Wall clock time and date at job start Mon Mar 30 2020 01:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46793 * 120.00131 * 9 7 5 12 12 H 1.48500 * 109.47000 * 240.00224 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21599 * 120.00265 * 0.02562 * 14 13 3 16 16 N 1.34778 * 120.00019 * 180.02562 * 14 13 3 17 17 C 1.40846 * 120.00144 * 179.97438 * 16 14 13 18 18 C 1.40240 * 126.07411 * 0.02770 * 17 16 14 19 19 N 1.30839 * 108.33922 * 179.97438 * 18 17 16 20 20 N 1.40068 * 108.36576 * 359.97438 * 19 18 17 21 21 C 1.46499 * 126.05960 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47444 * 304.98430 * 21 20 19 23 23 C 1.35733 * 126.07642 * 179.71490 * 17 16 14 24 24 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 26 26 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 27 27 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 28 28 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 29 29 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 31 31 H 0.97000 * 120.00044 * 0.02562 * 16 14 13 32 32 H 1.07990 * 125.82877 * 359.92137 * 18 17 16 33 33 H 1.09005 * 109.46803 * 64.98164 * 21 20 19 34 34 H 1.08996 * 109.47301 * 184.97614 * 21 20 19 35 35 H 1.08996 * 109.47537 * 59.99329 * 22 21 20 36 36 H 1.09004 * 109.47182 * 180.02562 * 22 21 20 37 37 H 1.09005 * 109.46903 * 299.99673 * 22 21 20 38 38 H 1.07994 * 126.21399 * 0.03923 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.5988 1.5451 0.1936 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5191 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3412 2.6326 -0.4317 16 7 0.0785 3.2665 -2.5188 17 6 -1.1938 3.8585 -2.6393 18 6 -2.1843 3.8963 -1.6473 19 7 -3.2239 4.5293 -2.1274 20 7 -2.9353 4.9187 -3.4416 21 6 -3.8299 5.6533 -4.3395 22 6 -5.1586 4.9044 -4.4606 23 6 -1.6770 4.4988 -3.7342 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.8294 -0.0618 2.9495 30 1 2.2719 2.1231 -1.9978 31 1 0.6977 3.2915 -3.2650 32 1 -2.1032 3.4743 -0.6566 33 1 -4.0101 6.6502 -3.9371 34 1 -3.3687 5.7367 -5.3235 35 1 -5.6197 4.8211 -3.4765 36 1 -5.8240 5.4508 -5.1290 37 1 -4.9784 3.9075 -4.8629 38 1 -1.1564 4.6457 -4.6690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155607385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:23 Heat of formation + Delta-G solvation = 47.312791 kcal Electronic energy + Delta-G solvation = -20142.420046 eV Core-core repulsion = 17021.946321 eV Total energy + Delta-G solvation = -3120.473724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.07877 -39.21113 -35.57779 -34.46888 -33.61858 -32.28750 -30.78786 -30.07863 -28.17052 -26.67251 -23.81717 -23.08452 -21.60866 -20.95621 -19.92057 -19.43472 -17.78736 -17.25674 -16.17003 -15.66813 -15.44090 -15.02687 -14.65838 -14.19532 -13.99440 -13.78041 -13.25932 -12.72077 -12.64230 -12.53388 -12.33454 -12.12271 -11.62601 -11.51967 -11.23403 -10.93068 -10.84133 -10.54308 -10.31082 -10.28416 -10.12307 -9.56137 -9.25508 -9.20125 -8.99650 -8.48363 -7.89821 -7.29756 -6.10654 -4.19585 1.97161 2.50717 3.03947 3.24733 3.31671 3.34248 3.43100 4.09119 4.34200 4.45970 4.77066 4.85382 4.98419 5.07816 5.21315 5.29582 5.37613 5.55150 5.78888 5.85581 5.96876 6.45799 6.53714 6.56257 6.72352 7.05470 7.08913 7.17342 7.28895 7.41042 7.43347 7.53628 7.67362 7.86849 7.92616 8.07618 8.22370 8.78243 8.91541 9.33564 9.50247 10.94733 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.045758 B = 0.003788 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.764326 B = 7389.107199 C = 7709.812746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.720 5.720 14 C 0.698 3.302 15 O -0.582 6.582 16 N -0.672 5.672 17 C 0.043 3.957 18 C 0.053 3.947 19 N -0.290 5.290 20 N -0.381 5.381 21 C 0.141 3.859 22 C -0.166 4.166 23 C -0.009 4.009 24 H 0.020 0.980 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.030 0.970 28 H 0.099 0.901 29 H 0.264 0.736 30 H 0.385 0.615 31 H 0.400 0.600 32 H 0.209 0.791 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 7.561 -14.628 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.371 5.371 14 C 0.398 3.602 15 O -0.460 6.460 16 N -0.320 5.320 17 C -0.063 4.063 18 C -0.134 4.134 19 N -0.112 5.112 20 N -0.168 5.168 21 C 0.019 3.981 22 C -0.224 4.224 23 C -0.156 4.156 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.217 0.783 31 H 0.233 0.767 32 H 0.226 0.774 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -11.389 7.858 -13.370 19.241 hybrid contribution 2.550 -0.319 -0.929 2.732 sum -8.840 7.539 -14.299 18.424 Atomic orbital electron populations 1.21818 0.98233 0.97876 1.01381 1.21953 0.92749 0.99880 1.02147 1.18706 0.93919 0.88873 0.80017 0.93168 1.21269 0.90748 1.38789 1.06353 0.92085 1.24879 0.98548 0.94880 0.95387 1.69907 1.34984 1.37635 1.09334 0.86406 0.84932 0.77730 0.78082 1.19798 1.20918 1.20907 1.45771 1.13242 1.58862 1.19262 1.15993 0.83554 0.78687 0.81972 1.90755 1.51817 1.64899 1.38491 1.42140 1.14280 1.59504 1.16110 1.17564 0.88444 1.05110 0.95199 1.24646 0.88997 0.98391 1.01394 1.77307 1.23749 1.18735 0.91373 1.48318 1.11341 1.46056 1.11096 1.21517 0.90130 0.94780 0.91660 1.22068 0.96042 1.00827 1.03434 1.21697 0.88539 1.05353 0.99974 0.96085 0.93087 0.94167 0.95162 0.88328 0.92621 0.78321 0.76652 0.77449 0.90233 0.89083 0.91046 0.91024 0.92132 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.29 7.11 2.24 -69.08 -0.15 6.96 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.51 11.29 55.43 0.63 -23.89 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.72 -14.60 5.03 -59.81 -0.30 -14.90 16 14 C 0.70 13.80 7.10 -86.93 -0.62 13.18 16 15 O -0.58 -13.31 10.63 5.28 0.06 -13.25 16 16 N -0.67 -10.34 5.48 -14.39 -0.08 -10.42 16 17 C 0.04 0.67 6.90 -83.86 -0.58 0.09 16 18 C 0.05 0.93 10.84 -17.22 -0.19 0.75 16 19 N -0.29 -4.68 12.41 30.70 0.38 -4.29 16 20 N -0.38 -4.81 3.70 -61.03 -0.23 -5.04 16 21 C 0.14 1.14 7.24 -4.04 -0.03 1.11 16 22 C -0.17 -1.27 10.10 37.16 0.38 -0.90 16 23 C -0.01 -0.11 11.52 -16.67 -0.19 -0.30 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 26 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 30 H 0.38 6.68 8.55 -40.82 -0.35 6.33 16 31 H 0.40 4.67 8.84 -40.82 -0.36 4.31 16 32 H 0.21 4.04 5.91 -52.49 -0.31 3.73 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -31.55 314.68 -6.77 -38.32 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -5.34 Total: 10.91 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.61 Total: 2.38 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.40 Total: -58.54 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.06 Total: -13.25 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.55 -6.77 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155607385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.636 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds