Wall clock time and date at job start Mon Mar 30 2020 00:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 120.00280 * 2 1 4 4 C 1.50699 * 109.46858 * 269.99780 * 3 2 1 5 5 H 1.07999 * 119.99941 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00061 * 180.02562 * 4 3 2 7 7 N 1.31521 * 120.00196 * 179.97438 * 6 4 3 8 8 Si 1.86804 * 120.00070 * 359.97438 * 6 4 3 9 9 H 1.48497 * 109.46908 * 90.00390 * 8 6 4 10 10 H 1.48497 * 109.47290 * 210.00548 * 8 6 4 11 11 H 1.48498 * 109.47102 * 330.00395 * 8 6 4 12 12 C 1.34778 * 119.99594 * 179.97438 * 2 1 3 13 13 O 1.21560 * 119.99560 * 174.56273 * 12 2 1 14 14 C 1.47872 * 120.00218 * 354.83987 * 12 2 1 15 15 N 1.34540 * 126.04832 * 353.15075 * 14 12 2 16 16 C 1.30868 * 107.27024 * 179.87049 * 15 14 12 17 17 N 1.34587 * 107.62586 * 0.38291 * 16 15 14 18 18 C 1.46492 * 125.75281 * 179.73391 * 17 16 15 19 19 C 1.52999 * 109.47244 * 74.99982 * 18 17 16 20 20 C 1.53002 * 109.47165 * 195.00622 * 18 17 16 21 21 C 1.53007 * 109.47056 * 315.00154 * 18 17 16 22 22 N 1.28853 * 108.49871 * 359.75795 * 17 16 15 23 23 H 1.08998 * 109.47450 * 265.38988 * 1 2 3 24 24 H 1.08999 * 109.46588 * 25.39542 * 1 2 3 25 25 H 1.08997 * 109.46721 * 145.38673 * 1 2 3 26 26 H 1.09009 * 109.47342 * 29.99167 * 3 2 1 27 27 H 1.08996 * 109.47874 * 149.99369 * 3 2 1 28 28 H 0.96995 * 120.00063 * 179.97438 * 7 6 4 29 29 H 1.08006 * 126.18871 * 180.13917 * 16 15 14 30 30 H 1.09002 * 109.47134 * 60.00293 * 19 18 17 31 31 H 1.09004 * 109.47158 * 179.97438 * 19 18 17 32 32 H 1.08999 * 109.47162 * 300.00355 * 19 18 17 33 33 H 1.08991 * 109.47357 * 59.99674 * 20 18 17 34 34 H 1.09006 * 109.46678 * 180.02562 * 20 18 17 35 35 H 1.09002 * 109.46811 * 299.99461 * 20 18 17 36 36 H 1.08999 * 109.46985 * 59.99868 * 21 18 17 37 37 H 1.08996 * 109.47226 * 180.02562 * 21 18 17 38 38 H 1.09003 * 109.46906 * 299.99829 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7036 -1.4208 5 1 2.0982 1.0955 -2.2417 6 6 3.1271 2.8772 -1.6728 7 7 3.3468 3.2566 -2.9128 8 14 3.7341 3.9286 -0.2531 9 1 5.1072 3.5067 0.1235 10 1 3.7500 5.3552 -0.6650 11 1 2.8276 3.7596 0.9109 12 6 2.1389 -1.1673 0.0005 13 8 3.3504 -1.1697 -0.0992 14 6 1.4040 -2.4452 0.1163 15 7 0.0872 -2.5824 0.3558 16 6 -0.1715 -3.8650 0.3812 17 7 0.9853 -4.5184 0.1662 18 6 1.1507 -5.9732 0.1195 19 6 0.5974 -6.5072 -1.2032 20 6 2.6365 -6.3213 0.2286 21 6 0.3907 -6.6106 1.2846 22 7 1.9229 -3.6487 0.0089 23 1 -0.3634 -0.0826 1.0243 24 1 -0.3632 0.9284 -0.4407 25 1 -0.3633 -0.8458 -0.5837 26 1 1.6085 2.0284 0.5137 27 1 3.1500 1.1384 0.5139 28 1 3.8236 4.0824 -3.0901 29 1 -1.1378 -4.3174 0.5488 30 1 1.1388 -6.0532 -2.0332 31 1 0.7209 -7.5897 -1.2381 32 1 -0.4612 -6.2592 -1.2808 33 1 3.0306 -5.9409 1.1709 34 1 2.7596 -7.4039 0.1934 35 1 3.1779 -5.8673 -0.6014 36 1 -0.6678 -6.3625 1.2070 37 1 0.5142 -7.6930 1.2502 38 1 0.7849 -6.2301 2.2270 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291030461.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:45 Heat of formation + Delta-G solvation = 69.464279 kcal Electronic energy + Delta-G solvation = -20432.945687 eV Core-core repulsion = 17313.432524 eV Total energy + Delta-G solvation = -3119.513164 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 5.35 seconds Orbital eigenvalues (eV) -43.35758 -38.77384 -37.38964 -34.88363 -32.71438 -32.21596 -30.87392 -28.46197 -27.95853 -27.79321 -25.91026 -24.35104 -22.87896 -21.81132 -20.12486 -18.96720 -17.13456 -16.88716 -16.45460 -16.08881 -15.63556 -14.78353 -14.52171 -14.44329 -14.19309 -13.60109 -13.23732 -12.92502 -12.83085 -12.71445 -12.32043 -12.24786 -12.20646 -12.11466 -11.77633 -11.69248 -11.42773 -11.18232 -10.88445 -10.45747 -10.27643 -10.07618 -9.92210 -9.49606 -9.32162 -9.24221 -8.51202 -7.59397 -6.00738 -3.99151 1.69331 2.17555 2.40043 3.35799 3.41507 3.43485 3.65993 4.00155 4.02105 4.24854 4.33458 4.35318 4.46873 4.77244 4.95530 4.97028 5.12536 5.16024 5.26415 5.30965 5.33332 5.39651 5.49575 5.70087 5.91278 6.05210 6.19505 6.25439 6.42947 6.55441 6.68529 6.82571 6.98805 7.42492 7.67577 8.14215 8.35733 8.54478 8.97159 9.05138 9.59055 11.12816 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.038844 B = 0.004307 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.661741 B = 6499.700761 C = 6674.151004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.577 5.577 3 C 0.218 3.782 4 C -0.527 4.527 5 H 0.075 0.925 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.599 3.401 13 O -0.519 6.519 14 C 0.156 3.844 15 N -0.478 5.478 16 C 0.176 3.824 17 N -0.298 5.298 18 C 0.168 3.832 19 C -0.160 4.160 20 C -0.149 4.149 21 C -0.159 4.159 22 N -0.254 5.254 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.264 0.736 29 H 0.217 0.783 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.299 -21.687 8.494 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.308 5.308 3 C 0.097 3.903 4 C -0.565 4.565 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.381 3.619 13 O -0.392 6.392 14 C -0.124 4.124 15 N -0.204 5.204 16 C -0.119 4.119 17 N -0.095 5.095 18 C 0.085 3.915 19 C -0.218 4.218 20 C -0.206 4.206 21 C -0.217 4.217 22 N -0.092 5.092 23 H 0.066 0.934 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.233 0.767 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.094 -21.336 8.259 24.620 hybrid contribution -0.061 0.344 0.565 0.665 sum -9.155 -20.992 8.824 24.543 Atomic orbital electron populations 1.21839 0.79442 1.02813 1.01125 1.47585 1.07235 1.05855 1.70156 1.19749 0.92377 0.79538 0.98587 1.21335 1.36837 1.07131 0.91217 0.90647 1.24850 0.95236 0.97311 0.95596 1.69903 1.41586 1.23560 1.18650 0.86851 0.80165 0.79712 0.82990 1.19878 1.21076 1.18964 1.16346 0.85871 0.80834 0.78816 1.90797 1.12915 1.85954 1.49575 1.24161 0.88595 0.93713 1.05966 1.71568 1.13947 1.15148 1.19741 1.26381 0.94126 0.88549 1.02831 1.47745 1.05615 1.07901 1.48235 1.21086 0.99350 0.73298 0.97732 1.22261 1.01880 1.02257 0.95388 1.21990 0.92004 1.01998 1.04645 1.22246 1.00485 1.01920 0.97026 1.74321 1.17107 0.98822 1.18901 0.93406 0.91352 0.90422 0.94665 0.94538 0.92610 0.76659 0.91149 0.89790 0.91400 0.91276 0.90536 0.90410 0.91199 0.89532 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 9.31 59.85 0.56 2.26 16 2 N -0.58 -13.47 2.86 -184.06 -0.53 -13.99 16 3 C 0.22 5.66 4.17 -5.20 -0.02 5.64 16 4 C -0.53 -15.86 9.94 -34.44 -0.34 -16.20 16 5 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 6 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 7 N -0.90 -28.49 13.96 55.43 0.77 -27.71 16 8 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 9 H -0.27 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 12 C 0.60 14.39 7.67 -12.32 -0.09 14.30 16 13 O -0.52 -14.37 16.72 5.31 0.09 -14.28 16 14 C 0.16 3.09 7.57 -156.36 -1.18 1.90 16 15 N -0.48 -7.73 8.14 -12.36 -0.10 -7.83 16 16 C 0.18 2.07 11.71 -90.48 -1.06 1.01 16 17 N -0.30 -3.76 3.17 -49.84 -0.16 -3.92 16 18 C 0.17 1.36 1.23 -131.82 -0.16 1.20 16 19 C -0.16 -1.02 8.72 37.16 0.32 -0.70 16 20 C -0.15 -1.29 8.04 37.16 0.30 -0.99 16 21 C -0.16 -0.80 8.28 37.16 0.31 -0.49 16 22 N -0.25 -4.54 11.10 32.07 0.36 -4.18 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.07 1.25 8.04 -51.93 -0.42 0.84 16 25 H 0.08 1.40 5.87 -51.93 -0.30 1.09 16 26 H 0.04 0.86 7.13 -51.92 -0.37 0.49 16 27 H 0.04 0.99 6.93 -51.93 -0.36 0.63 16 28 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 29 H 0.22 1.38 7.53 -52.48 -0.40 0.99 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.85 8.02 -51.93 -0.42 0.43 16 36 H 0.07 0.25 7.34 -51.93 -0.38 -0.13 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -37.81 318.62 -6.52 -44.33 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -5.62 Total: -4.68 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -1.47 Total: 10.02 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.35 Total: -57.64 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.09 Total: -14.28 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -37.81 -6.52 -44.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291030461.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.793 kcal (2) G-P(sol) polarization free energy of solvation -37.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.35 seconds