Wall clock time and date at job start Mon Mar 30 2020 00:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.47135 * 2 1 4 4 C 1.38391 * 119.85145 * 89.99955 * 3 2 1 5 5 C 1.37941 * 120.14307 * 179.97438 * 4 3 2 6 6 C 1.39597 * 119.85057 * 0.02562 * 5 4 3 7 7 C 1.47989 * 120.14083 * 179.97438 * 6 5 4 8 8 C 1.39959 * 119.88386 * 180.02562 * 7 6 5 9 9 C 1.36234 * 120.12265 * 179.97438 * 8 7 6 10 10 C 1.40947 * 119.87625 * 0.02562 * 9 8 7 11 11 C 1.41034 * 120.11672 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00263 * 153.73814 * 11 10 9 13 13 C 1.40013 * 119.99786 * 333.74061 * 11 10 9 14 14 N 1.30797 * 120.00282 * 343.38527 * 13 11 10 15 15 Si 1.86799 * 119.99826 * 163.38330 * 13 11 10 16 16 H 1.48500 * 109.47406 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47001 * 120.00045 * 15 13 11 18 18 H 1.48497 * 109.47132 * 239.99617 * 15 13 11 19 19 C 1.40907 * 119.76741 * 359.97438 * 10 9 8 20 20 C 1.50698 * 120.06433 * 180.02562 * 19 10 9 21 21 C 1.36272 * 119.87422 * 359.74785 * 19 10 9 22 22 C 1.39603 * 119.71738 * 359.95881 * 6 5 4 23 23 C 1.37936 * 119.85113 * 0.02562 * 22 6 5 24 24 H 1.09002 * 109.47049 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47091 * 299.99823 * 1 2 3 26 26 H 1.09000 * 109.46913 * 59.99951 * 1 2 3 27 27 H 1.09007 * 109.46908 * 240.00077 * 2 1 3 28 28 H 1.09001 * 109.47447 * 120.00596 * 2 1 3 29 29 H 1.07996 * 119.93022 * 359.73001 * 4 3 2 30 30 H 1.07998 * 120.07088 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.93672 * 0.02562 * 8 7 6 32 32 H 1.08004 * 120.05969 * 179.97438 * 9 8 7 33 33 H 0.96995 * 120.00418 * 180.02562 * 14 13 11 34 34 H 1.09004 * 109.47164 * 90.00162 * 20 19 10 35 35 H 1.09001 * 109.47688 * 210.00410 * 20 19 10 36 36 H 1.09007 * 109.46893 * 330.00439 * 20 19 10 37 37 H 1.08007 * 119.93414 * 180.24964 * 21 19 10 38 38 H 1.07996 * 120.07290 * 179.97438 * 22 6 5 39 39 H 1.07993 * 119.92571 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2619 2.0702 1.2003 5 6 2.7222 3.3706 1.2073 6 6 2.9559 4.0315 0.0001 7 6 3.4492 5.4267 0.0001 8 6 3.6812 6.0844 -1.2133 9 6 4.1348 7.3690 -1.2190 10 6 4.3710 8.0355 0.0002 11 6 4.8411 9.3652 0.0003 12 1 4.6313 10.0121 0.8392 13 6 5.5798 9.8466 -1.0873 14 7 6.1116 9.0084 -1.9390 15 14 5.8058 11.6859 -1.3220 16 1 5.1111 12.4134 -0.2297 17 1 7.2538 12.0145 -1.2923 18 1 5.2330 12.0920 -2.6305 19 6 4.1358 7.3687 1.2191 20 6 4.3856 8.0752 2.5266 21 6 3.6767 6.0857 1.2133 22 6 2.7226 3.3705 -1.2072 23 6 2.2626 2.0701 -1.2002 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.0766 1.5593 2.1335 30 1 2.9006 3.8764 2.1447 31 1 3.4994 5.5728 -2.1470 32 1 4.3138 7.8754 -2.1560 33 1 6.6237 9.3418 -2.6923 34 1 3.4767 8.5877 2.8420 35 1 4.6734 7.3463 3.2843 36 1 5.1873 8.8026 2.3991 37 1 3.4922 5.5750 2.1469 38 1 2.9010 3.8764 -2.1445 39 1 2.0821 1.5575 -2.1334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239589318.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:44 Heat of formation + Delta-G solvation = 4.398645 kcal Electronic energy + Delta-G solvation = -18755.061832 eV Core-core repulsion = 16011.283723 eV Total energy + Delta-G solvation = -2743.778109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53374 -39.26532 -36.00442 -34.86951 -33.32492 -32.04929 -31.52671 -29.66185 -27.93667 -26.56317 -24.49083 -23.74364 -22.60453 -21.58325 -20.78124 -19.15701 -17.68676 -17.02648 -16.33138 -16.22678 -15.68844 -15.26971 -14.75847 -14.60289 -14.51214 -14.43082 -14.13126 -14.05336 -13.56339 -13.47320 -13.19282 -12.88295 -12.86055 -12.84275 -12.59261 -12.22480 -12.10809 -12.02899 -11.66515 -11.62826 -11.31234 -11.12337 -11.04053 -9.94839 -9.75319 -9.28404 -8.75781 -8.55952 -6.28643 0.14512 0.62019 1.13120 1.20435 1.38020 1.52754 1.58295 2.17999 2.64594 3.12069 3.75821 3.96880 3.97010 4.16868 4.23140 4.32279 4.41811 4.51683 4.59571 4.67094 4.70862 4.73889 4.80281 4.94055 5.02294 5.10734 5.12619 5.14249 5.19946 5.24813 5.34569 5.35988 5.43951 5.46997 5.60060 5.73524 5.77836 5.82394 6.02338 6.13543 6.28092 6.31630 6.34751 6.65428 6.89366 7.02423 8.27345 Molecular weight = 266.14amu Principal moments of inertia in cm(-1) A = 0.039667 B = 0.003891 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.702388 B = 7194.112621 C = 7733.464079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 C -0.113 4.113 4 C -0.111 4.111 5 C -0.146 4.146 6 C -0.019 4.019 7 C -0.195 4.195 8 C -0.094 4.094 9 C -0.192 4.192 10 C 0.088 3.912 11 C -0.477 4.477 12 H 0.085 0.915 13 C 0.033 3.967 14 N -0.818 5.818 15 Si 0.982 3.018 16 H -0.255 1.255 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.216 4.216 20 C -0.080 4.080 21 C -0.075 4.075 22 C -0.151 4.151 23 C -0.113 4.113 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.289 0.711 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 -10.755 2.859 12.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.114 4.114 4 C -0.129 4.129 5 C -0.164 4.164 6 C -0.019 4.019 7 C -0.197 4.197 8 C -0.112 4.112 9 C -0.211 4.211 10 C 0.085 3.915 11 C -0.506 4.506 12 H 0.103 0.897 13 C -0.183 4.183 14 N -0.444 5.444 15 Si 0.803 3.197 16 H -0.178 1.178 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.217 4.217 20 C -0.136 4.136 21 C -0.093 4.093 22 C -0.169 4.169 23 C -0.131 4.131 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.158 0.842 30 H 0.140 0.860 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.098 -10.765 2.658 12.655 hybrid contribution 0.446 1.102 -0.567 1.318 sum -5.651 -9.663 2.090 11.388 Atomic orbital electron populations 1.21740 0.94383 1.02312 1.01699 1.20517 0.96383 0.90992 1.03485 1.20169 1.00936 0.97649 0.92598 1.21148 0.99188 0.94010 0.98551 1.21337 1.02174 0.95738 0.97174 1.19028 0.96454 0.92430 0.94005 1.18475 1.13686 0.94247 0.93248 1.20722 0.99090 0.94799 0.96582 1.20958 1.06199 0.95753 0.98215 1.17953 0.88850 0.93395 0.91287 1.19911 1.29443 0.97169 1.04052 0.89656 1.26864 0.92689 1.04887 0.93875 1.69879 1.23687 1.38829 1.11958 0.85148 0.78933 0.76201 0.79426 1.17792 1.19051 1.19057 1.19908 1.10812 0.95495 0.95462 1.20394 1.00724 0.99337 0.93188 1.20573 0.98164 0.94085 0.96518 1.21322 1.02441 0.95866 0.97257 1.21116 0.99382 0.93955 0.98627 0.90827 0.93091 0.93308 0.90409 0.90156 0.84154 0.85959 0.87804 0.88196 0.89986 0.92654 0.91997 0.92918 0.86489 0.86795 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.89 71.98 0.71 -1.67 16 2 C -0.08 -1.41 6.06 29.85 0.18 -1.23 16 3 C -0.11 -2.96 5.14 -19.79 -0.10 -3.06 16 4 C -0.11 -3.09 9.68 22.24 0.22 -2.87 16 5 C -0.15 -4.97 9.43 22.53 0.21 -4.75 16 6 C -0.02 -0.76 5.88 -20.03 -0.12 -0.87 16 7 C -0.20 -9.00 5.90 -19.87 -0.12 -9.12 16 8 C -0.09 -4.59 9.36 22.22 0.21 -4.38 16 9 C -0.19 -10.35 8.62 22.47 0.19 -10.15 16 10 C 0.09 4.73 5.56 -21.28 -0.12 4.61 16 11 C -0.48 -25.07 8.09 23.39 0.19 -24.88 16 12 H 0.09 4.27 6.88 -2.91 -0.02 4.25 16 13 C 0.03 1.62 5.15 85.28 0.44 2.06 16 14 N -0.82 -42.57 10.99 21.84 0.24 -42.33 16 15 Si 0.98 37.42 29.59 68.60 2.03 39.45 16 16 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 17 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 19 C -0.22 -10.45 5.90 -19.67 -0.12 -10.56 16 20 C -0.08 -3.22 9.39 71.24 0.67 -2.55 16 21 C -0.08 -3.42 9.00 22.22 0.20 -3.22 16 22 C -0.15 -5.36 9.43 22.53 0.21 -5.15 16 23 C -0.11 -3.27 9.68 22.23 0.22 -3.05 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 1.27 8.08 -2.38 -0.02 1.25 16 28 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 29 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.12 3.92 6.18 -2.91 -0.02 3.90 16 31 H 0.10 4.63 6.18 -2.91 -0.02 4.61 16 32 H 0.10 5.60 6.23 -2.91 -0.02 5.58 16 33 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 34 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 36 H 0.05 2.19 6.77 -2.38 -0.02 2.18 16 37 H 0.12 4.58 6.18 -2.91 -0.02 4.56 16 38 H 0.11 4.03 6.18 -2.91 -0.02 4.01 16 39 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -59.61 319.87 6.39 -53.22 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 1.04 Total: 30.52 kcal Atomic # 6 Polarization: -83.94 SS G_CDS: 3.08 Total: -80.87 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.24 Total: -42.33 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -59.61 6.39 -53.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239589318.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.621 kcal (2) G-P(sol) polarization free energy of solvation -59.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds