Wall clock time and date at job start Mon Mar 30 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99571 * 2 1 4 4 C 1.53004 * 109.46737 * 269.99814 * 3 2 1 5 5 O 1.42903 * 109.47120 * 65.00272 * 4 3 2 6 6 C 1.42899 * 113.99611 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46728 * 180.02562 * 6 5 4 8 8 O 1.42896 * 109.47238 * 64.99723 * 7 6 5 9 9 C 1.38816 * 120.00110 * 179.97438 * 2 1 3 10 10 C 1.39803 * 119.57954 * 177.64412 * 9 2 1 11 11 C 1.38605 * 119.48789 * 179.78867 * 10 9 2 12 12 C 1.38396 * 118.67604 * 0.48137 * 11 10 9 13 13 C 1.40547 * 119.14977 * 359.74432 * 12 11 10 14 14 C 1.41316 * 119.78101 * 180.02562 * 13 12 11 15 15 H 1.08010 * 120.00478 * 5.78170 * 14 13 12 16 16 C 1.40026 * 120.00244 * 185.77631 * 14 13 12 17 17 N 1.30751 * 119.99822 * 354.38762 * 16 14 13 18 18 Si 1.86802 * 120.00493 * 174.38355 * 16 14 13 19 19 H 1.48507 * 109.46657 * 94.99491 * 18 16 14 20 20 H 1.48493 * 109.47382 * 214.99593 * 18 16 14 21 21 H 1.48500 * 109.46827 * 334.99821 * 18 16 14 22 22 N 1.31955 * 119.58735 * 357.91865 * 9 2 1 23 23 H 1.08994 * 109.46888 * 95.55991 * 1 2 3 24 24 H 1.09002 * 109.46743 * 215.55689 * 1 2 3 25 25 H 1.08994 * 109.47554 * 335.55497 * 1 2 3 26 26 H 1.08994 * 109.47292 * 150.00247 * 3 2 1 27 27 H 1.08999 * 109.47449 * 30.00008 * 3 2 1 28 28 H 1.09004 * 109.46703 * 184.99934 * 4 3 2 29 29 H 1.08997 * 109.47244 * 304.99792 * 4 3 2 30 30 H 1.09001 * 109.47310 * 299.99574 * 6 5 4 31 31 H 1.08998 * 109.47377 * 59.99987 * 6 5 4 32 32 H 1.08999 * 109.47037 * 184.99884 * 7 6 5 33 33 H 1.09004 * 109.46942 * 304.99530 * 7 6 5 34 34 H 0.96705 * 113.99607 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.25928 * 0.02562 * 10 9 2 36 36 H 1.07990 * 120.66141 * 180.22555 * 11 10 9 37 37 H 1.08001 * 120.41788 * 179.76941 * 12 11 10 38 38 H 0.96997 * 119.99808 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 -1.4426 5 8 1.2059 1.9935 -2.0815 6 6 1.3324 2.4173 -3.4403 7 6 -0.0567 2.6915 -4.0203 8 8 -0.6503 3.7951 -3.3336 9 6 2.1591 -1.2022 0.0005 10 6 3.5562 -1.1924 -0.0494 11 6 4.2475 -2.3938 -0.0444 12 6 3.5269 -3.5745 0.0003 13 6 2.1232 -3.5185 0.0443 14 6 1.3741 -4.7159 0.0907 15 1 1.8794 -5.6657 0.1865 16 6 -0.0232 -4.6711 0.0127 17 7 -0.6411 -3.5188 0.0075 18 14 -1.0047 -6.2576 -0.0843 19 1 -1.4472 -6.6498 1.2780 20 1 -2.1930 -6.0523 -0.9508 21 1 -0.1541 -7.3317 -0.6569 22 7 1.4918 -2.3398 0.0427 23 1 -0.3633 -0.0996 -1.0228 24 1 -0.3633 -0.8361 0.5976 25 1 -0.3634 0.9355 0.4252 26 1 3.1498 1.1386 0.5138 27 1 1.6083 2.0284 0.5138 28 1 3.0731 2.6065 -1.4439 29 1 2.9642 0.9132 -1.9815 30 1 1.9296 3.3282 -3.4827 31 1 1.8211 1.6350 -4.0210 32 1 0.0326 2.9287 -5.0804 33 1 -0.6827 1.8077 -3.8972 34 1 -1.5345 4.0258 -3.6502 35 1 4.0929 -0.2560 -0.0878 36 1 5.3268 -2.4083 -0.0788 37 1 4.0367 -4.5265 0.0016 38 1 -1.6090 -3.4878 -0.0469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261439314.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:08 Heat of formation + Delta-G solvation = -69.571518 kcal Electronic energy + Delta-G solvation = -20387.243370 eV Core-core repulsion = 17229.408410 eV Total energy + Delta-G solvation = -3157.834960 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.31848 -39.18246 -37.63852 -36.75179 -35.18907 -32.56148 -31.62551 -30.82638 -29.66724 -27.77695 -26.04339 -23.95518 -23.40579 -22.99646 -21.35568 -19.30462 -18.60371 -18.12023 -17.34421 -16.94003 -16.47802 -16.32558 -16.15663 -15.68181 -15.24331 -15.08687 -14.79628 -14.54104 -13.98366 -13.80097 -13.55543 -13.05405 -12.93937 -12.85867 -12.69305 -12.58688 -12.47637 -12.39766 -12.10217 -11.84681 -11.71131 -11.22190 -10.99917 -10.56593 -10.41575 -9.78116 -9.35712 -8.19720 -8.11146 -6.44026 1.08417 1.37938 1.42049 1.54436 1.59800 2.26476 2.45456 2.78647 2.95368 3.38232 4.02582 4.11549 4.15079 4.21249 4.28050 4.31412 4.45862 4.49910 4.56626 4.61994 4.68966 4.79215 4.83073 4.89465 5.01325 5.02921 5.05542 5.14926 5.35951 5.38706 5.76501 5.99691 6.13915 6.19106 6.29892 6.62866 6.72566 6.89410 6.93741 7.23750 8.38113 8.54444 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.005470 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.311697 B = 5117.947196 C = 6096.669385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.616 5.616 3 C 0.134 3.866 4 C 0.048 3.952 5 O -0.396 6.396 6 C 0.053 3.947 7 C 0.080 3.920 8 O -0.588 6.588 9 C 0.392 3.608 10 C -0.366 4.366 11 C -0.029 4.029 12 C -0.347 4.347 13 C 0.258 3.742 14 C -0.473 4.473 15 H 0.084 0.916 16 C 0.028 3.972 17 N -0.746 5.746 18 Si 0.983 3.017 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.258 1.258 22 N -0.557 5.557 23 H 0.015 0.985 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.396 0.604 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 11.468 -5.917 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.332 5.332 3 C 0.011 3.989 4 C -0.030 4.030 5 O -0.316 6.316 6 C -0.024 4.024 7 C 0.002 3.998 8 O -0.396 6.396 9 C 0.152 3.848 10 C -0.392 4.392 11 C -0.053 4.053 12 C -0.370 4.370 13 C 0.131 3.869 14 C -0.505 4.505 15 H 0.102 0.898 16 C -0.194 4.194 17 N -0.368 5.368 18 Si 0.804 3.196 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.182 1.182 22 N -0.280 5.280 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.245 0.755 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.435 11.677 -5.473 12.904 hybrid contribution 0.237 -0.823 -0.613 1.053 sum -0.198 10.854 -6.086 12.445 Atomic orbital electron populations 1.21017 0.79846 1.00444 0.99181 1.46115 1.05101 1.02023 1.79989 1.21552 0.98297 0.84243 0.94822 1.23090 0.86171 0.99209 0.94575 1.87963 1.30241 1.87674 1.25714 1.22702 0.97453 0.98883 0.83333 1.22225 0.92940 0.88946 0.95656 1.86493 1.37099 1.51415 1.64577 1.19006 0.88525 0.87482 0.89769 1.20987 0.92651 0.98316 1.27210 1.20994 0.98860 0.91915 0.93557 1.21683 0.95084 0.97730 1.22461 1.18693 0.89733 0.91181 0.87294 1.19895 0.92386 0.92993 1.45203 0.89822 1.26904 0.99005 1.00783 0.92726 1.70252 1.09564 1.27470 1.29468 0.85190 0.77612 0.77720 0.79083 1.18869 1.19414 1.18202 1.68209 1.37582 0.96146 1.26022 0.96684 0.93040 0.91575 0.88308 0.89254 0.90270 0.94733 0.91865 0.91968 0.89275 0.94000 0.75467 0.85931 0.85278 0.88222 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 5.95 10.04 127.77 1.28 7.23 16 2 N -0.62 -26.24 2.95 -728.74 -2.15 -28.38 16 3 C 0.13 4.27 5.52 86.38 0.48 4.75 16 4 C 0.05 1.40 6.28 71.98 0.45 1.85 16 5 O -0.40 -12.83 9.86 -144.34 -1.42 -14.25 16 6 C 0.05 1.33 6.32 71.98 0.45 1.78 16 7 C 0.08 1.72 7.43 71.98 0.53 2.26 16 8 O -0.59 -13.33 13.62 -144.34 -1.97 -15.29 16 9 C 0.39 19.71 7.38 133.42 0.99 20.70 16 10 C -0.37 -16.55 9.23 22.74 0.21 -16.34 16 11 C -0.03 -1.33 10.15 22.40 0.23 -1.10 16 12 C -0.35 -18.04 9.83 22.87 0.22 -17.82 16 13 C 0.26 15.03 6.54 40.18 0.26 15.29 16 14 C -0.47 -26.78 9.13 23.46 0.21 -26.57 16 15 H 0.08 4.48 7.85 -2.91 -0.02 4.45 16 16 C 0.03 1.47 5.49 85.29 0.47 1.93 16 17 N -0.75 -40.88 11.48 21.84 0.25 -40.63 16 18 Si 0.98 39.43 29.56 68.60 2.03 41.46 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 22 N -0.56 -32.09 6.69 -186.60 -1.25 -33.34 16 23 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.05 2.53 7.51 -2.39 -0.02 2.51 16 25 H 0.07 2.38 7.83 -2.39 -0.02 2.36 16 26 H 0.10 2.87 6.25 -2.39 -0.01 2.86 16 27 H 0.09 2.53 7.86 -2.39 -0.02 2.51 16 28 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.40 4.98 9.12 -74.05 -0.68 4.31 16 35 H 0.12 4.63 6.17 -2.91 -0.02 4.61 16 36 H 0.13 4.80 8.06 -2.92 -0.02 4.78 16 37 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 38 H 0.27 13.67 8.29 -92.71 -0.77 12.90 16 Total: -1.00 -71.81 322.83 1.67 -70.14 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.38 Total: 26.33 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: 5.79 Total: -6.04 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -3.15 Total: -102.35 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -3.39 Total: -29.54 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -71.81 1.67 -70.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261439314.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.573 kcal (2) G-P(sol) polarization free energy of solvation -71.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds