Wall clock time and date at job start Mon Mar 30 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36929 * 120.00108 * 2 1 4 4 H 1.08005 * 120.00011 * 202.34144 * 3 2 1 5 5 C 1.38809 * 120.00369 * 22.34451 * 3 2 1 6 6 N 1.31619 * 119.99575 * 11.34864 * 5 3 2 7 7 Si 1.86797 * 120.00340 * 191.35387 * 5 3 2 8 8 H 1.48503 * 109.47127 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47153 * 119.99554 * 7 5 3 10 10 H 1.48497 * 109.47356 * 239.99812 * 7 5 3 11 11 C 1.46500 * 119.99813 * 179.97438 * 2 1 3 12 12 C 1.53008 * 109.47348 * 270.00273 * 11 2 1 13 13 N 1.46500 * 109.46958 * 179.97438 * 12 11 2 14 14 C 1.34777 * 119.99350 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00603 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99775 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47443 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47443 * 180.02562 * 17 16 14 19 19 C 1.34511 * 125.78610 * 90.00305 * 18 17 16 20 20 C 1.41389 * 106.83998 * 180.02562 * 19 18 17 21 21 C 1.34519 * 106.84065 * 0.02562 * 20 19 18 22 22 O 1.34299 * 125.78992 * 270.02756 * 18 17 16 23 23 H 1.08994 * 109.47450 * 274.20778 * 1 2 3 24 24 H 1.08997 * 109.46639 * 34.21320 * 1 2 3 25 25 H 1.09002 * 109.47110 * 154.20844 * 1 2 3 26 26 H 0.97002 * 119.99947 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47473 * 150.00336 * 11 2 1 28 28 H 1.09003 * 109.47593 * 30.00180 * 11 2 1 29 29 H 1.09005 * 109.46728 * 59.99999 * 12 11 2 30 30 H 1.09001 * 109.46901 * 299.99947 * 12 11 2 31 31 H 0.96993 * 120.00587 * 0.02562 * 13 12 11 32 32 H 1.09005 * 109.47110 * 60.00395 * 16 14 13 33 33 H 1.09003 * 109.47653 * 300.00032 * 16 14 13 34 34 H 1.09009 * 109.46857 * 60.00064 * 17 16 14 35 35 H 1.08993 * 109.47399 * 300.00419 * 17 16 14 36 36 H 1.07991 * 126.58522 * 359.97438 * 19 18 17 37 37 H 1.07998 * 126.58451 * 179.97438 * 20 19 18 38 38 H 1.07993 * 125.78926 * 180.26141 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5339 2.3429 0.4570 6 7 0.3843 2.2690 1.0936 7 14 2.3367 4.0047 0.1685 8 1 3.6144 3.8166 -0.5646 9 1 1.4268 4.8614 -0.6337 10 1 2.6074 4.6571 1.4746 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 7 3.1844 -2.9790 1.4438 14 6 3.5216 -3.5618 2.6113 15 8 3.2196 -3.0356 3.6614 16 6 4.2740 -4.8675 2.6119 17 6 4.5302 -5.3080 4.0545 18 6 5.2831 -6.6134 4.0551 19 6 6.6213 -6.7495 4.0541 20 6 6.8918 -8.1373 4.0546 21 6 5.7027 -8.7662 4.0553 22 8 4.7319 -7.8380 4.0563 23 1 -0.3634 0.0754 1.0248 24 1 -0.3632 0.8498 -0.5778 25 1 -0.3633 -0.9253 -0.4471 26 1 -0.0463 3.0776 1.4126 27 1 3.1499 -1.1387 -0.5132 28 1 1.6084 -2.0287 -0.5129 29 1 1.4999 -1.8400 1.9571 30 1 3.0416 -0.9500 1.9568 31 1 3.4269 -3.3993 0.6040 32 1 5.2262 -4.7384 2.0973 33 1 3.6840 -5.6272 2.0991 34 1 3.5781 -5.4370 4.5695 35 1 5.1203 -4.5483 4.5670 36 1 7.3494 -5.9520 4.0523 37 1 7.8661 -8.6032 4.0536 38 1 5.5539 -9.8358 4.0598 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663142005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:13 Heat of formation + Delta-G solvation = -7.389577 kcal Electronic energy + Delta-G solvation = -19207.565291 eV Core-core repulsion = 16052.426743 eV Total energy + Delta-G solvation = -3155.138548 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.75020 -39.43241 -36.10367 -34.27545 -34.01869 -32.96721 -31.33767 -29.36571 -27.84984 -25.88536 -24.74413 -22.84694 -21.94597 -20.66008 -20.57701 -19.93840 -17.68065 -16.88255 -16.63701 -16.14093 -15.72042 -15.43766 -14.76102 -14.61435 -14.18340 -13.63026 -13.27543 -13.22896 -13.02459 -12.86074 -12.45501 -12.34596 -12.27762 -12.09064 -11.24396 -11.18996 -10.88381 -10.85390 -10.60280 -10.27934 -10.13258 -9.98287 -9.91895 -9.63388 -8.65183 -8.64532 -8.56294 -6.83062 -5.75214 -3.22552 1.51904 2.40436 2.78192 2.87664 3.36953 3.43778 3.46251 3.52569 4.45594 4.51728 4.75115 4.79534 4.84969 4.97484 5.12069 5.39716 5.40994 5.52909 5.61329 5.63682 5.77989 5.81094 5.87619 5.97635 5.98318 6.27214 6.30495 6.68606 6.72210 6.73616 6.94896 6.97848 7.36149 7.71302 7.79571 7.80652 8.36027 8.50360 9.20199 9.82265 10.30357 11.29899 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042189 B = 0.002863 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.520273 B = 9777.886940 C =10013.526977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.259 4.259 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.725 5.725 14 C 0.506 3.494 15 O -0.544 6.544 16 C -0.137 4.137 17 C -0.026 4.026 18 C -0.005 4.005 19 C -0.213 4.213 20 C -0.214 4.214 21 C -0.048 4.048 22 O -0.176 6.176 23 H 0.030 0.970 24 H 0.047 0.953 25 H -0.002 1.002 26 H 0.253 0.747 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.396 0.604 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.034 -20.350 1.966 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.376 5.376 14 C 0.291 3.709 15 O -0.421 6.421 16 C -0.178 4.178 17 C -0.063 4.063 18 C -0.055 4.055 19 C -0.232 4.232 20 C -0.233 4.233 21 C -0.115 4.115 22 O -0.072 6.072 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.016 0.984 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.354 -19.827 2.758 22.096 hybrid contribution 0.798 0.625 -0.371 1.080 sum 10.152 -19.202 2.387 21.851 Atomic orbital electron populations 1.20851 0.82148 0.95754 0.99498 1.43941 1.02089 1.00381 1.85561 1.19260 0.98133 0.85207 1.36278 0.91172 1.25078 0.97665 0.98729 0.98139 1.70080 1.17781 1.27140 1.40036 0.86146 0.78634 0.84056 0.77466 1.20282 1.21559 1.21633 1.20996 0.96338 0.88915 0.92204 1.22529 0.95756 0.82842 1.02091 1.46205 1.58198 1.25296 1.07886 1.20505 0.79823 0.86272 0.84258 1.90725 1.54866 1.65233 1.31307 1.21670 1.01952 0.95954 0.98175 1.19870 1.01262 0.88410 0.96781 1.22554 0.92646 0.85237 1.05035 1.21643 0.95167 0.97128 1.09298 1.21846 0.99071 0.93974 1.08402 1.24019 0.86055 0.94479 1.06965 1.84037 1.37027 1.14953 1.71183 0.95211 0.93409 0.98378 0.93663 0.93338 0.93999 0.92211 0.91320 0.77139 0.88579 0.88719 0.89165 0.87910 0.83411 0.83568 0.78250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.01 59.85 0.54 4.54 16 2 N -0.60 -14.92 2.93 -181.12 -0.53 -15.45 16 3 C -0.26 -7.09 9.67 -15.06 -0.15 -7.24 16 4 H 0.07 1.87 7.84 -52.48 -0.41 1.46 16 5 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 6 N -0.91 -26.59 10.59 55.49 0.59 -26.00 16 7 Si 0.91 21.91 29.57 -169.99 -5.03 16.88 16 8 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.14 2.82 5.82 -4.04 -0.02 2.80 16 12 C 0.09 1.81 6.00 -4.04 -0.02 1.78 16 13 N -0.72 -10.56 5.56 -60.29 -0.33 -10.89 16 14 C 0.51 7.54 7.83 -10.99 -0.09 7.46 16 15 O -0.54 -10.61 15.98 5.56 0.09 -10.52 16 16 C -0.14 -1.41 5.68 -27.88 -0.16 -1.57 16 17 C -0.03 -0.28 5.04 -27.88 -0.14 -0.42 16 18 C 0.00 -0.05 6.57 -35.63 -0.23 -0.28 16 19 C -0.21 -2.09 10.81 -39.70 -0.43 -2.52 16 20 C -0.21 -1.85 10.91 -39.70 -0.43 -2.29 16 21 C -0.05 -0.40 12.09 29.42 0.36 -0.04 16 22 O -0.18 -1.92 10.65 5.70 0.06 -1.85 16 23 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 24 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 25 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 26 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 27 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 28 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.40 4.33 8.47 -40.82 -0.35 3.98 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.05 8.10 -51.92 -0.42 0.63 16 35 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 327.06 15.07 4.93 4.93 Total: -1.00 -33.45 327.06 -6.78 -40.22 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.68 Total: 0.50 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -0.87 Total: 2.19 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.28 Total: -52.34 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.15 Total: -12.38 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.45 -6.78 -40.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663142005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.835 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds