Wall clock time and date at job start Mon Mar 30 2020 01:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46742 * 2 1 4 4 H 1.09005 * 109.47419 * 305.55355 * 3 2 1 5 5 C 1.50703 * 109.46832 * 185.55324 * 3 2 1 6 6 H 1.07996 * 120.00070 * 245.60345 * 5 3 2 7 7 C 1.37884 * 119.99980 * 65.60778 * 5 3 2 8 8 N 1.31506 * 120.00184 * 196.28674 * 7 5 3 9 9 Si 1.86802 * 119.99719 * 16.28732 * 7 5 3 10 10 H 1.48507 * 109.46855 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47321 * 299.99876 * 9 7 5 12 12 H 1.48500 * 109.47248 * 60.00549 * 9 7 5 13 13 N 1.46496 * 109.46929 * 65.55708 * 3 2 1 14 14 C 1.34776 * 120.00138 * 274.99545 * 13 3 2 15 15 O 1.21835 * 119.99581 * 0.02562 * 14 13 3 16 16 N 1.33834 * 120.00101 * 180.02562 * 14 13 3 17 17 C 1.32931 * 119.99832 * 179.97438 * 16 14 13 18 18 C 1.41211 * 126.38008 * 0.03322 * 17 16 14 19 19 C 1.34954 * 108.24351 * 179.97438 * 18 17 16 20 20 N 1.36461 * 108.94807 * 359.97438 * 19 18 17 21 21 C 1.46501 * 125.84817 * 179.97438 * 20 19 18 22 22 C 1.53001 * 109.47193 * 85.02922 * 21 20 19 23 23 N 1.37421 * 126.37958 * 179.71042 * 17 16 14 24 24 H 0.97009 * 126.35975 * 0.02811 * 23 17 16 25 25 H 1.09001 * 109.46976 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46918 * 299.99508 * 1 2 3 27 27 H 1.09000 * 109.47343 * 59.99888 * 1 2 3 28 28 H 1.09004 * 109.46918 * 240.00492 * 2 1 3 29 29 H 1.08994 * 109.47444 * 120.00558 * 2 1 3 30 30 H 0.97005 * 120.00293 * 354.83512 * 8 7 5 31 31 H 0.97000 * 120.00182 * 95.00214 * 13 3 2 32 32 H 1.08001 * 125.87903 * 359.94374 * 18 17 16 33 33 H 1.08003 * 125.52948 * 180.02562 * 19 18 17 34 34 H 1.09004 * 109.47061 * 205.02653 * 21 20 19 35 35 H 1.08998 * 109.47293 * 325.02479 * 21 20 19 36 36 H 1.09004 * 109.46943 * 59.99563 * 22 21 20 37 37 H 1.08994 * 109.47140 * 179.97438 * 22 21 20 38 38 H 1.08996 * 109.47143 * 299.99652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5976 1.9843 -0.8361 5 6 3.5407 1.4448 -0.1375 6 1 4.1567 1.8042 0.6735 7 6 4.1273 0.9880 -1.2987 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7980 -2.8499 10 1 3.9635 0.2948 -3.9514 11 1 2.0023 -0.1663 -2.6011 12 1 2.5327 2.1148 -3.2305 13 7 1.6638 2.0934 1.2574 14 6 0.4476 2.6599 1.3855 15 8 -0.3391 2.6303 0.4557 16 7 0.1042 3.2549 2.5341 17 6 -1.0951 3.8141 2.6602 18 6 -2.1064 3.8583 1.6757 19 6 -3.1693 4.5111 2.1907 20 7 -2.8804 4.8882 3.4700 21 6 -3.7737 5.6205 4.3711 22 6 -4.7017 4.6336 5.0822 23 7 -1.5841 4.4514 3.7752 24 1 -1.1180 4.5772 4.6166 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.9549 0.8551 -0.5317 31 1 2.2901 2.1167 1.9978 32 1 -2.0404 3.4418 0.6814 33 1 -4.0984 4.7032 1.6746 34 1 -3.1816 6.1597 5.1106 35 1 -4.3692 6.3292 3.7956 36 1 -4.1061 3.9249 5.6577 37 1 -5.3660 5.1783 5.7530 38 1 -5.2938 4.0944 4.3429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597028009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:03 Heat of formation + Delta-G solvation = 48.645335 kcal Electronic energy + Delta-G solvation = -20244.768878 eV Core-core repulsion = 17124.352937 eV Total energy + Delta-G solvation = -3120.415941 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.31144 -40.44407 -37.29990 -35.64381 -34.33086 -33.67871 -32.70954 -32.48198 -29.61614 -28.74472 -24.69628 -24.09644 -23.31673 -22.68101 -21.74756 -20.97444 -19.83552 -18.62365 -17.55402 -17.26344 -16.70539 -16.23929 -16.00505 -15.68915 -15.24822 -15.04981 -14.65041 -14.49760 -14.31960 -14.21891 -13.91954 -13.68708 -13.35919 -12.89290 -12.64625 -12.43299 -12.26299 -12.16389 -11.73020 -11.46950 -11.30220 -11.13332 -11.02431 -10.54578 -10.45828 -9.86159 -9.60758 -8.80021 -8.36140 -6.41958 0.27295 0.49689 1.46266 1.52804 1.68716 1.73895 2.43622 2.47480 3.01653 3.05025 3.24414 3.82460 3.94577 4.10883 4.29910 4.37139 4.42875 4.45441 4.56521 4.59557 4.75802 4.88481 4.93243 4.98465 5.10910 5.27381 5.28863 5.32761 5.42033 5.60203 5.71821 5.85214 5.94461 6.08566 6.10860 6.45576 6.57914 6.91925 7.24939 7.33846 8.25386 8.59918 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.042721 B = 0.004100 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.252267 B = 6828.257156 C = 7020.834826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 C 0.269 3.731 4 H 0.019 0.981 5 C -0.614 4.614 6 H 0.031 0.969 7 C -0.008 4.008 8 N -0.928 5.928 9 Si 1.078 2.922 10 H -0.277 1.277 11 H -0.242 1.242 12 H -0.275 1.275 13 N -0.706 5.706 14 C 0.671 3.329 15 O -0.647 6.647 16 N -0.721 5.721 17 C 0.468 3.532 18 C -0.350 4.350 19 C 0.188 3.812 20 N -0.373 5.373 21 C 0.123 3.877 22 C -0.176 4.176 23 N -0.477 5.477 24 H 0.454 0.546 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.255 0.745 31 H 0.391 0.609 32 H 0.158 0.842 33 H 0.245 0.755 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.044 0.956 37 H 0.101 0.899 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.790 11.837 13.884 32.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.173 4.173 3 C 0.163 3.837 4 H 0.037 0.963 5 C -0.652 4.652 6 H 0.049 0.951 7 C -0.207 4.207 8 N -0.564 5.564 9 Si 0.899 3.101 10 H -0.203 1.203 11 H -0.167 1.167 12 H -0.201 1.201 13 N -0.355 5.355 14 C 0.370 3.630 15 O -0.531 6.531 16 N -0.483 5.483 17 C 0.211 3.789 18 C -0.383 4.383 19 C 0.049 3.951 20 N -0.164 5.164 21 C 0.005 3.995 22 C -0.234 4.234 23 N -0.204 5.204 24 H 0.304 0.696 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.223 0.777 32 H 0.175 0.825 33 H 0.261 0.739 34 H 0.126 0.874 35 H 0.159 0.841 36 H 0.063 0.937 37 H 0.120 0.880 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.727 11.397 12.516 31.637 hybrid contribution 1.150 0.424 2.026 2.368 sum -25.577 11.822 14.541 31.707 Atomic orbital electron populations 1.21670 0.95398 0.99807 1.01263 1.22241 0.95590 0.98442 1.01000 1.18586 0.92944 0.89354 0.82788 0.96348 1.22347 0.91749 1.47981 1.03137 0.95116 1.26976 0.97808 0.91877 1.04056 1.70978 1.07949 1.43637 1.33811 0.83660 0.75075 0.78693 0.72658 1.20285 1.16651 1.20094 1.45012 1.14746 1.58848 1.16934 1.16869 0.82594 0.79073 0.84416 1.90657 1.51413 1.66196 1.44820 1.68102 1.18707 1.33061 1.28409 1.19011 0.89703 0.84794 0.85350 1.22392 0.95676 1.16320 1.03876 1.23381 0.99866 0.89828 0.82058 1.47343 1.03090 1.52508 1.13432 1.22434 0.90150 0.93593 0.93286 1.22322 0.99743 0.99899 1.01481 1.44223 1.06668 1.54869 1.14668 0.69617 0.92651 0.94174 0.93802 0.91991 0.93615 0.93576 0.77683 0.82512 0.73892 0.87386 0.84069 0.93702 0.88035 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 8.52 71.98 0.61 -4.99 16 2 C -0.13 -6.75 5.28 30.60 0.16 -6.58 16 3 C 0.27 14.93 1.82 44.25 0.08 15.02 16 4 H 0.02 1.11 6.25 -2.38 -0.01 1.09 16 5 C -0.61 -37.89 9.01 25.60 0.23 -37.66 16 6 H 0.03 2.02 7.96 -2.91 -0.02 2.00 16 7 C -0.01 -0.46 5.32 84.66 0.45 -0.01 16 8 N -0.93 -60.13 13.69 21.45 0.29 -59.84 16 9 Si 1.08 54.36 26.27 68.60 1.80 56.17 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.24 -11.13 5.67 99.48 0.56 -10.57 16 12 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 13 N -0.71 -36.81 5.03 -461.93 -2.32 -39.14 16 14 C 0.67 33.42 7.06 179.35 1.27 34.68 16 15 O -0.65 -33.30 10.39 -4.78 -0.05 -33.35 16 16 N -0.72 -30.80 10.59 -322.55 -3.42 -34.22 16 17 C 0.47 15.40 8.07 133.95 1.08 16.48 16 18 C -0.35 -10.18 9.52 22.24 0.21 -9.97 16 19 C 0.19 2.64 11.45 83.22 0.95 3.60 16 20 N -0.37 -4.23 3.65 -347.09 -1.27 -5.50 16 21 C 0.12 0.08 7.16 86.38 0.62 0.70 16 22 C -0.18 -0.22 10.24 71.98 0.74 0.52 16 23 N -0.48 -9.48 7.38 -54.78 -0.40 -9.88 16 24 H 0.45 6.90 8.96 -213.28 -1.91 4.99 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.11 16 26 H 0.04 1.89 5.63 -2.38 -0.01 1.88 16 27 H 0.04 2.01 7.87 -2.39 -0.02 1.99 16 28 H 0.06 3.13 4.74 -2.38 -0.01 3.11 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.26 16.64 8.73 -92.70 -0.81 15.83 16 31 H 0.39 19.84 8.63 -92.71 -0.80 19.04 16 32 H 0.16 5.80 5.77 -2.91 -0.02 5.78 16 33 H 0.25 0.59 8.06 -2.91 -0.02 0.56 16 34 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 35 H 0.14 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H 0.04 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.10 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -89.68 309.94 -0.76 -90.44 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: -1.80 Total: 23.53 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 6.40 Total: 11.77 kcal Atomic # 7 Polarization: -141.45 SS G_CDS: -7.12 Total: -148.57 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.05 Total: -33.35 kcal Atomic # 14 Polarization: 54.36 SS G_CDS: 1.80 Total: 56.17 kcal Total: -89.68 -0.76 -90.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597028009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.088 kcal (2) G-P(sol) polarization free energy of solvation -89.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds