731 2.6065 -1.4439 29 1 2.9642 0.9132 -1.9815 30 1 1.9296 3.3282 -3.4827 31 1 1.8211 1.6350 -4.0210 32 1 0.0326 2.9287 -5.0804 33 1 -0.6827 1.8077 -3.8972 34 1 -1.5345 4.0258 -3.6502 35 1 4.0929 -0.2560 -0.0878 36 1 5.3268 -2.4083 -0.0788 37 1 4.0367 -4.5265 0.0016 38 1 -1.6090 -3.4878 -0.0469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261439314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:08 Heat of formation + Delta-G solvation = -47.291957 kcal Electronic energy + Delta-G solvation = -20386.277255 eV Core-core repulsion = 17229.408410 eV Total energy + Delta-G solvation = -3156.868845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.60731 -37.89051 -36.49565 -35.23485 -33.28914 -30.90063 -30.02146 -29.15002 -28.33138 -25.93370 -24.28105 -22.46328 -22.41634 -21.09471 -19.61891 -17.71876 -17.38892 -16.77356 -15.77990 -15.57378 -14.90870 -14.78095 -14.46448 -14.23661 -13.98531 -13.65973 -13.11252 -12.93779 -12.56375 -12.18850 -11.78701 -11.69156 -11.51836 -11.26021 -11.16113 -10.97100 -10.84288 -10.75311 -10.52732 -10.32737 -10.12052 -9.88234 -9.41899 -9.30626 -8.59936 -7.84327 -7.41070 -6.30300 -6.28457 -4.42381 2.90776 3.13834 3.17099 3.28631 3.33183 3.83208 4.01854 4.12907 4.19609 4.87687 5.04776 5.16306 5.28766 5.46061 5.55565 5.59229 5.60726 5.76701 5.91065 6.08164 6.10563 6.20013 6.33748 6.60511 6.77764 6.83207 6.94634 6.94801 7.22165 7.27456 7.41268 7.55827 7.65446 7.88065 8.01013 8.09734 8.44300 8.62721 8.86222 9.17300 10.29877 10.45554 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.005470 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.311697 B = 5117.947196 C = 6096.669385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.615 5.615 3 C 0.141 3.859 4 C 0.042 3.958 5 O -0.369 6.369 6 C 0.062 3.938 7 C 0.079 3.921 8 O -0.566 6.566 9 C 0.412 3.588 10 C -0.371 4.371 11 C -0.031 4.031 12 C -0.319 4.319 13 C 0.292 3.708 14 C -0.435 4.435 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.713 5.713 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.262 1.262 22 N -0.526 5.526 23 H 0.032 0.968 24 H 0.082 0.918 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.376 0.624 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 10.288 -5.426 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.332 5.332 3 C 0.015 3.985 4 C -0.036 4.036 5 O -0.288 6.288 6 C -0.015 4.015 7 C 0.001 3.999 8 O -0.371 6.371 9 C 0.174 3.826 10 C -0.397 4.397 11 C -0.056 4.056 12 C -0.342 4.342 13 C 0.165 3.835 14 C -0.467 4.467 15 H 0.100 0.900 16 C -0.152 4.152 17 N -0.335 5.335 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.247 5.247 23 H 0.051 0.949 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.222 0.778 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.868 10.445 -4.974 11.601 hybrid contribution 0.317 -0.626 -0.748 1.025 sum -0.551 9.819 -5.721 11.378 Atomic orbital electron populations 1.21232 0.79520 1.00318 1.00721 1.45876 1.04977 1.01530 1.80790 1.21241 0.97889 0.86008 0.93355 1.23185 0.86090 0.98406 0.95964 1.88002 1.29509 1.87359 1.23904 1.22449 0.95921 0.98291 0.84823 1.22191 0.94150 0.89478 0.94082 1.86560 1.35400 1.51428 1.63729 1.18529 0.87246 0.86998 0.89865 1.20622 0.93158 0.96879 1.29006 1.20573 0.96942 0.92750 0.95302 1.21523 0.95575 0.96320 1.20773 1.18221 0.88276 0.90536 0.86446 1.19559 0.90998 0.92855 1.43318 0.90023 1.26024 0.98539 0.97030 0.93655 1.70145 1.09033 1.25219 1.29091 0.86393 0.79427 0.82568 0.78842 1.19644 1.20253 1.18635 1.68250 1.36349 0.95312 1.24814 0.94948 0.89935 0.94504 0.89562 0.91062 0.93670 0.92858 0.93245 0.92245 0.92604 0.92549 0.77788 0.89215 0.89061 0.88854 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.66 10.04 59.85 0.60 3.26 16 2 N -0.62 -13.25 2.95 -181.69 -0.54 -13.78 16 3 C 0.14 2.39 5.52 -4.04 -0.02 2.37 16 4 C 0.04 0.66 6.28 37.16 0.23 0.90 16 5 O -0.37 -6.24 9.86 -40.09 -0.40 -6.64 16 6 C 0.06 0.83 6.32 37.16 0.23 1.07 16 7 C 0.08 0.91 7.43 37.16 0.28 1.19 16 8 O -0.57 -6.93 13.62 -40.09 -0.55 -7.48 16 9 C 0.41 10.35 7.38 -155.33 -1.15 9.20 16 10 C -0.37 -8.64 9.23 -38.86 -0.36 -9.00 16 11 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 12 C -0.32 -8.19 9.83 -38.65 -0.38 -8.57 16 13 C 0.29 8.24 6.54 -85.00 -0.56 7.68 16 14 C -0.44 -11.91 9.13 -37.74 -0.34 -12.25 16 15 H 0.08 2.11 7.85 -52.48 -0.41 1.69 16 16 C 0.07 1.87 5.49 -17.34 -0.10 1.77 16 17 N -0.71 -18.92 11.48 55.55 0.64 -18.29 16 18 Si 0.90 18.88 29.56 -169.99 -5.03 13.86 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 N -0.53 -14.71 6.69 -10.33 -0.07 -14.78 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.08 1.96 7.51 -51.93 -0.39 1.57 16 25 H 0.04 0.67 7.83 -51.93 -0.41 0.27 16 26 H 0.09 1.39 6.25 -51.93 -0.32 1.06 16 27 H 0.07 1.11 7.86 -51.93 -0.41 0.70 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.38 2.69 9.12 45.56 0.42 3.11 16 35 H 0.09 1.83 6.17 -52.49 -0.32 1.51 16 36 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.27 6.49 8.29 -40.82 -0.34 6.16 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -32.36 322.83 -7.82 -40.18 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.79 Total: 5.59 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.96 Total: -3.52 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.03 Total: -46.85 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.94 Total: -14.12 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.36 -7.82 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261439314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.114 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds