Wall clock time and date at job start Mon Mar 30 2020 01:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 N 1.46500 * 109.47272 * 180.02562 * 3 2 1 5 5 C 1.36932 * 120.00180 * 275.31171 * 4 3 2 6 6 H 1.07996 * 120.00300 * 37.57935 * 5 4 3 7 7 C 1.38814 * 119.99976 * 217.57709 * 5 4 3 8 8 N 1.31617 * 119.99981 * 21.42266 * 7 5 4 9 9 Si 1.86797 * 119.99839 * 201.42326 * 7 5 4 10 10 H 1.48498 * 109.47401 * 60.00264 * 9 7 5 11 11 H 1.48502 * 109.46930 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47177 * 300.00017 * 9 7 5 13 13 C 1.46504 * 119.99775 * 95.31256 * 4 3 2 14 14 C 1.53005 * 109.46890 * 270.00315 * 13 4 3 15 15 N 1.46504 * 109.46890 * 180.02562 * 14 13 4 16 16 C 1.34770 * 119.99852 * 179.97438 * 15 14 13 17 17 O 1.21611 * 120.00366 * 0.02562 * 16 15 14 18 18 C 1.47428 * 120.00066 * 180.02562 * 16 15 14 19 19 C 1.41292 * 126.41497 * 0.04026 * 18 16 15 20 20 N 1.30453 * 108.02336 * 179.70909 * 19 18 16 21 21 N 1.39932 * 108.89327 * 0.40679 * 20 19 18 22 22 H 0.97001 * 125.75001 * 179.84468 * 21 20 19 23 23 C 1.34255 * 108.49674 * 359.58888 * 21 20 19 24 24 H 1.09003 * 109.46463 * 299.99675 * 1 2 3 25 25 H 1.08998 * 109.47340 * 59.99315 * 1 2 3 26 26 H 1.08994 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46663 * 240.00838 * 2 1 3 28 28 H 1.08992 * 109.47667 * 120.00405 * 2 1 3 29 29 H 1.09005 * 109.47080 * 60.00195 * 3 2 1 30 30 H 1.08998 * 109.47527 * 300.00570 * 3 2 1 31 31 H 0.96994 * 120.00081 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47259 * 150.00051 * 13 4 3 33 33 H 1.08999 * 109.47106 * 29.99724 * 13 4 3 34 34 H 1.08993 * 109.47211 * 60.00197 * 14 13 4 35 35 H 1.08999 * 109.46763 * 299.99619 * 14 13 4 36 36 H 0.97003 * 120.00014 * 0.02562 * 15 14 13 37 37 H 1.07997 * 125.98452 * 359.97438 * 19 18 16 38 38 H 1.08000 * 126.29179 * 180.22760 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1903 1.3326 1.1798 6 1 3.8188 0.6869 1.9618 7 6 5.3625 2.0510 1.3714 8 7 5.6026 3.1237 0.6477 9 14 6.5991 1.4951 2.6565 10 1 7.0677 0.1239 2.3320 11 1 7.7566 2.4254 2.6645 12 1 5.9557 1.4946 3.9949 13 6 4.2370 1.5602 -1.2642 14 6 4.4917 0.1648 -1.8379 15 7 5.2241 0.2824 -3.1012 16 6 5.5612 -0.8256 -3.7904 17 8 5.2570 -1.9231 -3.3639 18 6 6.2988 -0.7073 -5.0614 19 6 6.7192 0.4921 -5.6787 20 7 7.3437 0.1813 -6.7811 21 7 7.3445 -1.2106 -6.9244 22 1 7.7412 -1.7045 -7.6591 23 6 6.7087 -1.7477 -5.8710 24 1 -0.3632 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8935 -0.5138 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 6.4215 3.6259 0.7818 32 1 5.1895 2.0597 -1.0873 33 1 3.6476 2.1422 -1.9727 34 1 3.5392 -0.3347 -2.0149 35 1 5.0811 -0.4172 -1.1295 36 1 5.4671 1.1578 -3.4413 37 1 6.5561 1.4909 -5.3016 38 1 6.5474 -2.8001 -5.6902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267310908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:39 Heat of formation + Delta-G solvation = 45.419107 kcal Electronic energy + Delta-G solvation = -19964.473865 eV Core-core repulsion = 16843.918025 eV Total energy + Delta-G solvation = -3120.555841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.37413 -38.72443 -36.41385 -34.15634 -32.85954 -31.93351 -30.83706 -30.29565 -27.95405 -25.53866 -23.94559 -22.35859 -22.03600 -20.79360 -20.22246 -19.75612 -18.55260 -16.67823 -15.85900 -15.34708 -15.24738 -14.90062 -14.66028 -14.40084 -14.18563 -13.77751 -13.35643 -12.98315 -12.85606 -12.73317 -12.49907 -11.54881 -11.46468 -11.26634 -11.14564 -10.91183 -10.70881 -10.42115 -10.32892 -10.05693 -9.98923 -9.84602 -9.72207 -9.47405 -8.93975 -8.50908 -8.34132 -6.59674 -5.81554 -3.40206 1.49558 2.14187 2.57038 3.37716 3.43429 3.47579 3.71592 3.75152 4.48218 4.60498 4.74815 5.16987 5.25806 5.29791 5.49484 5.67216 5.71138 5.79275 6.05702 6.16935 6.21310 6.31066 6.32494 6.46131 6.57946 6.65610 6.70077 6.92317 6.96426 7.00655 7.07698 7.21542 7.33545 7.58093 7.82125 8.04465 8.50166 8.70122 9.16885 9.78806 10.36747 11.18517 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.015774 B = 0.005167 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.656921 B = 5417.478867 C = 6515.778989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.261 4.261 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.137 3.863 14 C 0.099 3.901 15 N -0.715 5.715 16 C 0.586 3.414 17 O -0.558 6.558 18 C -0.285 4.285 19 C 0.085 3.915 20 N -0.300 5.300 21 N -0.468 5.468 22 H 0.442 0.558 23 C 0.126 3.874 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.099 0.901 33 H 0.029 0.971 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.396 0.604 37 H 0.192 0.808 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -5.604 -12.766 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.206 1.206 13 C 0.009 3.991 14 C -0.026 4.026 15 N -0.365 5.365 16 C 0.372 3.628 17 O -0.438 6.438 18 C -0.300 4.300 19 C -0.103 4.103 20 N -0.121 5.121 21 N -0.174 5.174 22 H 0.287 0.713 23 C -0.026 4.026 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.209 0.791 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.563 -5.733 -13.403 14.588 hybrid contribution 0.632 -0.523 0.814 1.156 sum 1.194 -6.256 -12.589 14.109 Atomic orbital electron populations 1.21722 0.97386 1.00370 1.00971 1.22192 0.93761 1.00980 1.01608 1.20932 0.85076 0.92950 0.98885 1.43592 0.99418 1.84837 1.02086 1.18975 1.05698 1.20417 0.94015 0.92142 1.25163 1.00778 0.94522 0.98089 1.69979 1.25738 1.14734 1.42507 0.86480 0.81039 0.78317 0.81646 1.20781 1.21607 1.20638 1.21070 1.00322 0.91276 0.86395 1.22443 0.94831 1.02671 0.82640 1.45902 1.57875 1.08199 1.24482 1.17250 0.78475 0.84564 0.82532 1.90751 1.56331 1.26549 1.70176 1.20517 1.15192 0.92809 1.01478 1.24176 0.94765 0.99541 0.91816 1.77140 1.23973 0.90247 1.20755 1.46207 1.45045 1.05821 1.20287 0.71326 1.23040 0.92500 1.00016 0.87069 0.93235 0.93481 0.93838 0.92873 0.92373 0.93632 0.94754 0.93464 0.88385 0.95286 0.92983 0.91756 0.77092 0.79088 0.79277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.15 -2.67 6.23 -26.73 -0.17 -2.83 16 3 C 0.15 3.06 5.72 -4.04 -0.02 3.04 16 4 N -0.58 -13.93 2.43 -173.23 -0.42 -14.35 16 5 C -0.26 -6.97 9.45 -15.06 -0.14 -7.11 16 6 H 0.06 1.63 7.92 -52.49 -0.42 1.21 16 7 C 0.01 0.40 4.95 -17.43 -0.09 0.31 16 8 N -0.89 -24.58 11.47 55.49 0.64 -23.94 16 9 Si 0.90 21.36 29.60 -169.99 -5.03 16.32 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 C 0.14 3.01 5.45 -4.04 -0.02 2.99 16 14 C 0.10 2.01 6.00 -4.04 -0.02 1.99 16 15 N -0.71 -12.05 5.55 -61.38 -0.34 -12.39 16 16 C 0.59 10.04 7.81 -12.52 -0.10 9.94 16 17 O -0.56 -11.54 16.90 5.27 0.09 -11.45 16 18 C -0.28 -3.84 6.13 -105.06 -0.64 -4.48 16 19 C 0.09 1.01 11.50 -16.98 -0.20 0.82 16 20 N -0.30 -3.56 12.63 30.86 0.39 -3.17 16 21 N -0.47 -4.27 7.29 30.85 0.22 -4.05 16 22 H 0.44 2.32 8.96 -182.72 -1.64 0.68 16 23 C 0.13 1.34 11.82 -16.56 -0.20 1.14 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.00 6.64 -51.93 -0.34 0.66 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 30 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.10 2.42 5.52 -51.93 -0.29 2.13 16 33 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 34 H 0.05 1.08 6.64 -51.93 -0.34 0.73 16 35 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.40 5.58 7.43 -40.82 -0.30 5.28 16 37 H 0.19 1.77 7.50 -52.49 -0.39 1.38 16 38 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 323.63 15.07 4.88 4.88 Total: -1.00 -32.66 323.63 -7.44 -40.09 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.63 Total: 4.06 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.23 Total: 3.99 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: 0.49 Total: -57.90 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.66 -7.44 -40.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267310908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.514 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds