Wall clock time and date at job start Mon Mar 30 2020 01:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 O 1.21276 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99616 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99916 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47030 * 179.97438 * 8 7 5 10 10 N 1.46500 * 109.46865 * 179.97438 * 9 8 7 11 11 C 1.36942 * 120.00019 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99805 * 359.97438 * 11 10 9 13 13 C 1.38808 * 120.00412 * 180.02562 * 11 10 9 14 14 N 1.31623 * 119.99707 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00329 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47352 * 89.99448 * 15 13 11 17 17 H 1.48502 * 109.47448 * 209.99679 * 15 13 11 18 18 H 1.48501 * 109.47134 * 329.99404 * 15 13 11 19 19 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 20 20 C 1.36885 * 126.39286 * 120.00096 * 19 2 1 21 21 C 1.34665 * 106.81493 * 179.97438 * 20 19 2 22 22 N 1.34129 * 108.02445 * 0.02562 * 21 20 19 23 23 C 1.30498 * 109.25189 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 25 25 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 27 27 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 28 28 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 29 29 H 0.96999 * 120.00048 * 359.97438 * 7 5 4 30 30 H 1.09003 * 109.46527 * 299.99751 * 8 7 5 31 31 H 1.08996 * 109.46980 * 59.99074 * 8 7 5 32 32 H 1.08997 * 109.47473 * 299.99941 * 9 8 7 33 33 H 1.09001 * 109.47143 * 59.99974 * 9 8 7 34 34 H 0.96998 * 120.00606 * 0.02562 * 10 9 8 35 35 H 0.96996 * 119.99878 * 180.02562 * 14 13 11 36 36 H 1.07999 * 126.59054 * 359.73997 * 20 19 2 37 37 H 1.08008 * 125.98738 * 179.97438 * 21 20 19 38 38 H 1.08006 * 125.64605 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 1.5980 0.3655 4.8933 9 6 2.1078 -0.3558 6.1425 10 7 1.7212 0.4015 7.3355 11 6 2.0707 -0.0540 8.5787 12 1 2.6311 -0.9718 8.6797 13 6 1.7039 0.6631 9.7092 14 7 1.0206 1.7813 9.5862 15 14 2.1801 0.0414 11.4050 16 1 3.5030 0.6000 11.7837 17 1 1.1597 0.4713 12.3945 18 1 2.2563 -1.4416 11.3852 19 7 2.0184 -0.6907 -1.1961 20 6 2.8085 -0.1554 -2.1774 21 6 3.0192 -1.1298 -3.0827 22 7 2.3748 -2.2299 -2.6660 23 6 1.7733 -1.9743 -1.5365 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 2.4891 -1.2152 3.7908 30 1 2.0327 1.3641 4.8469 31 1 0.5118 0.4439 4.9372 32 1 1.6729 -1.3541 6.1886 33 1 3.1941 -0.4344 6.0987 34 1 1.2176 1.2255 7.2449 35 1 0.7646 2.2826 10.3761 36 1 3.1868 0.8553 -2.2195 37 1 3.6039 -1.0408 -3.9865 38 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134494496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:59 Heat of formation + Delta-G solvation = 33.548273 kcal Electronic energy + Delta-G solvation = -19209.211496 eV Core-core repulsion = 16088.140898 eV Total energy + Delta-G solvation = -3121.070599 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.34319 -39.95340 -36.33863 -35.49497 -33.97311 -31.57468 -31.08139 -29.52875 -28.86607 -27.18199 -24.05373 -23.27214 -21.64486 -21.55601 -20.93037 -20.06953 -17.86560 -17.41986 -16.60689 -16.08289 -15.82276 -15.32842 -14.87849 -14.60752 -14.43471 -14.12493 -13.87957 -13.63547 -13.43104 -13.25666 -13.12382 -12.90166 -12.25785 -11.89455 -11.65904 -11.47376 -11.19323 -10.89868 -10.86111 -10.20846 -10.18095 -10.05750 -9.89313 -9.77289 -9.10870 -8.94253 -8.75468 -7.06522 -5.85724 -3.16935 1.81996 2.37139 2.46272 2.96393 3.17484 3.38246 3.43457 3.45246 4.05985 4.33319 4.46865 4.48485 4.55075 4.66444 4.82216 5.00957 5.09282 5.19997 5.36478 5.40313 5.42998 5.47555 5.51852 5.66959 5.84753 5.88463 6.03530 6.07792 6.35069 6.50433 6.60123 6.61189 6.93767 7.39807 7.60027 7.85068 8.08198 8.31777 9.43161 9.96970 10.31466 11.36777 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.057299 B = 0.002622 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.545456 B =10676.671900 C =10916.330189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.149 3.851 3 H 0.110 0.890 4 C -0.153 4.153 5 C 0.516 3.484 6 O -0.539 6.539 7 N -0.719 5.719 8 C 0.110 3.890 9 C 0.144 3.856 10 N -0.730 5.730 11 C -0.246 4.246 12 H 0.072 0.928 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.911 3.089 16 H -0.289 1.289 17 H -0.290 1.290 18 H -0.281 1.281 19 N -0.453 5.453 20 C -0.054 4.054 21 C -0.034 4.034 22 N -0.498 5.498 23 C 0.181 3.819 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.100 0.900 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.401 0.599 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.024 0.976 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.303 -5.407 -21.832 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.046 3.954 3 H 0.128 0.872 4 C -0.194 4.194 5 C 0.301 3.699 6 O -0.416 6.416 7 N -0.370 5.370 8 C -0.013 4.013 9 C 0.016 3.984 10 N -0.375 5.375 11 C -0.377 4.377 12 H 0.090 0.910 13 C -0.208 4.208 14 N -0.578 5.578 15 Si 0.742 3.258 16 H -0.216 1.216 17 H -0.216 1.216 18 H -0.207 1.207 19 N -0.136 5.136 20 C -0.187 4.187 21 C -0.182 4.182 22 N -0.216 5.216 23 C -0.102 4.102 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.235 0.765 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.190 0.810 37 H 0.185 0.815 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.836 -5.431 -22.036 22.769 hybrid contribution 0.423 0.348 1.464 1.563 sum 2.259 -5.083 -20.572 21.311 Atomic orbital electron populations 1.22307 0.92228 1.03098 1.04870 1.21171 0.96359 0.96922 0.80997 0.87182 1.22011 1.03959 1.00963 0.92470 1.20134 0.79681 0.85693 0.84387 1.90712 1.39967 1.24427 1.86532 1.45931 1.57221 1.27854 1.05991 1.21624 1.00715 0.95701 0.83304 1.20754 0.97114 0.94640 0.85875 1.42185 1.67145 1.27774 1.00378 1.19183 1.29462 1.05727 0.83304 0.91017 1.24789 1.00640 0.97298 0.98067 1.69666 1.42965 1.16427 1.28780 0.86140 0.77657 0.78014 0.84038 1.21579 1.21642 1.20678 1.45808 1.37867 1.11434 1.18502 1.22797 1.02312 1.01341 0.92296 1.22302 1.04824 0.89649 1.01434 1.70307 1.12440 1.28269 1.10563 1.24888 1.03871 0.85476 0.95920 0.91845 0.92118 0.88147 0.87916 0.87999 0.76471 0.91134 0.91095 0.95771 0.95807 0.77997 0.93305 0.80994 0.81494 0.78257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 8.98 37.16 0.33 -1.05 16 2 C 0.15 1.19 2.70 -67.92 -0.18 1.00 16 3 H 0.11 0.94 7.89 -51.93 -0.41 0.53 16 4 C -0.15 -1.13 5.17 -27.88 -0.14 -1.28 16 5 C 0.52 5.81 7.55 -10.98 -0.08 5.73 16 6 O -0.54 -7.98 13.97 5.56 0.08 -7.90 16 7 N -0.72 -8.29 5.56 -60.29 -0.33 -8.62 16 8 C 0.11 1.72 5.79 -4.04 -0.02 1.70 16 9 C 0.14 2.67 6.37 -4.05 -0.03 2.64 16 10 N -0.73 -17.99 5.60 -59.91 -0.34 -18.33 16 11 C -0.25 -6.73 9.99 -15.06 -0.15 -6.88 16 12 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 13 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 14 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 15 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 N -0.45 -3.85 2.62 -111.45 -0.29 -4.14 16 20 C -0.05 -0.46 11.54 -16.56 -0.19 -0.65 16 21 C -0.03 -0.33 11.87 -17.81 -0.21 -0.55 16 22 N -0.50 -5.75 11.25 -14.66 -0.16 -5.92 16 23 C 0.18 1.67 11.65 -90.38 -1.05 0.61 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 26 H 0.10 1.04 5.95 -51.93 -0.31 0.73 16 27 H 0.10 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.40 3.52 8.47 -40.82 -0.35 3.18 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.39 10.09 7.67 -40.82 -0.31 9.77 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 LS Contribution 325.22 15.07 4.90 4.90 Total: -1.00 -33.67 325.22 -7.84 -41.51 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.56 Total: 7.80 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.83 Total: 0.86 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.40 Total: -64.09 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.08 Total: -7.90 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.67 -7.84 -41.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134494496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.055 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds