Wall clock time and date at job start Mon Mar 30 2020 01:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47342 * 2 1 4 4 H 1.08997 * 109.47563 * 54.99885 * 3 2 1 5 5 C 1.50695 * 109.47448 * 175.00253 * 3 2 1 6 6 H 1.08004 * 120.00546 * 120.27461 * 5 3 2 7 7 C 1.37885 * 119.99721 * 299.99712 * 5 3 2 8 8 N 1.31514 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99853 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46793 * 120.00131 * 9 7 5 12 12 H 1.48500 * 109.47000 * 240.00224 * 9 7 5 13 13 N 1.46506 * 109.47094 * 295.00136 * 3 2 1 14 14 C 1.34767 * 120.00042 * 84.99823 * 13 3 2 15 15 O 1.21599 * 120.00265 * 0.02562 * 14 13 3 16 16 N 1.34778 * 120.00019 * 180.02562 * 14 13 3 17 17 C 1.40846 * 120.00144 * 179.97438 * 16 14 13 18 18 C 1.40240 * 126.07411 * 0.02770 * 17 16 14 19 19 N 1.30839 * 108.33922 * 179.97438 * 18 17 16 20 20 N 1.40068 * 108.36576 * 359.97438 * 19 18 17 21 21 C 1.46499 * 126.05960 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47444 * 304.98430 * 21 20 19 23 23 C 1.35733 * 126.07642 * 179.71490 * 17 16 14 24 24 H 1.08997 * 109.47491 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47014 * 300.00240 * 1 2 3 26 26 H 1.08997 * 109.46959 * 60.00091 * 1 2 3 27 27 H 1.09001 * 109.47014 * 239.99760 * 2 1 3 28 28 H 1.09007 * 109.47025 * 119.99887 * 2 1 3 29 29 H 0.97000 * 119.99706 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00021 * 265.00203 * 13 3 2 31 31 H 0.97000 * 120.00044 * 0.02562 * 16 14 13 32 32 H 1.07990 * 125.82877 * 359.92137 * 18 17 16 33 33 H 1.09005 * 109.46803 * 64.98164 * 21 20 19 34 34 H 1.08996 * 109.47301 * 184.97614 * 21 20 19 35 35 H 1.08996 * 109.47537 * 59.99329 * 22 21 20 36 36 H 1.09004 * 109.47182 * 180.02562 * 22 21 20 37 37 H 1.09005 * 109.46903 * 299.99673 * 22 21 20 38 38 H 1.07994 * 126.21399 * 0.03923 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8928 -0.6502 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8800 1.3811 10 1 6.5988 1.5451 0.1936 11 1 6.4000 1.6157 2.6091 12 1 6.4962 -0.5191 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6643 -1.3670 15 8 -0.3412 2.6326 -0.4317 16 7 0.0785 3.2665 -2.5188 17 6 -1.1938 3.8585 -2.6393 18 6 -2.1843 3.8963 -1.6473 19 7 -3.2239 4.5293 -2.1274 20 7 -2.9353 4.9187 -3.4416 21 6 -3.8299 5.6533 -4.3395 22 6 -5.1586 4.9044 -4.4606 23 6 -1.6770 4.4988 -3.7342 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 3.8294 -0.0618 2.9495 30 1 2.2719 2.1231 -1.9978 31 1 0.6977 3.2915 -3.2650 32 1 -2.1032 3.4743 -0.6566 33 1 -4.0101 6.6502 -3.9371 34 1 -3.3687 5.7367 -5.3235 35 1 -5.6197 4.8211 -3.4765 36 1 -5.8240 5.4508 -5.1290 37 1 -4.9784 3.9075 -4.8629 38 1 -1.1564 4.6457 -4.6690 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155607385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:22 Heat of formation + Delta-G solvation = 24.497524 kcal Electronic energy + Delta-G solvation = -20143.409390 eV Core-core repulsion = 17021.946321 eV Total energy + Delta-G solvation = -3121.463069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.23218 -40.73151 -37.23589 -35.75829 -34.80307 -34.13335 -32.58397 -31.09022 -29.50631 -28.40631 -25.04050 -24.63372 -23.10682 -21.99469 -21.43970 -21.11843 -19.34953 -18.41503 -17.83078 -17.16060 -16.65136 -16.49539 -16.12814 -15.69087 -15.29641 -14.95042 -14.61770 -14.50175 -14.00683 -13.71221 -13.53518 -13.30853 -13.14262 -12.90682 -12.80796 -12.67870 -12.34151 -12.11771 -12.02310 -11.68232 -11.58070 -11.44653 -11.00750 -10.87843 -10.50113 -10.27877 -9.64120 -8.50738 -8.12267 -6.28905 0.91289 1.46775 1.47352 1.54195 1.59979 1.73442 2.06359 2.45866 2.60318 3.17519 3.62097 3.75467 4.04005 4.16521 4.27736 4.44373 4.54983 4.62962 4.63891 4.65970 4.81161 4.87382 4.99220 5.11843 5.24903 5.30431 5.35220 5.50507 5.60414 5.67576 5.83124 5.92740 5.96108 6.20947 6.23194 6.39058 6.76376 6.80306 7.38184 7.42328 7.86413 8.93377 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.045758 B = 0.003788 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.764326 B = 7389.107199 C = 7709.812746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.280 1.280 13 N -0.716 5.716 14 C 0.694 3.306 15 O -0.618 6.618 16 N -0.650 5.650 17 C 0.003 3.997 18 C 0.024 3.976 19 N -0.316 5.316 20 N -0.371 5.371 21 C 0.127 3.873 22 C -0.162 4.162 23 C 0.031 3.969 24 H 0.041 0.959 25 H 0.025 0.975 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.264 0.736 30 H 0.401 0.599 31 H 0.420 0.580 32 H 0.176 0.824 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 8.700 -18.273 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.183 1.183 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.369 5.369 14 C 0.394 3.606 15 O -0.499 6.499 16 N -0.300 5.300 17 C -0.102 4.102 18 C -0.162 4.162 19 N -0.140 5.140 20 N -0.157 5.157 21 C 0.008 3.992 22 C -0.220 4.220 23 C -0.117 4.117 24 H 0.060 0.940 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.236 0.764 31 H 0.258 0.742 32 H 0.193 0.807 33 H 0.108 0.892 34 H 0.153 0.847 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -10.756 9.033 -17.090 22.121 hybrid contribution 2.182 -0.556 0.096 2.253 sum -8.575 8.477 -16.994 20.837 Atomic orbital electron populations 1.21638 0.97113 0.98743 1.00258 1.21797 0.93607 0.99363 1.01197 1.18238 0.93356 0.88734 0.80332 0.98348 1.21610 0.91395 1.38563 1.06722 0.90915 1.25763 1.03213 0.94513 0.95062 1.70064 1.36932 1.38470 1.09894 0.85324 0.79252 0.77736 0.78153 1.18343 1.21239 1.20547 1.45348 1.14035 1.59106 1.18429 1.16104 0.82917 0.78803 0.82792 1.90763 1.52746 1.66074 1.40307 1.41683 1.14783 1.58394 1.15172 1.17758 0.88334 1.07873 0.96243 1.24267 0.90787 1.00002 1.01187 1.77243 1.23614 1.19548 0.93597 1.48874 1.12103 1.44563 1.10178 1.22063 0.89895 0.94547 0.92672 1.22041 0.96408 1.00962 1.02587 1.22438 0.87655 1.01423 1.00227 0.94036 0.95574 0.93908 0.94072 0.91048 0.92676 0.76393 0.74208 0.80749 0.89195 0.84739 0.93703 0.87917 0.92895 0.75907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.96 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.30 15.19 2.24 44.24 0.10 15.29 16 4 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 5 C -0.54 -28.51 8.73 25.60 0.22 -28.28 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.92 -52.39 11.29 21.45 0.24 -52.15 16 9 Si 0.97 41.88 29.54 68.60 2.03 43.90 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.72 -29.17 5.03 -461.42 -2.32 -31.48 16 14 C 0.69 27.87 7.10 179.06 1.27 29.14 16 15 O -0.62 -29.89 10.63 -4.03 -0.04 -29.94 16 16 N -0.65 -19.23 5.48 -317.70 -1.74 -20.97 16 17 C 0.00 0.09 6.90 37.60 0.26 0.35 16 18 C 0.02 0.86 10.84 85.33 0.92 1.78 16 19 N -0.32 -10.26 12.41 -56.78 -0.70 -10.96 16 20 N -0.37 -8.37 3.70 -346.98 -1.29 -9.65 16 21 C 0.13 1.55 7.24 86.38 0.63 2.18 16 22 C -0.16 -2.07 10.10 71.98 0.73 -1.34 16 23 C 0.03 0.64 11.52 83.49 0.96 1.60 16 24 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.03 1.30 7.84 -2.39 -0.02 1.28 16 26 H 0.04 1.93 5.64 -2.39 -0.01 1.92 16 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 3.96 5.95 -2.38 -0.01 3.95 16 29 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.40 13.46 8.55 -92.71 -0.79 12.67 16 31 H 0.42 8.66 8.84 -92.71 -0.82 7.84 16 32 H 0.18 7.47 5.91 -2.92 -0.02 7.45 16 33 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.13 0.57 8.07 -2.39 -0.02 0.55 16 35 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.22 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -73.30 314.68 1.97 -71.33 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.53 Total: 28.74 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 6.32 Total: 11.18 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -5.81 Total: -125.22 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.04 Total: -29.94 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -73.30 1.97 -71.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155607385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.832 kcal (2) G-P(sol) polarization free energy of solvation -73.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds