Wall clock time and date at job start Mon Mar 30 2020 01:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46979 * 2 1 4 4 C 1.50699 * 109.47238 * 239.99382 * 2 1 3 5 5 H 1.07997 * 119.99713 * 275.10553 * 4 2 1 6 6 C 1.37875 * 120.00035 * 95.10612 * 4 2 1 7 7 N 1.31507 * 120.00038 * 184.90888 * 6 4 2 8 8 Si 1.86797 * 119.99884 * 4.90784 * 6 4 2 9 9 H 1.48504 * 109.47280 * 84.82148 * 8 6 4 10 10 H 1.48499 * 109.47338 * 204.82133 * 8 6 4 11 11 H 1.48504 * 109.47368 * 324.82378 * 8 6 4 12 12 C 1.50707 * 109.47128 * 119.99244 * 2 1 3 13 13 O 1.21283 * 120.00032 * 119.99686 * 12 2 1 14 14 N 1.34772 * 119.99987 * 300.00398 * 12 2 1 15 15 C 1.46503 * 120.00134 * 179.97438 * 14 12 2 16 16 C 1.52994 * 109.47493 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47414 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47242 * 179.97438 * 17 16 15 19 19 N 1.30523 * 126.34697 * 90.02470 * 18 17 16 20 20 N 1.28591 * 109.67071 * 179.97438 * 19 18 17 21 21 C 1.30516 * 109.67556 * 0.02562 * 20 19 18 22 22 N 1.35487 * 107.30626 * 359.97438 * 21 20 19 23 23 C 1.46503 * 126.97613 * 179.97438 * 22 21 20 24 24 H 1.09007 * 109.47203 * 175.08013 * 1 2 3 25 25 H 1.09003 * 109.47233 * 295.07837 * 1 2 3 26 26 H 1.08997 * 109.47120 * 55.07862 * 1 2 3 27 27 H 0.97004 * 120.00179 * 179.97438 * 7 6 4 28 28 H 0.97005 * 120.00311 * 359.97438 * 14 12 2 29 29 H 1.08999 * 109.47118 * 59.99185 * 15 14 12 30 30 H 1.09008 * 109.47011 * 299.99853 * 15 14 12 31 31 H 1.09002 * 109.47080 * 59.99667 * 16 15 14 32 32 H 1.09008 * 109.46911 * 299.99961 * 16 15 14 33 33 H 1.08997 * 109.46792 * 59.99975 * 17 16 15 34 34 H 1.08998 * 109.46631 * 300.00247 * 17 16 15 35 35 H 1.08000 * 126.34439 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.46985 * 270.01809 * 23 22 21 37 37 H 1.08994 * 109.47764 * 30.02427 * 23 22 21 38 38 H 1.09006 * 109.46850 * 150.02348 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1339 -1.7857 -1.2293 6 6 2.3623 0.0120 -2.3573 7 7 2.7082 -0.6131 -3.4614 8 14 2.3182 1.8790 -2.3158 9 1 3.6038 2.3928 -1.7788 10 1 2.1127 2.4000 -3.6911 11 1 1.2029 2.3286 -1.4444 12 6 2.0323 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1195 14 7 1.7067 -0.2497 2.4546 15 6 2.1946 -0.9405 3.6509 16 6 1.6852 -0.2188 4.9000 17 6 2.1941 -0.9405 6.1494 18 6 1.6929 -0.2292 7.3798 19 7 0.5765 -0.4701 8.0117 20 7 0.4686 0.3236 9.0176 21 6 1.5108 1.1073 9.0728 22 7 2.3176 0.7787 8.0351 23 6 3.6038 1.3899 7.6911 24 1 -0.3634 -1.0239 -0.0881 25 1 -0.3634 0.4356 0.9308 26 1 -0.3633 0.5883 -0.8426 27 1 2.9400 -0.1048 -4.2543 28 1 1.1493 0.5392 2.5436 29 1 3.2845 -0.9410 3.6511 30 1 1.8308 -1.9681 3.6509 31 1 0.5951 -0.2179 4.9001 32 1 2.0493 0.8087 4.8999 33 1 3.2841 -0.9417 6.1495 34 1 1.8297 -1.9678 6.1492 35 1 1.6961 1.8749 9.8096 36 1 3.4385 2.2267 7.0125 37 1 4.0901 1.7483 8.5983 38 1 4.2399 0.6492 7.2063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261742033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:41 Heat of formation + Delta-G solvation = 28.631193 kcal Electronic energy + Delta-G solvation = -19507.760621 eV Core-core repulsion = 16386.476801 eV Total energy + Delta-G solvation = -3121.283819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.40842 -38.94642 -36.09960 -35.23920 -33.64618 -33.18377 -31.32373 -30.07415 -28.09261 -26.41678 -25.24786 -22.92171 -22.68071 -21.66438 -20.94264 -19.21657 -17.49310 -17.04675 -16.68196 -16.10193 -15.95909 -15.40685 -15.16277 -14.56556 -14.03588 -13.99494 -13.90873 -13.27576 -13.06371 -12.72554 -12.60790 -12.36730 -12.10913 -11.83153 -11.56099 -11.41888 -11.16446 -11.03950 -10.76288 -10.60734 -10.54565 -10.26666 -9.82447 -9.49961 -9.17428 -8.70367 -8.56175 -8.50791 -6.07011 -4.06175 1.47499 2.11720 2.60862 3.22867 3.29147 3.32293 3.63465 3.70221 4.00745 4.14028 4.23985 4.37394 4.49990 4.54547 4.83673 4.89275 4.93150 4.99411 5.23296 5.26527 5.38032 5.58329 5.61947 5.83152 5.86199 5.99148 6.12859 6.15709 6.39405 6.48964 6.53591 6.83193 6.98256 7.18682 7.55597 8.14627 8.45719 8.54446 9.08904 9.15712 9.52595 11.06419 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.035076 B = 0.003303 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.076610 B = 8475.894351 C = 8634.234950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.005 4.005 3 H 0.053 0.947 4 C -0.495 4.495 5 H 0.086 0.914 6 C 0.071 3.929 7 N -0.895 5.895 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.265 1.265 12 C 0.518 3.482 13 O -0.530 6.530 14 N -0.751 5.751 15 C 0.121 3.879 16 C -0.124 4.124 17 C -0.031 4.031 18 C 0.183 3.817 19 N -0.293 5.293 20 N -0.298 5.298 21 C 0.144 3.856 22 N -0.477 5.477 23 C 0.070 3.930 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.054 0.946 27 H 0.264 0.736 28 H 0.394 0.606 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.217 0.783 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.453 7.846 23.286 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.027 4.027 3 H 0.071 0.929 4 C -0.533 4.533 5 H 0.104 0.896 6 C -0.131 4.131 7 N -0.533 5.533 8 Si 0.699 3.301 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.190 1.190 12 C 0.307 3.693 13 O -0.404 6.404 14 N -0.406 5.406 15 C -0.003 4.003 16 C -0.163 4.163 17 C -0.071 4.071 18 C -0.085 4.085 19 N -0.133 5.133 20 N -0.137 5.137 21 C -0.144 4.144 22 N -0.168 5.168 23 C -0.073 4.073 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.227 0.773 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.234 0.766 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.730 6.503 23.349 24.249 hybrid contribution 1.130 2.228 -0.192 2.505 sum 1.860 8.731 23.157 24.818 Atomic orbital electron populations 1.21951 0.96767 1.01423 0.99036 1.19344 0.94070 0.96890 0.92353 0.92885 1.20760 1.42903 0.96215 0.93424 0.89610 1.25034 0.94711 0.98001 0.95352 1.69883 1.46087 1.35676 1.01670 0.86953 0.78899 0.86759 0.77473 1.20190 1.21252 1.18956 1.21766 0.79006 0.84572 0.83979 1.90582 1.36977 1.26260 1.86554 1.46328 1.55787 1.32752 1.05709 1.21141 0.99055 0.96567 0.83565 1.21754 1.02472 0.99472 0.92642 1.19997 1.00908 0.99643 0.86593 1.24929 0.92411 0.92087 0.99044 1.74301 1.15113 1.20077 1.03792 1.74256 1.20049 1.05069 1.14332 1.26434 0.89904 1.03673 0.94350 1.46232 1.19373 1.28290 1.22921 1.22164 0.81943 0.99847 1.03355 0.92866 0.95499 0.92741 0.92548 0.77263 0.91983 0.91610 0.90300 0.91517 0.89554 0.87625 0.76614 0.89648 0.88904 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.12 37.16 0.34 -2.31 16 2 C 0.00 -0.11 2.30 -92.92 -0.21 -0.32 16 3 H 0.05 1.18 5.29 -51.93 -0.27 0.90 16 4 C -0.49 -14.17 8.36 -34.44 -0.29 -14.46 16 5 H 0.09 2.80 7.61 -52.49 -0.40 2.40 16 6 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 7 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 8 Si 0.87 20.73 26.99 -169.99 -4.59 16.14 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -5.79 6.82 56.52 0.39 -5.40 16 12 C 0.52 11.21 7.15 -10.98 -0.08 11.13 16 13 O -0.53 -13.66 15.77 5.56 0.09 -13.57 16 14 N -0.75 -11.75 5.42 -60.29 -0.33 -12.07 16 15 C 0.12 1.53 5.67 -4.04 -0.02 1.50 16 16 C -0.12 -1.13 5.31 -26.73 -0.14 -1.27 16 17 C -0.03 -0.25 5.57 -27.88 -0.16 -0.41 16 18 C 0.18 1.84 7.28 -154.99 -1.13 0.71 16 19 N -0.29 -3.97 12.21 32.79 0.40 -3.57 16 20 N -0.30 -3.83 12.21 29.68 0.36 -3.46 16 21 C 0.14 1.20 12.74 -89.96 -1.15 0.05 16 22 N -0.48 -3.56 3.15 -122.69 -0.39 -3.95 16 23 C 0.07 0.22 11.04 59.85 0.66 0.88 16 24 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 25 H 0.03 0.42 7.43 -51.93 -0.39 0.04 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.39 5.12 7.83 -40.82 -0.32 4.80 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 33 H 0.09 0.51 7.21 -51.93 -0.37 0.13 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.22 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.09 0.22 7.20 -51.93 -0.37 -0.15 16 LS Contribution 322.98 15.07 4.87 4.87 Total: -1.00 -37.96 322.98 -6.59 -44.55 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -5.51 Total: 0.39 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.27 Total: -2.57 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.82 Total: -49.81 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.59 Total: 16.14 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -37.96 -6.59 -44.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261742033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.182 kcal (2) G-P(sol) polarization free energy of solvation -37.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds