Wall clock time and date at job start Mon Mar 30 2020 01:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.82193 * 2 1 4 4 C 1.54382 * 109.82719 * 239.11667 * 2 1 3 5 5 C 1.55307 * 102.25087 * 219.03541 * 4 2 1 6 6 C 1.54947 * 100.94091 * 34.13633 * 5 4 2 7 7 H 1.09006 * 110.31146 * 82.47076 * 6 5 4 8 8 C 1.53002 * 110.31059 * 204.63808 * 6 5 4 9 9 N 1.46498 * 109.46999 * 185.00284 * 8 6 5 10 10 C 1.35309 * 125.87238 * 124.71787 * 9 8 6 11 11 C 1.35349 * 106.17973 * 179.89796 * 10 9 8 12 12 C 1.50695 * 126.75363 * 180.11914 * 11 10 9 13 13 N 1.46502 * 109.46766 * 95.25012 * 12 11 10 14 14 C 1.36936 * 119.99803 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00636 * 0.02562 * 14 13 12 16 16 C 1.38819 * 120.00142 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99827 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00257 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46929 * 60.00231 * 18 16 14 20 20 H 1.48509 * 109.47049 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47400 * 299.99871 * 18 16 14 22 22 N 1.33766 * 106.49180 * 0.35483 * 11 10 9 23 23 N 1.28634 * 108.88833 * 359.76948 * 22 11 10 24 24 O 1.43237 * 109.90458 * 120.93860 * 2 1 3 25 25 H 1.09003 * 109.47108 * 180.88163 * 1 2 3 26 26 H 1.09000 * 109.47426 * 300.88192 * 1 2 3 27 27 H 1.08996 * 109.47375 * 60.88410 * 1 2 3 28 28 H 1.09000 * 110.84821 * 100.84857 * 4 2 1 29 29 H 1.08992 * 111.02755 * 337.30732 * 4 2 1 30 30 H 1.09003 * 111.12638 * 152.05316 * 5 4 2 31 31 H 1.08996 * 111.12876 * 276.21860 * 5 4 2 32 32 H 1.09006 * 109.46926 * 304.99930 * 8 6 5 33 33 H 1.08995 * 109.46825 * 64.99662 * 8 6 5 34 34 H 1.08005 * 126.91093 * 0.02562 * 10 9 8 35 35 H 1.08997 * 109.47271 * 215.25092 * 12 11 10 36 36 H 1.09003 * 109.47383 * 335.25745 * 12 11 10 37 37 H 0.96995 * 120.00378 * 359.97438 * 13 12 11 38 38 H 0.96994 * 120.00304 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0536 -0.7455 -1.2464 5 6 3.2744 -1.5197 -0.6787 6 6 2.7777 -1.8431 0.7530 7 1 2.1442 -2.7301 0.7423 8 6 3.9665 -2.0496 1.6936 9 7 3.4803 -2.4706 3.0099 10 6 3.8580 -3.5868 3.6749 11 6 3.1702 -3.5822 4.8406 12 6 3.2428 -4.6162 5.9345 13 7 4.2003 -4.1814 6.9545 14 6 4.4348 -4.9659 8.0521 15 1 3.9142 -5.9053 8.1657 16 6 5.3416 -4.5538 9.0190 17 7 5.9765 -3.4092 8.8804 18 14 5.6609 -5.6236 10.5166 19 1 6.1784 -6.9452 10.0796 20 1 6.6641 -4.9643 11.3911 21 1 4.3949 -5.8119 11.2694 22 7 2.4095 -2.4820 4.8284 23 7 2.6164 -1.8449 3.7302 24 8 2.0177 -0.6924 1.1552 25 1 -0.3633 -1.0276 0.0158 26 1 -0.3634 0.5275 0.8820 27 1 -0.3634 0.5000 -0.8978 28 1 2.3656 -0.0408 -2.0173 29 1 1.3034 -1.4345 -1.6339 30 1 3.4594 -2.4320 -1.2457 31 1 4.1626 -0.8884 -0.6530 32 1 4.6231 -2.8184 1.2860 33 1 4.5186 -1.1150 1.7919 34 1 4.5674 -4.3307 3.3433 35 1 2.2586 -4.7357 6.3874 36 1 3.5673 -5.5680 5.5139 37 1 4.6687 -3.3383 6.8521 38 1 6.6099 -3.1210 9.5561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603261805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:38 Heat of formation + Delta-G solvation = 64.139083 kcal Electronic energy + Delta-G solvation = -19761.671176 eV Core-core repulsion = 16641.927094 eV Total energy + Delta-G solvation = -3119.744082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.78876 -39.95217 -35.31998 -34.33170 -32.62137 -31.98119 -31.61064 -29.77673 -28.45582 -25.69325 -24.86777 -22.75816 -22.03576 -21.72890 -21.02771 -20.26465 -17.49916 -17.15566 -16.75502 -16.64760 -15.52600 -14.67310 -14.56127 -14.47043 -13.94088 -13.80574 -13.68607 -13.30834 -13.08223 -12.55806 -12.48550 -12.28946 -12.15111 -11.88419 -11.58072 -11.32655 -11.13085 -11.05372 -10.80539 -10.73702 -10.29907 -10.07343 -9.89863 -9.72576 -9.55378 -8.81455 -8.68360 -6.84960 -5.67816 -2.97165 2.00159 2.54339 3.07652 3.38556 3.50230 3.54231 3.55806 3.97847 4.18932 4.35268 4.42994 4.66763 4.68419 4.76667 4.90465 4.94496 5.00269 5.08954 5.22813 5.28831 5.37387 5.42096 5.46720 5.58237 5.60908 5.73296 5.79653 5.94656 5.99489 6.25962 6.52737 6.77109 6.78965 6.86801 6.95194 7.76069 8.49652 9.04326 9.61065 10.18016 10.54174 11.55027 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.052631 B = 0.003216 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.875985 B = 8703.213067 C = 8845.181887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.072 3.928 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.149 4.149 6 C 0.071 3.929 7 H 0.077 0.923 8 C 0.120 3.880 9 N -0.300 5.300 10 C -0.054 4.054 11 C -0.007 4.007 12 C 0.233 3.767 13 N -0.726 5.726 14 C -0.239 4.239 15 H 0.072 0.928 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.910 3.090 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.285 1.285 22 N -0.262 5.262 23 N -0.069 5.069 24 O -0.349 6.349 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.187 0.813 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.386 0.614 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 3.856 -25.786 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 H 0.098 0.902 4 C -0.188 4.188 5 C -0.188 4.188 6 C 0.012 3.988 7 H 0.095 0.905 8 C -0.002 4.002 9 N -0.094 5.094 10 C -0.204 4.204 11 C -0.144 4.144 12 C 0.104 3.896 13 N -0.371 5.371 14 C -0.370 4.370 15 H 0.090 0.910 16 C -0.210 4.210 17 N -0.581 5.581 18 Si 0.741 3.259 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.212 1.212 22 N -0.130 5.130 23 N -0.048 5.048 24 O -0.268 6.268 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.204 0.796 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.219 0.781 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.292 5.030 -25.362 26.611 hybrid contribution 1.251 -1.193 0.346 1.763 sum -5.041 3.837 -25.016 25.806 Atomic orbital electron populations 1.22127 0.94833 1.02640 1.02356 1.22758 0.94617 0.96444 0.84733 0.90180 1.23190 0.97533 0.99785 0.98257 1.23273 0.99114 1.01674 0.94700 1.23189 0.91967 0.91242 0.92423 0.90508 1.22214 0.96297 1.03341 0.78378 1.47202 1.29655 1.16569 1.15961 1.23394 1.06659 0.94293 0.96036 1.22441 0.97554 0.97712 0.96729 1.18925 0.94655 0.90357 0.85635 1.42309 1.48120 1.24875 1.21759 1.19200 1.19107 1.01015 0.97695 0.90961 1.24761 0.99757 0.97429 0.99055 1.69676 1.30920 1.21507 1.36032 0.86230 0.77532 0.79390 0.82794 1.21285 1.21761 1.21202 1.75136 1.20948 1.05506 1.11376 1.78441 1.07338 1.19816 0.99218 1.88720 1.70007 1.39144 1.28953 0.92293 0.91574 0.91715 0.89833 0.90278 0.89378 0.89666 0.86606 0.87850 0.79639 0.94428 0.94620 0.78093 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.45 37.16 0.35 -0.98 16 2 C 0.07 0.62 4.15 -26.01 -0.11 0.51 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.15 -0.86 6.54 -24.78 -0.16 -1.02 16 5 C -0.15 -0.82 6.57 -24.48 -0.16 -0.98 16 6 C 0.07 0.65 3.59 -25.70 -0.09 0.55 16 7 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 8 C 0.12 1.16 6.19 -4.04 -0.03 1.13 16 9 N -0.30 -4.58 3.44 -61.26 -0.21 -4.79 16 10 C -0.05 -0.87 11.50 -17.05 -0.20 -1.06 16 11 C -0.01 -0.14 6.61 -82.78 -0.55 -0.69 16 12 C 0.23 5.15 6.82 -5.19 -0.04 5.12 16 13 N -0.73 -19.72 5.59 -61.09 -0.34 -20.07 16 14 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 15 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -29.40 13.06 55.49 0.72 -28.67 16 18 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 N -0.26 -5.77 12.41 33.28 0.41 -5.36 16 23 N -0.07 -1.34 12.34 60.35 0.74 -0.60 16 24 O -0.35 -4.24 10.03 -35.23 -0.35 -4.59 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.42 7.86 -51.93 -0.41 0.02 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.12 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.19 2.26 8.06 -52.48 -0.42 1.84 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.39 11.30 7.66 -40.82 -0.31 10.98 16 38 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -36.47 321.91 -6.17 -42.64 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.75 Total: 3.67 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.22 Total: -5.02 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 1.33 Total: -59.48 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.35 Total: -4.59 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.47 -6.17 -42.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603261805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.784 kcal (2) G-P(sol) polarization free energy of solvation -36.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds