Wall clock time and date at job start Mon Mar 30 2020 00:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36929 * 120.00108 * 2 1 4 4 H 1.08005 * 120.00011 * 202.34144 * 3 2 1 5 5 C 1.38809 * 120.00369 * 22.34451 * 3 2 1 6 6 N 1.31619 * 119.99575 * 11.34864 * 5 3 2 7 7 Si 1.86797 * 120.00340 * 191.35387 * 5 3 2 8 8 H 1.48503 * 109.47127 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47153 * 119.99554 * 7 5 3 10 10 H 1.48497 * 109.47356 * 239.99812 * 7 5 3 11 11 C 1.46500 * 119.99813 * 179.97438 * 2 1 3 12 12 C 1.53008 * 109.47348 * 270.00273 * 11 2 1 13 13 N 1.46500 * 109.46958 * 179.97438 * 12 11 2 14 14 C 1.34777 * 119.99350 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00603 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99775 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47443 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47443 * 180.02562 * 17 16 14 19 19 C 1.34511 * 125.78610 * 90.00305 * 18 17 16 20 20 C 1.41389 * 106.83998 * 180.02562 * 19 18 17 21 21 C 1.34519 * 106.84065 * 0.02562 * 20 19 18 22 22 O 1.34299 * 125.78992 * 270.02756 * 18 17 16 23 23 H 1.08994 * 109.47450 * 274.20778 * 1 2 3 24 24 H 1.08997 * 109.46639 * 34.21320 * 1 2 3 25 25 H 1.09002 * 109.47110 * 154.20844 * 1 2 3 26 26 H 0.97002 * 119.99947 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47473 * 150.00336 * 11 2 1 28 28 H 1.09003 * 109.47593 * 30.00180 * 11 2 1 29 29 H 1.09005 * 109.46728 * 59.99999 * 12 11 2 30 30 H 1.09001 * 109.46901 * 299.99947 * 12 11 2 31 31 H 0.96993 * 120.00587 * 0.02562 * 13 12 11 32 32 H 1.09005 * 109.47110 * 60.00395 * 16 14 13 33 33 H 1.09003 * 109.47653 * 300.00032 * 16 14 13 34 34 H 1.09009 * 109.46857 * 60.00064 * 17 16 14 35 35 H 1.08993 * 109.47399 * 300.00419 * 17 16 14 36 36 H 1.07991 * 126.58522 * 359.97438 * 19 18 17 37 37 H 1.07998 * 126.58451 * 179.97438 * 20 19 18 38 38 H 1.07993 * 125.78926 * 180.26141 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2209 -0.3555 5 6 1.5339 2.3429 0.4570 6 7 0.3843 2.2690 1.0936 7 14 2.3367 4.0047 0.1685 8 1 3.6144 3.8166 -0.5646 9 1 1.4268 4.8614 -0.6337 10 1 2.6074 4.6571 1.4746 11 6 2.1975 -1.2688 0.0006 12 6 2.4524 -1.7099 1.4433 13 7 3.1844 -2.9790 1.4438 14 6 3.5216 -3.5618 2.6113 15 8 3.2196 -3.0356 3.6614 16 6 4.2740 -4.8675 2.6119 17 6 4.5302 -5.3080 4.0545 18 6 5.2831 -6.6134 4.0551 19 6 6.6213 -6.7495 4.0541 20 6 6.8918 -8.1373 4.0546 21 6 5.7027 -8.7662 4.0553 22 8 4.7319 -7.8380 4.0563 23 1 -0.3634 0.0754 1.0248 24 1 -0.3632 0.8498 -0.5778 25 1 -0.3633 -0.9253 -0.4471 26 1 -0.0463 3.0776 1.4126 27 1 3.1499 -1.1387 -0.5132 28 1 1.6084 -2.0287 -0.5129 29 1 1.4999 -1.8400 1.9571 30 1 3.0416 -0.9500 1.9568 31 1 3.4269 -3.3993 0.6040 32 1 5.2262 -4.7384 2.0973 33 1 3.6840 -5.6272 2.0991 34 1 3.5781 -5.4370 4.5695 35 1 5.1203 -4.5483 4.5670 36 1 7.3494 -5.9520 4.0523 37 1 7.8661 -8.6032 4.0536 38 1 5.5539 -9.8358 4.0598 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663142005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:13 Heat of formation + Delta-G solvation = -29.977414 kcal Electronic energy + Delta-G solvation = -19208.544773 eV Core-core repulsion = 16052.426743 eV Total energy + Delta-G solvation = -3156.118030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.45230 -40.72075 -37.88251 -35.73557 -35.03913 -33.68883 -33.25896 -30.52119 -29.15961 -27.93096 -25.91398 -24.39265 -22.62852 -22.37700 -21.48610 -21.06646 -18.83352 -18.47766 -17.73006 -17.12653 -16.86632 -16.74490 -16.60569 -15.78567 -15.41504 -15.25720 -14.76417 -14.64497 -14.11214 -13.94796 -13.69597 -13.49064 -13.27628 -13.10693 -12.99340 -12.81506 -12.63005 -12.48793 -12.06639 -12.04322 -12.01655 -11.75117 -10.98748 -10.80492 -10.68125 -10.05008 -9.35294 -8.86901 -7.85577 -5.35204 0.81606 1.46107 1.47067 1.57622 1.66846 1.73152 2.04618 2.33444 2.53211 3.30188 3.61196 3.83087 3.90050 4.05926 4.18226 4.19359 4.24974 4.34330 4.39158 4.59997 4.67577 4.77236 4.84322 4.97434 5.00679 5.07489 5.10676 5.17935 5.27977 5.32092 5.50185 5.62997 5.65632 5.71882 6.25623 6.30681 6.63048 7.12121 7.32906 7.83091 8.25441 9.18427 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.042189 B = 0.002863 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.520273 B = 9777.886940 C =10013.526977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.616 5.616 3 C -0.264 4.264 4 H 0.077 0.923 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.971 3.029 8 H -0.262 1.262 9 H -0.289 1.289 10 H -0.296 1.296 11 C 0.146 3.854 12 C 0.114 3.886 13 N -0.711 5.711 14 C 0.504 3.496 15 O -0.595 6.595 16 C -0.120 4.120 17 C -0.022 4.022 18 C -0.025 4.025 19 C -0.217 4.217 20 C -0.227 4.227 21 C -0.045 4.045 22 O -0.194 6.194 23 H -0.002 1.002 24 H 0.022 0.978 25 H 0.036 0.964 26 H 0.248 0.752 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.418 0.582 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.913 -22.487 0.566 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.339 5.339 3 C -0.394 4.394 4 H 0.095 0.905 5 C -0.252 4.252 6 N -0.587 5.587 7 Si 0.799 3.201 8 H -0.186 1.186 9 H -0.216 1.216 10 H -0.223 1.223 11 C 0.019 3.981 12 C -0.013 4.013 13 N -0.363 5.363 14 C 0.292 3.708 15 O -0.476 6.476 16 C -0.160 4.160 17 C -0.060 4.060 18 C -0.074 4.074 19 C -0.236 4.236 20 C -0.246 4.246 21 C -0.111 4.111 22 O -0.091 6.091 23 H 0.016 0.984 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.255 0.745 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.176 0.824 37 H 0.185 0.815 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 11.277 -22.021 1.310 24.775 hybrid contribution 0.266 1.141 0.079 1.175 sum 11.543 -20.879 1.389 23.898 Atomic orbital electron populations 1.20603 0.82487 0.96496 0.97474 1.44203 1.02386 1.01709 1.85636 1.19634 0.98342 0.86359 1.35054 0.90509 1.25886 0.98469 1.02237 0.98630 1.70258 1.19333 1.27488 1.41649 0.85140 0.78253 0.79775 0.76905 1.18615 1.21598 1.22349 1.21149 0.97159 0.87509 0.92261 1.21907 0.94213 0.84059 1.01134 1.45919 1.57470 1.23663 1.09273 1.21353 0.78993 0.87285 0.83186 1.90711 1.56831 1.66877 1.33204 1.21623 1.02704 0.93195 0.98446 1.19739 1.00460 0.88842 0.96938 1.22435 0.92902 0.85120 1.06983 1.21931 0.95048 0.98249 1.08400 1.22186 1.00296 0.93526 1.08554 1.24795 0.85547 0.95618 1.05189 1.84024 1.38126 1.15353 1.71615 0.98367 0.95953 0.94543 0.94299 0.91603 0.90703 0.95019 0.95233 0.74461 0.85805 0.86436 0.90766 0.88601 0.82436 0.81471 0.74825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.65 9.01 127.77 1.15 9.80 16 2 N -0.62 -30.57 2.93 -726.93 -2.13 -32.70 16 3 C -0.26 -14.40 9.67 84.03 0.81 -13.58 16 4 H 0.08 4.01 7.84 -2.91 -0.02 3.98 16 5 C -0.06 -3.25 5.13 84.86 0.44 -2.82 16 6 N -0.94 -56.83 10.59 21.65 0.23 -56.60 16 7 Si 0.97 45.47 29.57 68.60 2.03 47.50 16 8 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 9 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 11 C 0.15 5.45 5.82 86.38 0.50 5.96 16 12 C 0.11 4.40 6.00 86.38 0.52 4.92 16 13 N -0.71 -19.53 5.56 -463.04 -2.57 -22.10 16 14 C 0.50 14.57 7.83 87.66 0.69 15.26 16 15 O -0.60 -23.77 15.98 -3.03 -0.05 -23.82 16 16 C -0.12 -2.20 5.68 29.85 0.17 -2.03 16 17 C -0.02 -0.46 5.04 29.85 0.15 -0.31 16 18 C -0.02 -0.49 6.57 24.83 0.16 -0.33 16 19 C -0.22 -3.85 10.81 22.19 0.24 -3.61 16 20 C -0.23 -3.35 10.91 22.19 0.24 -3.11 16 21 C -0.04 -0.63 12.09 66.97 0.81 0.18 16 22 O -0.19 -3.90 10.65 -2.51 -0.03 -3.93 16 23 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 24 H 0.02 1.18 7.19 -2.39 -0.02 1.16 16 25 H 0.04 1.49 7.84 -2.39 -0.02 1.47 16 26 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.07 2.25 8.03 -2.39 -0.02 2.23 16 28 H 0.07 2.33 7.86 -2.39 -0.02 2.31 16 29 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.42 7.76 8.47 -92.71 -0.79 6.98 16 32 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.76 8.10 -2.38 -0.02 1.74 16 35 H 0.10 2.09 8.10 -2.39 -0.02 2.07 16 36 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.24 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -74.97 327.06 3.63 -71.34 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.26 Total: 9.98 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 5.88 Total: 10.33 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -4.47 Total: -111.40 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.08 Total: -27.75 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.97 3.63 -71.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663142005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.363 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds