Wall clock time and date at job start Mon Mar 30 2020 00:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46815 * 2 1 4 4 C 1.53001 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99864 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99649 * 359.72839 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.72721 * 6 5 4 9 9 N 1.46497 * 109.47115 * 180.02562 * 8 6 5 10 10 C 1.35311 * 125.87179 * 124.71453 * 9 8 6 11 11 C 1.35355 * 106.17811 * 179.90572 * 10 9 8 12 12 C 1.50696 * 126.74970 * 180.12759 * 11 10 9 13 13 C 1.50697 * 109.47363 * 125.24829 * 12 11 10 14 14 H 1.08005 * 119.99674 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99831 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47417 * 120.00164 * 17 15 13 20 20 H 1.48503 * 109.47217 * 239.99827 * 17 15 13 21 21 N 1.33772 * 106.49353 * 0.34991 * 11 10 9 22 22 N 1.28636 * 108.88913 * 359.77738 * 21 11 10 23 23 H 1.08993 * 109.47254 * 299.99813 * 1 2 3 24 24 H 1.09001 * 109.47075 * 60.00250 * 1 2 3 25 25 H 1.09003 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47254 * 240.00186 * 2 1 3 27 27 H 1.09001 * 109.47075 * 119.99750 * 2 1 3 28 28 H 1.09007 * 109.47291 * 60.00109 * 3 2 1 29 29 H 1.08993 * 109.47243 * 300.00018 * 3 2 1 30 30 H 1.09007 * 109.46593 * 60.00081 * 4 3 2 31 31 H 1.09006 * 109.47216 * 300.00539 * 4 3 2 32 32 H 0.97000 * 120.00740 * 359.72857 * 5 4 3 33 33 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 34 34 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 35 35 H 1.08001 * 126.91211 * 0.02562 * 10 9 8 36 36 H 1.09005 * 109.46647 * 245.24207 * 12 11 10 37 37 H 1.09004 * 109.47804 * 5.24222 * 12 11 10 38 38 H 0.97005 * 119.99558 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0702 -0.0001 7 8 6.1714 2.1483 0.0053 8 6 5.8856 4.4910 -0.0069 9 7 7.3505 4.4910 -0.0063 10 6 8.1438 5.1110 -0.9103 11 6 9.4180 4.8549 -0.5323 12 6 10.6741 5.3289 -1.2168 13 6 11.5431 6.0570 -0.2240 14 1 11.2181 6.1660 0.8002 15 6 12.7531 6.5840 -0.6231 16 7 13.1491 6.4508 -1.8701 17 14 13.8299 7.4871 0.6075 18 1 13.1622 7.4999 1.9338 19 1 15.1401 6.7971 0.7189 20 1 14.0432 8.8830 0.1477 21 7 9.3429 4.0943 0.5656 22 7 8.1044 3.8966 0.8513 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9336 0.9287 -0.8892 31 1 3.9330 0.9289 0.8909 32 1 3.4279 3.5611 -0.0047 33 1 5.5231 5.0002 -0.8999 34 1 5.5215 5.0093 0.8801 35 1 7.8245 5.6946 -1.7611 36 1 11.2169 4.4712 -1.6143 37 1 10.4115 6.0026 -2.0325 38 1 14.0005 6.8212 -2.1507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603175092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:53 Heat of formation + Delta-G solvation = 46.385650 kcal Electronic energy + Delta-G solvation = -19078.520072 eV Core-core repulsion = 15958.006144 eV Total energy + Delta-G solvation = -3120.513928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 5.01 seconds Orbital eigenvalues (eV) -42.48196 -39.85822 -36.62383 -34.37877 -34.11389 -33.06540 -30.98901 -29.97169 -28.15326 -27.13839 -23.98620 -23.35557 -21.83828 -21.66378 -20.81870 -19.93719 -17.56368 -17.13287 -16.44113 -16.18580 -15.73197 -15.59926 -15.03615 -14.47055 -14.14179 -14.02819 -13.89837 -13.75021 -12.91205 -12.84316 -12.46419 -12.09282 -11.93883 -11.66378 -11.63394 -11.61576 -11.13623 -10.95337 -10.68352 -10.59256 -10.29767 -10.02689 -9.64057 -9.44332 -9.35411 -9.20280 -8.38770 -8.06131 -5.94658 -3.94778 2.13004 2.31571 2.55606 3.04471 3.38494 3.45308 3.51210 3.60528 4.25576 4.31633 4.41995 4.49214 4.55590 4.59573 4.76223 4.88926 5.03506 5.14906 5.21201 5.28706 5.38244 5.42206 5.52649 5.60824 5.74028 5.81117 5.88545 6.03925 6.14064 6.33825 6.99650 7.18907 7.22940 7.58576 7.68546 7.90184 8.03563 8.42557 9.09039 9.39224 9.67750 11.16566 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.074278 B = 0.002704 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.871488 B =10350.806783 C =10403.928749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.119 3.881 5 N -0.732 5.732 6 C 0.499 3.501 7 O -0.500 6.500 8 C 0.105 3.895 9 N -0.300 5.300 10 C -0.086 4.086 11 C 0.038 3.962 12 C 0.091 3.909 13 C -0.501 4.501 14 H 0.060 0.940 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.285 1.285 21 N -0.260 5.260 22 N -0.081 5.081 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.401 0.599 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.182 0.818 36 H 0.040 0.960 37 H 0.037 0.963 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.994 -6.055 0.700 28.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.005 4.005 5 N -0.387 5.387 6 C 0.282 3.718 7 O -0.372 6.372 8 C -0.021 4.021 9 N -0.096 5.096 10 C -0.233 4.233 11 C -0.099 4.099 12 C 0.053 3.947 13 C -0.540 4.540 14 H 0.078 0.922 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.212 1.212 21 N -0.128 5.128 22 N -0.060 5.060 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.235 0.765 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.199 0.801 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -27.217 -7.579 1.854 28.313 hybrid contribution 0.008 1.591 -0.438 1.650 sum -27.209 -5.987 1.416 27.896 Atomic orbital electron populations 1.21764 0.95441 1.01894 1.01871 1.21442 0.96136 0.95824 1.02724 1.21832 0.93939 0.98266 1.02840 1.21402 0.93709 0.82529 1.02814 1.45868 1.06530 1.09251 1.77047 1.20510 0.82699 0.91234 0.77349 1.90864 1.54828 1.45352 1.46126 1.21581 0.77411 0.96209 1.06932 1.46574 1.06341 1.36145 1.20505 1.23312 0.91304 1.08297 1.00422 1.23007 0.96246 0.96718 0.93889 1.17741 0.85966 0.96343 0.94684 1.21096 1.02739 1.33975 0.96147 0.92194 1.24983 0.97708 0.96519 0.95336 1.69961 1.21645 1.46311 1.15935 0.86452 0.80402 0.79126 0.81564 1.19704 1.20969 1.21158 1.75102 1.07755 1.15477 1.14468 1.78303 0.96976 1.15909 1.14833 0.92658 0.92675 0.92534 0.91561 0.91529 0.91162 0.91195 0.91362 0.91214 0.76494 0.85280 0.86053 0.80051 0.94230 0.94522 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.12 -0.60 5.93 -26.73 -0.16 -0.75 16 3 C -0.13 -0.61 5.33 -26.73 -0.14 -0.75 16 4 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 5 N -0.73 -5.47 5.56 -60.29 -0.33 -5.81 16 6 C 0.50 6.01 7.84 -10.98 -0.09 5.93 16 7 O -0.50 -9.05 15.67 5.56 0.09 -8.96 16 8 C 0.11 1.10 6.94 -5.20 -0.04 1.06 16 9 N -0.30 -5.29 3.20 -62.45 -0.20 -5.49 16 10 C -0.09 -1.63 11.49 -17.05 -0.20 -1.82 16 11 C 0.04 0.91 6.44 -82.78 -0.53 0.37 16 12 C 0.09 2.46 5.55 -29.04 -0.16 2.30 16 13 C -0.50 -14.78 9.09 -34.44 -0.31 -15.09 16 14 H 0.06 1.81 7.74 -52.48 -0.41 1.40 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16 18 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 N -0.26 -6.65 12.40 33.29 0.41 -6.23 16 22 N -0.08 -1.82 12.13 60.35 0.73 -1.09 16 23 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.40 1.45 8.47 -40.82 -0.35 1.11 16 33 H 0.13 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.18 2.61 8.06 -52.49 -0.42 2.18 16 36 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.04 0.97 8.12 -51.93 -0.42 0.54 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -38.80 331.09 -5.78 -44.57 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -5.80 Total: -6.45 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.38 Total: -6.63 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 1.35 Total: -44.98 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -38.80 -5.78 -44.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.958 kcal (2) G-P(sol) polarization free energy of solvation -38.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.01 seconds