Wall clock time and date at job start Mon Mar 30 2020 00:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46815 * 2 1 4 4 C 1.53001 * 109.47182 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47084 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99864 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99649 * 359.72839 * 6 5 4 8 8 C 1.50694 * 119.99988 * 179.72721 * 6 5 4 9 9 N 1.46497 * 109.47115 * 180.02562 * 8 6 5 10 10 C 1.35311 * 125.87179 * 124.71453 * 9 8 6 11 11 C 1.35355 * 106.17811 * 179.90572 * 10 9 8 12 12 C 1.50696 * 126.74970 * 180.12759 * 11 10 9 13 13 C 1.50697 * 109.47363 * 125.24829 * 12 11 10 14 14 H 1.08005 * 119.99674 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00221 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99831 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99893 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47417 * 120.00164 * 17 15 13 20 20 H 1.48503 * 109.47217 * 239.99827 * 17 15 13 21 21 N 1.33772 * 106.49353 * 0.34991 * 11 10 9 22 22 N 1.28636 * 108.88913 * 359.77738 * 21 11 10 23 23 H 1.08993 * 109.47254 * 299.99813 * 1 2 3 24 24 H 1.09001 * 109.47075 * 60.00250 * 1 2 3 25 25 H 1.09003 * 109.46771 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47254 * 240.00186 * 2 1 3 27 27 H 1.09001 * 109.47075 * 119.99750 * 2 1 3 28 28 H 1.09007 * 109.47291 * 60.00109 * 3 2 1 29 29 H 1.08993 * 109.47243 * 300.00018 * 3 2 1 30 30 H 1.09007 * 109.46593 * 60.00081 * 4 3 2 31 31 H 1.09006 * 109.47216 * 300.00539 * 4 3 2 32 32 H 0.97000 * 120.00740 * 359.72857 * 5 4 3 33 33 H 1.08998 * 109.47224 * 299.99701 * 8 6 5 34 34 H 1.09002 * 109.47054 * 60.00213 * 8 6 5 35 35 H 1.08001 * 126.91211 * 0.02562 * 10 9 8 36 36 H 1.09005 * 109.46647 * 245.24207 * 12 11 10 37 37 H 1.09004 * 109.47804 * 5.24222 * 12 11 10 38 38 H 0.97005 * 119.99558 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0702 -0.0001 7 8 6.1714 2.1483 0.0053 8 6 5.8856 4.4910 -0.0069 9 7 7.3505 4.4910 -0.0063 10 6 8.1438 5.1110 -0.9103 11 6 9.4180 4.8549 -0.5323 12 6 10.6741 5.3289 -1.2168 13 6 11.5431 6.0570 -0.2240 14 1 11.2181 6.1660 0.8002 15 6 12.7531 6.5840 -0.6231 16 7 13.1491 6.4508 -1.8701 17 14 13.8299 7.4871 0.6075 18 1 13.1622 7.4999 1.9338 19 1 15.1401 6.7971 0.7189 20 1 14.0432 8.8830 0.1477 21 7 9.3429 4.0943 0.5656 22 7 8.1044 3.8966 0.8513 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9336 0.9287 -0.8892 31 1 3.9330 0.9289 0.8909 32 1 3.4279 3.5611 -0.0047 33 1 5.5231 5.0002 -0.8999 34 1 5.5215 5.0093 0.8801 35 1 7.8245 5.6946 -1.7611 36 1 11.2169 4.4712 -1.6143 37 1 10.4115 6.0026 -2.0325 38 1 14.0005 6.8212 -2.1507 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603175092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:50 Heat of formation + Delta-G solvation = 16.647919 kcal Electronic energy + Delta-G solvation = -19079.809597 eV Core-core repulsion = 15958.006144 eV Total energy + Delta-G solvation = -3121.803453 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.04723 -40.81546 -37.26622 -35.97865 -35.02803 -34.72920 -32.86306 -30.81860 -29.49548 -28.60828 -25.45838 -24.63964 -22.94817 -22.39547 -22.19555 -21.13121 -18.59929 -18.54531 -18.15380 -17.12284 -16.79747 -16.56780 -16.47049 -16.00613 -15.55299 -14.84673 -14.64928 -14.49884 -14.40112 -14.23422 -13.69738 -13.45612 -13.28401 -12.84473 -12.64339 -12.49728 -12.44219 -12.14322 -12.00626 -11.87540 -11.65483 -11.53760 -11.51434 -11.26419 -10.71657 -10.56602 -10.21881 -9.83241 -8.17759 -6.26262 0.72990 1.39424 1.40529 1.42246 1.43250 1.55718 1.80904 2.13027 2.45602 3.14751 3.44844 3.71634 3.85542 3.86606 4.00656 4.06969 4.17460 4.31004 4.42174 4.49691 4.63200 4.66057 4.77503 4.91505 4.93635 5.04613 5.25270 5.30360 5.34024 5.35357 5.45858 5.46444 5.55171 5.76874 5.78158 6.24105 6.42454 6.82116 7.12340 7.40172 7.74356 8.93467 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.074278 B = 0.002704 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.871488 B =10350.806783 C =10403.928749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.118 4.118 4 C 0.117 3.883 5 N -0.705 5.705 6 C 0.497 3.503 7 O -0.572 6.572 8 C 0.093 3.907 9 N -0.282 5.282 10 C -0.049 4.049 11 C -0.011 4.011 12 C 0.102 3.898 13 C -0.521 4.521 14 H 0.044 0.956 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.965 3.035 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.269 1.269 21 N -0.314 5.314 22 N -0.104 5.104 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.424 0.576 33 H 0.188 0.812 34 H 0.161 0.839 35 H 0.235 0.765 36 H 0.003 0.997 37 H 0.038 0.962 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.810 -4.129 0.572 31.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.006 4.006 5 N -0.360 5.360 6 C 0.281 3.719 7 O -0.450 6.450 8 C -0.030 4.030 9 N -0.078 5.078 10 C -0.198 4.198 11 C -0.149 4.149 12 C 0.063 3.937 13 C -0.560 4.560 14 H 0.063 0.937 15 C -0.192 4.192 16 N -0.568 5.568 17 Si 0.789 3.211 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.194 1.194 21 N -0.181 5.181 22 N -0.083 5.083 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.263 0.737 33 H 0.205 0.795 34 H 0.178 0.822 35 H 0.251 0.749 36 H 0.022 0.978 37 H 0.057 0.943 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -30.134 -5.639 1.744 30.707 hybrid contribution 0.682 0.945 -0.436 1.244 sum -29.452 -4.693 1.308 29.853 Atomic orbital electron populations 1.21747 0.94621 1.02055 1.02356 1.21464 0.96805 0.95991 1.02201 1.21756 0.91241 0.98357 1.04209 1.21426 0.95775 0.82229 1.01216 1.45673 1.05521 1.10173 1.74625 1.20853 0.83450 0.91220 0.76342 1.90860 1.56794 1.47404 1.49894 1.22370 0.73001 0.95942 1.11723 1.47001 1.08896 1.33434 1.18468 1.23818 0.89486 1.06100 1.00374 1.22724 0.97401 0.99536 0.95240 1.17398 0.87156 0.94677 0.94424 1.21306 1.03929 1.34803 0.95957 0.93739 1.25824 0.98901 0.97195 0.97288 1.70053 1.22286 1.46925 1.17514 0.85408 0.78286 0.78479 0.78890 1.19867 1.20403 1.19373 1.74995 1.09923 1.17220 1.16000 1.78159 0.96483 1.17204 1.16432 0.92197 0.92104 0.92641 0.92099 0.92230 0.89843 0.89615 0.92902 0.93142 0.73695 0.79502 0.82167 0.74902 0.97844 0.94338 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.27 16 2 C -0.13 -1.06 5.93 30.60 0.18 -0.88 16 3 C -0.12 -0.80 5.33 30.60 0.16 -0.64 16 4 C 0.12 1.63 5.67 86.38 0.49 2.12 16 5 N -0.71 -8.49 5.56 -463.05 -2.57 -11.06 16 6 C 0.50 10.86 7.84 87.65 0.69 11.55 16 7 O -0.57 -20.80 15.67 -3.04 -0.05 -20.85 16 8 C 0.09 1.52 6.94 85.63 0.59 2.11 16 9 N -0.28 -9.32 3.20 -351.48 -1.12 -10.44 16 10 C -0.05 -1.72 11.49 83.49 0.96 -0.76 16 11 C -0.01 -0.56 6.44 41.60 0.27 -0.29 16 12 C 0.10 5.71 5.55 29.10 0.16 5.87 16 13 C -0.52 -31.64 9.09 25.60 0.23 -31.41 16 14 H 0.04 2.77 7.74 -2.91 -0.02 2.75 16 15 C 0.01 0.35 5.46 84.66 0.46 0.81 16 16 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 17 Si 0.96 46.50 29.54 68.60 2.03 48.52 16 18 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 N -0.31 -16.59 12.40 -48.60 -0.60 -17.20 16 22 N -0.10 -4.67 12.13 37.02 0.45 -4.22 16 23 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 24 H 0.06 0.33 8.14 -2.39 -0.02 0.32 16 25 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.42 1.12 8.47 -92.71 -0.79 0.33 16 33 H 0.19 0.93 8.07 -2.39 -0.02 0.91 16 34 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.23 5.54 8.06 -2.91 -0.02 5.52 16 36 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 37 H 0.04 2.07 8.12 -2.38 -0.02 2.05 16 38 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -91.02 331.09 3.59 -87.42 By element: Atomic # 1 Polarization: -4.34 SS G_CDS: 0.27 Total: -4.07 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 4.91 Total: -11.78 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -3.57 Total: -99.25 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -91.02 3.59 -87.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603175092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.070 kcal (2) G-P(sol) polarization free energy of solvation -91.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds