Wall clock time and date at job start Mon Mar 30 2020 00:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31130 * 126.55441 * 2 1 4 4 C 1.34491 * 105.61370 * 179.97438 * 3 2 1 5 5 C 1.50708 * 126.28244 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47301 * 90.00118 * 5 4 3 7 7 C 1.46963 * 110.99746 * 293.79936 * 6 5 4 8 8 C 1.53055 * 109.36395 * 176.81271 * 7 6 5 9 9 N 1.46956 * 109.36416 * 58.39725 * 8 7 6 10 10 C 1.46899 * 110.99902 * 176.81045 * 9 8 7 11 11 C 1.50702 * 109.47196 * 293.80014 * 10 9 8 12 12 H 1.07995 * 119.99811 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99785 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00189 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99770 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47136 * 59.99670 * 15 13 11 17 17 H 1.48499 * 109.47085 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47005 * 299.99465 * 15 13 11 19 19 C 1.46950 * 110.88187 * 300.68087 * 9 8 7 20 20 C 1.46956 * 111.00196 * 170.00056 * 6 5 4 21 21 N 1.29941 * 107.42679 * 0.24152 * 4 3 2 22 22 O 1.21304 * 110.24851 * 359.58176 * 21 4 3 23 23 H 1.08999 * 109.47182 * 90.00023 * 1 2 3 24 24 H 1.08996 * 109.47263 * 209.99851 * 1 2 3 25 25 H 1.08999 * 109.46635 * 329.99946 * 1 2 3 26 26 H 1.09002 * 109.46926 * 329.99719 * 5 4 3 27 27 H 1.09004 * 109.46862 * 210.00177 * 5 4 3 28 28 H 1.09003 * 109.48613 * 296.77787 * 7 6 5 29 29 H 1.08994 * 109.49091 * 56.84241 * 7 6 5 30 30 H 1.08994 * 109.48838 * 298.43235 * 8 7 6 31 31 H 1.09004 * 109.48400 * 178.36395 * 8 7 6 32 32 H 1.09001 * 109.46732 * 53.80062 * 10 9 8 33 33 H 1.09005 * 109.46849 * 173.80089 * 10 9 8 34 34 H 0.96998 * 120.00250 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.48721 * 299.35316 * 19 9 8 36 36 H 1.09004 * 109.49418 * 179.28931 * 19 9 8 37 37 H 1.09000 * 109.48237 * 303.15282 * 20 6 5 38 38 H 1.08994 * 109.48936 * 63.21821 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5727 0.0006 5 6 4.8112 1.3886 0.0003 6 7 5.2227 1.6546 1.3851 7 6 4.2517 2.5230 2.0654 8 6 4.6739 2.7108 3.5245 9 7 6.0215 3.2952 3.5705 10 6 6.4329 3.5613 4.9553 11 6 5.5580 4.6395 5.5410 12 1 4.7744 5.0825 4.9442 13 6 5.7579 5.0605 6.8386 14 7 6.7119 4.5207 7.5654 15 14 4.6730 6.3965 7.5647 16 1 3.2573 5.9487 7.5469 17 1 5.0890 6.6656 8.9646 18 1 4.8099 7.6371 6.7600 19 6 6.9924 2.4268 2.8902 20 6 6.5703 2.2390 1.4311 21 7 3.4645 -0.7243 -0.0043 22 8 2.3028 -1.0736 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8900 0.5138 26 1 4.6350 2.3332 -0.5143 27 1 5.5986 0.8366 -0.5131 28 1 4.2201 3.4925 1.5682 29 1 3.2643 2.0630 2.0288 30 1 4.6791 1.7446 4.0288 31 1 3.9709 3.3781 4.0234 32 1 6.3317 2.6506 5.5457 33 1 7.4723 3.8894 4.9689 34 1 6.8523 4.8166 8.4784 35 1 7.0239 1.4573 3.3874 36 1 7.9799 2.8868 2.9267 37 1 7.2731 1.5718 0.9322 38 1 6.5650 3.2052 0.9268 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114466029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:14:26 Heat of formation + Delta-G solvation = 84.340281 kcal Electronic energy + Delta-G solvation = -20238.433642 eV Core-core repulsion = 17119.565550 eV Total energy + Delta-G solvation = -3118.868092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.66504 -38.86573 -36.29556 -34.99170 -33.54670 -32.39504 -30.45180 -29.40272 -28.74418 -26.59060 -24.39860 -23.37393 -23.16443 -21.56383 -21.05606 -19.18490 -18.27288 -17.51098 -16.31105 -15.87848 -15.37618 -14.80496 -14.61791 -14.47739 -14.17974 -13.77201 -13.70761 -13.43576 -13.34104 -12.73038 -12.46126 -12.08923 -12.00379 -11.80187 -11.54545 -11.18264 -11.09567 -10.87007 -10.74443 -10.65033 -10.40162 -10.33464 -9.97899 -9.70343 -9.18358 -8.42795 -8.26311 -7.22859 -6.01276 -4.02860 1.06594 2.10225 2.71649 3.34363 3.38192 3.41227 3.48081 3.93542 4.14819 4.43381 4.78982 4.93457 4.94995 4.96116 5.13166 5.24820 5.34107 5.38282 5.47617 5.54489 5.68213 5.75055 5.80460 5.89730 5.91871 6.07681 6.18734 6.42124 6.57996 6.69213 7.07466 7.12072 7.34080 7.37851 7.80812 8.09650 8.11371 8.21288 8.56160 9.04335 9.61264 11.09629 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.025213 B = 0.004212 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.290144 B = 6646.571174 C = 7414.442772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.172 3.828 3 N -0.479 5.479 4 C 0.186 3.814 5 C 0.144 3.856 6 N -0.536 5.536 7 C 0.059 3.941 8 C 0.069 3.931 9 N -0.538 5.538 10 C 0.194 3.806 11 C -0.508 4.508 12 H 0.062 0.938 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.057 3.943 20 C 0.064 3.936 21 N -0.371 5.371 22 O 0.074 5.926 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.104 0.896 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.087 0.913 32 H -0.009 1.009 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.713 -9.029 -16.730 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.049 4.049 3 N -0.214 5.214 4 C -0.088 4.088 5 C 0.014 3.986 6 N -0.263 5.263 7 C -0.069 4.069 8 C -0.060 4.060 9 N -0.263 5.263 10 C 0.069 3.931 11 C -0.547 4.547 12 H 0.080 0.920 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.072 4.072 20 C -0.064 4.064 21 N -0.079 5.079 22 O 0.015 5.985 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.009 0.991 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.806 -9.097 -16.545 20.833 hybrid contribution -0.648 0.615 0.574 1.062 sum -9.454 -8.483 -15.971 20.406 Atomic orbital electron populations 1.20372 0.80345 1.05959 1.05195 1.28816 0.98904 0.80888 0.96286 1.71919 1.00401 1.28938 1.20107 1.25641 0.94901 0.88170 1.00061 1.20248 0.89258 0.97020 0.92045 1.62137 1.03607 1.47982 1.12537 1.22302 0.94496 0.94475 0.95602 1.21981 0.92886 0.97810 0.93299 1.62296 1.00664 1.42807 1.20554 1.19702 0.96788 0.95547 0.81094 1.21118 1.16634 1.19902 0.97026 0.91975 1.24986 0.95613 0.96923 0.97036 1.69951 1.31706 1.42808 1.09382 0.86560 0.80688 0.82202 0.77959 1.20285 1.21345 1.20160 1.22063 0.96727 0.95837 0.92622 1.22181 0.88453 0.97555 0.98222 1.74635 0.97002 1.15826 1.20402 1.85294 1.11595 1.35843 1.65768 0.88222 0.88493 0.87694 0.91543 0.88309 0.93812 0.91168 0.95533 0.89444 0.99081 0.95154 0.92869 0.95077 0.90677 0.90840 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.08 16 2 C 0.17 1.79 8.51 -13.06 -0.11 1.68 16 3 N -0.48 -6.41 10.77 -9.87 -0.11 -6.52 16 4 C 0.19 2.65 6.83 -156.38 -1.07 1.59 16 5 C 0.14 1.93 5.59 -4.98 -0.03 1.90 16 6 N -0.54 -8.57 4.70 -235.90 -1.11 -9.68 16 7 C 0.06 1.03 5.44 -3.76 -0.02 1.01 16 8 C 0.07 1.44 5.43 -3.77 -0.02 1.41 16 9 N -0.54 -12.02 4.70 -235.91 -1.11 -13.12 16 10 C 0.19 5.17 4.72 -4.98 -0.02 5.15 16 11 C -0.51 -14.47 8.47 -34.44 -0.29 -14.76 16 12 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 15 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 20 C 0.06 0.97 5.61 -3.77 -0.02 0.95 16 21 N -0.37 -5.40 12.16 30.90 0.38 -5.03 16 22 O 0.07 0.91 11.31 18.12 0.20 1.12 16 23 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 27 H 0.10 1.15 8.03 -51.93 -0.42 0.73 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.21 6.59 -51.93 -0.34 0.86 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.93 6.79 -51.93 -0.35 1.57 16 32 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 33 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 37 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -33.05 314.19 -8.30 -41.35 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -5.68 Total: -4.90 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.32 Total: 1.55 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -1.21 Total: -60.64 kcal Atomic # 8 Polarization: 0.91 SS G_CDS: 0.20 Total: 1.12 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.05 -8.30 -41.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114466029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.690 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds