Wall clock time and date at job start Mon Mar 30 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47046 * 2 1 4 4 C 1.53008 * 109.46912 * 119.99941 * 2 1 3 5 5 C 1.50700 * 109.46781 * 295.00279 * 4 2 1 6 6 O 1.21276 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99616 * 180.02562 * 5 4 2 8 8 C 1.46505 * 119.99916 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47030 * 179.97438 * 8 7 5 10 10 N 1.46500 * 109.46865 * 179.97438 * 9 8 7 11 11 C 1.36942 * 120.00019 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99805 * 359.97438 * 11 10 9 13 13 C 1.38808 * 120.00412 * 180.02562 * 11 10 9 14 14 N 1.31623 * 119.99707 * 359.97438 * 13 11 10 15 15 Si 1.86791 * 120.00329 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47352 * 89.99448 * 15 13 11 17 17 H 1.48502 * 109.47448 * 209.99679 * 15 13 11 18 18 H 1.48501 * 109.47134 * 329.99404 * 15 13 11 19 19 N 1.46500 * 109.47085 * 239.99543 * 2 1 3 20 20 C 1.36885 * 126.39286 * 120.00096 * 19 2 1 21 21 C 1.34665 * 106.81493 * 179.97438 * 20 19 2 22 22 N 1.34129 * 108.02445 * 0.02562 * 21 20 19 23 23 C 1.30498 * 109.25189 * 359.97438 * 22 21 20 24 24 H 1.09000 * 109.46506 * 60.00585 * 1 2 3 25 25 H 1.08996 * 109.47046 * 180.02562 * 1 2 3 26 26 H 1.08991 * 109.47042 * 300.00099 * 1 2 3 27 27 H 1.08997 * 109.47047 * 54.99920 * 4 2 1 28 28 H 1.08993 * 109.46753 * 175.00151 * 4 2 1 29 29 H 0.96999 * 120.00048 * 359.97438 * 7 5 4 30 30 H 1.09003 * 109.46527 * 299.99751 * 8 7 5 31 31 H 1.08996 * 109.46980 * 59.99074 * 8 7 5 32 32 H 1.08997 * 109.47473 * 299.99941 * 9 8 7 33 33 H 1.09001 * 109.47143 * 59.99974 * 9 8 7 34 34 H 0.96998 * 120.00606 * 0.02562 * 10 9 8 35 35 H 0.96996 * 119.99878 * 180.02562 * 14 13 11 36 36 H 1.07999 * 126.59054 * 359.73997 * 20 19 2 37 37 H 1.08008 * 125.98738 * 179.97438 * 21 20 19 38 38 H 1.08006 * 125.64605 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 1.5980 0.3655 4.8933 9 6 2.1078 -0.3558 6.1425 10 7 1.7212 0.4015 7.3355 11 6 2.0707 -0.0540 8.5787 12 1 2.6311 -0.9718 8.6797 13 6 1.7039 0.6631 9.7092 14 7 1.0206 1.7813 9.5862 15 14 2.1801 0.0414 11.4050 16 1 3.5030 0.6000 11.7837 17 1 1.1597 0.4713 12.3945 18 1 2.2563 -1.4416 11.3852 19 7 2.0184 -0.6907 -1.1961 20 6 2.8085 -0.1554 -2.1774 21 6 3.0192 -1.1298 -3.0827 22 7 2.3748 -2.2299 -2.6660 23 6 1.7733 -1.9743 -1.5365 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 2.4891 -1.2152 3.7908 30 1 2.0327 1.3641 4.8469 31 1 0.5118 0.4439 4.9372 32 1 1.6729 -1.3541 6.1886 33 1 3.1941 -0.4344 6.0987 34 1 1.2176 1.2255 7.2449 35 1 0.7646 2.2826 10.3761 36 1 3.1868 0.8553 -2.2195 37 1 3.6039 -1.0408 -3.9865 38 1 1.1775 -2.6734 -0.9684 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134494496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:58 Heat of formation + Delta-G solvation = 10.417414 kcal Electronic energy + Delta-G solvation = -19210.214526 eV Core-core repulsion = 16088.140898 eV Total energy + Delta-G solvation = -3122.073628 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.00992 -40.90968 -37.52403 -36.53966 -35.48466 -33.22054 -31.98080 -30.31253 -29.88837 -28.38290 -25.61886 -24.29529 -23.07538 -22.28338 -21.77439 -20.85938 -19.32824 -18.59556 -17.53079 -17.06011 -16.87967 -16.48951 -16.10270 -15.82295 -15.46762 -15.15001 -14.96427 -14.79583 -14.55880 -14.39539 -14.08811 -13.83454 -13.22225 -13.05002 -12.84524 -12.63014 -12.53794 -12.47849 -12.24855 -12.08804 -11.87046 -11.01749 -10.99642 -10.89341 -10.58560 -10.13835 -9.41743 -9.07231 -7.98032 -5.29193 1.16986 1.48371 1.50314 1.56207 1.58685 1.66132 2.24832 2.27149 2.58078 3.36531 3.41245 3.66000 3.78354 3.90595 4.01394 4.05470 4.12692 4.22182 4.22558 4.45656 4.51153 4.59320 4.62276 4.74216 4.80488 4.89036 5.03337 5.13661 5.19706 5.37521 5.42931 5.48880 5.85782 6.23256 6.30135 6.50187 7.17929 7.19773 7.29550 8.01877 8.23865 9.25581 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.057299 B = 0.002622 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.545456 B =10676.671900 C =10916.330189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.103 0.897 4 C -0.139 4.139 5 C 0.517 3.483 6 O -0.576 6.576 7 N -0.710 5.710 8 C 0.128 3.872 9 C 0.147 3.853 10 N -0.748 5.748 11 C -0.248 4.248 12 H 0.083 0.917 13 C -0.077 4.077 14 N -0.971 5.971 15 Si 0.978 3.022 16 H -0.286 1.286 17 H -0.297 1.297 18 H -0.266 1.266 19 N -0.451 5.451 20 C -0.055 4.055 21 C -0.055 4.055 22 N -0.537 5.537 23 C 0.179 3.821 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.418 0.582 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.374 0.626 35 H 0.252 0.748 36 H 0.194 0.806 37 H 0.180 0.820 38 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -7.073 -22.353 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 H 0.122 0.878 4 C -0.180 4.180 5 C 0.304 3.696 6 O -0.456 6.456 7 N -0.363 5.363 8 C 0.003 3.997 9 C 0.020 3.980 10 N -0.391 5.391 11 C -0.379 4.379 12 H 0.101 0.899 13 C -0.269 4.269 14 N -0.621 5.621 15 Si 0.807 3.193 16 H -0.213 1.213 17 H -0.223 1.223 18 H -0.190 1.190 19 N -0.133 5.133 20 C -0.188 4.188 21 C -0.202 4.202 22 N -0.255 5.255 23 C -0.104 4.104 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.255 0.745 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.206 0.794 35 H 0.061 0.939 36 H 0.211 0.789 37 H 0.197 0.803 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.786 -7.158 -22.603 23.872 hybrid contribution 0.147 0.845 1.516 1.741 sum 2.934 -6.314 -21.087 22.207 Atomic orbital electron populations 1.22227 0.92514 1.03692 1.03631 1.21084 0.96049 0.96690 0.81126 0.87849 1.21954 1.05079 1.01252 0.89671 1.20772 0.78539 0.85290 0.85015 1.90714 1.41570 1.26299 1.87039 1.45737 1.57453 1.28165 1.04907 1.21134 0.99470 0.95107 0.83964 1.20866 0.97682 0.94572 0.84837 1.42435 1.67114 1.27941 1.01643 1.19640 1.28190 1.05608 0.84466 0.89939 1.25661 1.01479 0.97830 1.01975 1.69830 1.44935 1.17979 1.29344 0.85076 0.76881 0.78167 0.79222 1.21325 1.22344 1.19039 1.45807 1.37740 1.11315 1.18475 1.23181 1.01739 1.02070 0.91796 1.22645 1.05406 0.89749 1.02432 1.70285 1.13822 1.29476 1.11957 1.25397 1.03453 0.85963 0.95556 0.92152 0.90622 0.90250 0.85159 0.86288 0.74503 0.92823 0.92621 0.94448 0.94605 0.79438 0.93901 0.78861 0.80306 0.75747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.98 71.98 0.65 -1.80 16 2 C 0.15 2.12 2.70 45.00 0.12 2.24 16 3 H 0.10 1.61 7.89 -2.39 -0.02 1.59 16 4 C -0.14 -1.63 5.17 29.85 0.15 -1.47 16 5 C 0.52 10.68 7.55 87.66 0.66 11.34 16 6 O -0.58 -16.76 13.97 -3.02 -0.04 -16.80 16 7 N -0.71 -14.91 5.56 -463.06 -2.57 -17.48 16 8 C 0.13 3.93 5.79 86.38 0.50 4.43 16 9 C 0.15 5.24 6.37 86.38 0.55 5.79 16 10 N -0.75 -36.78 5.60 -343.46 -1.92 -38.70 16 11 C -0.25 -13.37 9.99 84.03 0.84 -12.53 16 12 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 13 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 14 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 15 Si 0.98 44.96 29.55 68.60 2.03 46.98 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 19 N -0.45 -6.61 2.62 -506.53 -1.33 -7.94 16 20 C -0.05 -0.83 11.54 83.08 0.96 0.13 16 21 C -0.06 -1.02 11.87 83.52 0.99 -0.02 16 22 N -0.54 -11.66 11.25 -200.31 -2.25 -13.91 16 23 C 0.18 2.87 11.65 180.26 2.10 4.97 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.89 7.95 -2.39 -0.02 0.87 16 26 H 0.08 1.59 5.95 -2.39 -0.01 1.58 16 27 H 0.13 0.88 8.08 -2.39 -0.02 0.86 16 28 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.42 6.03 8.47 -92.71 -0.79 5.25 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.37 19.93 7.67 -92.71 -0.71 19.21 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.23 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -72.94 325.22 1.76 -71.18 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.43 Total: 26.14 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 7.99 Total: 9.19 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -7.79 Total: -136.68 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.04 Total: -16.80 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -72.94 1.76 -71.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134494496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.597 kcal (2) G-P(sol) polarization free energy of solvation -72.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds