Wall clock time and date at job start Mon Mar 30 2020 00:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 C 1.52993 * 109.47144 * 239.99707 * 2 1 3 5 5 N 1.46500 * 109.46483 * 119.99495 * 2 1 3 6 6 C 1.34779 * 119.99738 * 60.00473 * 5 2 1 7 7 O 1.21589 * 120.00349 * 359.97438 * 6 5 2 8 8 N 1.34787 * 119.99663 * 179.97438 * 6 5 2 9 9 C 1.40196 * 119.99563 * 179.97438 * 8 6 5 10 10 C 1.40395 * 125.97533 * 359.97438 * 9 8 6 11 11 C 1.35243 * 107.86535 * 179.71691 * 10 9 8 12 12 N 1.34960 * 107.86064 * 0.42509 * 11 10 9 13 13 C 1.46500 * 125.97985 * 179.83521 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71356 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.31213 * 125.96849 * 179.97438 * 9 8 6 23 23 H 1.08997 * 109.47510 * 300.00632 * 1 2 3 24 24 H 1.09006 * 109.46867 * 60.00722 * 1 2 3 25 25 H 1.09000 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46814 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.46680 * 299.99392 * 3 2 1 28 28 H 1.08999 * 109.46986 * 59.99539 * 3 2 1 29 29 H 1.09006 * 109.47127 * 299.99750 * 4 2 1 30 30 H 1.08993 * 109.47875 * 60.00066 * 4 2 1 31 31 H 1.08999 * 109.47193 * 180.02562 * 4 2 1 32 32 H 0.96998 * 120.00159 * 239.99976 * 5 2 1 33 33 H 0.96998 * 119.99666 * 359.97438 * 8 6 5 34 34 H 1.08003 * 126.06887 * 0.02562 * 10 9 8 35 35 H 1.08007 * 126.06985 * 180.26350 * 11 10 9 36 36 H 1.09004 * 109.47078 * 4.72118 * 13 12 11 37 37 H 1.08993 * 109.47364 * 244.71890 * 13 12 11 38 38 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0182 -0.6905 1.1963 6 6 1.6926 -1.9809 1.4095 7 8 0.9933 -2.5717 0.6094 8 7 2.1422 -2.6163 2.5099 9 6 1.8030 -3.9584 2.7320 10 6 1.0068 -4.7571 1.8958 11 6 0.9217 -5.9860 2.4540 12 7 1.6273 -5.9679 3.6043 13 6 1.7964 -7.0923 4.5281 14 6 3.2658 -7.3473 4.7454 15 1 4.0001 -6.7330 4.2457 16 6 3.6726 -8.3649 5.5820 17 7 2.7783 -9.1096 6.1947 18 14 5.4938 -8.6805 5.8519 19 1 5.9815 -9.6568 4.8448 20 1 6.2434 -7.4065 5.7097 21 1 5.7044 -9.2291 7.2156 22 7 2.1742 -4.6875 3.7578 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9563 0.8899 29 1 1.6767 -1.7490 -1.2491 30 1 1.6768 -0.2076 -2.1392 31 1 3.1300 -0.7217 -1.2489 32 1 2.5759 -0.2191 1.8348 33 1 2.7003 -2.1451 3.1480 34 1 0.5481 -4.4468 0.9686 35 1 0.3825 -6.8311 2.0520 36 1 1.3318 -7.9830 4.1051 37 1 1.3242 -6.8538 5.4810 38 1 1.8326 -8.9456 6.0548 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135933458.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:18 Heat of formation + Delta-G solvation = 23.023269 kcal Electronic energy + Delta-G solvation = -19964.539445 eV Core-core repulsion = 16843.012448 eV Total energy + Delta-G solvation = -3121.526997 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.30824 -41.16638 -37.95756 -36.24409 -35.50597 -33.34399 -31.95713 -30.96307 -28.22211 -28.14340 -28.09974 -25.22180 -23.60401 -22.28084 -21.29013 -20.65464 -19.27025 -19.15072 -18.18330 -17.04415 -16.66910 -16.17879 -15.88293 -15.76562 -15.55894 -15.08461 -14.95285 -14.45035 -14.20353 -13.90380 -13.70086 -13.29209 -13.11730 -13.04359 -12.95527 -12.61490 -12.53218 -12.14297 -12.00499 -11.97556 -11.86318 -11.58798 -10.99120 -10.80997 -10.68696 -10.16419 -9.79013 -9.12984 -8.76669 -6.55895 1.00870 1.12019 1.50510 1.58417 1.68225 1.78408 2.06210 2.40793 2.48532 3.01124 3.13068 3.84756 3.92856 4.04629 4.15585 4.17388 4.57130 4.68645 4.75482 4.75628 4.78203 4.81411 4.87976 4.91413 4.99304 5.05533 5.11496 5.26736 5.45534 5.46663 5.55256 5.66758 5.83979 5.89028 5.98638 6.28103 6.42602 6.74766 7.12682 7.20295 7.49076 8.58311 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.038932 B = 0.003621 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.035126 B = 7731.477095 C = 8110.874004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.182 3.818 3 C -0.147 4.147 4 C -0.164 4.164 5 N -0.719 5.719 6 C 0.711 3.289 7 O -0.590 6.590 8 N -0.640 5.640 9 C 0.288 3.712 10 C -0.288 4.288 11 C 0.054 3.946 12 N -0.345 5.345 13 C 0.260 3.740 14 C -0.621 4.621 15 H 0.045 0.955 16 C -0.019 4.019 17 N -0.924 5.924 18 Si 1.123 2.877 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.275 1.275 22 N -0.350 5.350 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.411 0.589 33 H 0.419 0.581 34 H 0.170 0.830 35 H 0.200 0.800 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.780 20.556 -12.592 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.097 3.903 3 C -0.204 4.204 4 C -0.222 4.222 5 N -0.376 5.376 6 C 0.411 3.589 7 O -0.467 6.467 8 N -0.292 5.292 9 C 0.032 3.968 10 C -0.319 4.319 11 C -0.094 4.094 12 N -0.127 5.127 13 C 0.140 3.860 14 C -0.659 4.659 15 H 0.063 0.937 16 C -0.219 4.219 17 N -0.560 5.560 18 Si 0.944 3.056 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.200 1.200 22 N -0.181 5.181 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.248 0.752 33 H 0.256 0.744 34 H 0.187 0.813 35 H 0.217 0.783 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.701 19.003 -11.383 22.162 hybrid contribution -1.271 1.023 -0.655 1.758 sum -1.972 20.026 -12.038 23.449 Atomic orbital electron populations 1.22232 0.94766 1.02519 1.02613 1.20404 0.94010 0.92720 0.83124 1.22049 1.02194 0.91880 1.04299 1.22235 1.00999 1.01488 0.97482 1.45245 1.56211 1.08837 1.27288 1.15867 0.80077 0.82463 0.80523 1.90779 1.42643 1.66595 1.46726 1.41521 1.54507 1.07725 1.25431 1.19112 0.97392 0.85995 0.94274 1.21711 1.11775 0.92588 1.05861 1.23166 0.97704 1.00576 0.87995 1.48530 1.37343 1.08288 1.18567 1.19405 0.98204 0.80999 0.87350 1.22317 0.91608 1.19631 1.32366 0.93710 1.27294 1.10750 0.92008 0.91837 1.70915 1.02633 1.40227 1.42251 0.82839 0.68780 0.76569 0.77442 1.19346 1.20531 1.20008 1.77258 1.25506 0.91916 1.23421 0.92453 0.90104 0.93247 0.91016 0.89213 0.90934 0.93284 0.90068 0.92563 0.75216 0.74421 0.81280 0.78294 0.92882 0.96631 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.40 71.98 0.60 -2.33 16 2 C 0.18 2.91 1.06 3.60 0.00 2.92 16 3 C -0.15 -1.25 8.59 71.98 0.62 -0.63 16 4 C -0.16 -3.01 8.40 71.98 0.60 -2.41 16 5 N -0.72 -13.31 5.11 -437.99 -2.24 -15.54 16 6 C 0.71 20.09 7.95 179.05 1.42 21.52 16 7 O -0.59 -20.21 9.67 -4.00 -0.04 -20.25 16 8 N -0.64 -19.72 5.46 -321.22 -1.75 -21.47 16 9 C 0.29 11.79 8.11 133.31 1.08 12.87 16 10 C -0.29 -11.55 9.61 22.10 0.21 -11.34 16 11 C 0.05 2.17 11.44 83.52 0.96 3.12 16 12 N -0.35 -16.62 3.67 -351.84 -1.29 -17.91 16 13 C 0.26 13.61 5.57 85.64 0.48 14.09 16 14 C -0.62 -35.87 9.24 25.60 0.24 -35.63 16 15 H 0.04 2.71 7.81 -2.91 -0.02 2.69 16 16 C -0.02 -1.09 5.46 84.65 0.46 -0.63 16 17 N -0.92 -54.49 13.65 21.45 0.29 -54.20 16 18 Si 1.12 50.17 29.90 68.60 2.05 52.22 16 19 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 22 N -0.35 -16.71 12.42 -54.44 -0.68 -17.39 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 24 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.05 1.25 6.16 -2.39 -0.01 1.24 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 1.27 6.16 -2.38 -0.01 1.25 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.41 5.05 8.49 -92.71 -0.79 4.26 16 33 H 0.42 10.37 8.84 -92.71 -0.82 9.55 16 34 H 0.17 6.57 5.91 -2.91 -0.02 6.55 16 35 H 0.20 6.38 8.06 -2.91 -0.02 6.36 16 36 H 0.05 2.66 7.94 -2.39 -0.02 2.65 16 37 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 38 H 0.26 15.23 7.22 -92.71 -0.67 14.56 16 Total: -1.00 -73.05 316.61 2.61 -70.45 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.42 Total: 22.55 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 6.68 Total: 1.54 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.66 Total: -126.51 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.04 Total: -20.25 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 2.05 Total: 52.22 kcal Total: -73.05 2.61 -70.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135933458.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.470 kcal (2) G-P(sol) polarization free energy of solvation -73.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds