Wall clock time and date at job start Mon Mar 30 2020 00:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30518 * 126.34487 * 2 1 4 4 N 1.28604 * 109.66680 * 179.97438 * 3 2 1 5 5 C 1.30519 * 109.67489 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.34573 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47021 * 89.97011 * 6 5 4 8 8 C 1.34778 * 119.99666 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00388 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99668 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47056 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47050 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.47017 * 179.97438 * 12 11 10 14 14 H 1.08004 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00193 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00158 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99943 * 359.97438 * 15 13 12 18 18 H 1.48496 * 109.47115 * 90.00090 * 17 15 13 19 19 H 1.48501 * 109.47073 * 210.00045 * 17 15 13 20 20 H 1.48502 * 109.47154 * 330.00363 * 17 15 13 21 21 N 1.35487 * 126.34300 * 179.97438 * 2 1 3 22 22 C 1.46500 * 126.98328 * 0.03570 * 21 2 1 23 23 H 1.08996 * 109.47221 * 90.02384 * 1 2 3 24 24 H 1.09000 * 109.47554 * 210.02742 * 1 2 3 25 25 H 1.09005 * 109.46969 * 330.02216 * 1 2 3 26 26 H 1.09000 * 109.46900 * 209.96980 * 6 5 4 27 27 H 1.08999 * 109.47044 * 329.97450 * 6 5 4 28 28 H 0.96998 * 120.00205 * 359.97438 * 7 6 5 29 29 H 1.09000 * 109.46933 * 299.99353 * 10 8 7 30 30 H 1.09004 * 109.47615 * 59.99769 * 10 8 7 31 31 H 1.09004 * 109.46745 * 300.00038 * 11 10 8 32 32 H 1.09004 * 109.46982 * 59.99522 * 11 10 8 33 33 H 1.09000 * 109.47213 * 299.99661 * 12 11 10 34 34 H 1.09004 * 109.47342 * 60.00081 * 12 11 10 35 35 H 0.97001 * 120.00258 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47418 * 270.00176 * 22 21 2 37 37 H 1.09007 * 109.47249 * 30.00075 * 22 21 2 38 38 H 1.09003 * 109.47398 * 149.99691 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5125 0.6822 0.0005 5 6 3.5807 -0.6212 0.0004 6 6 4.8396 -1.4497 0.0014 7 7 5.2466 -1.7178 1.3830 8 6 6.3536 -2.4457 1.6301 9 8 7.0131 -2.8784 0.7088 10 6 6.7720 -2.7220 3.0512 11 6 8.0502 -3.5630 3.0523 12 6 8.4753 -3.8430 4.4951 13 6 9.7338 -4.6718 4.4961 14 1 10.1856 -4.9689 3.5611 15 6 10.3087 -5.0510 5.6906 16 7 11.4073 -5.7740 5.6915 17 14 9.5277 -4.5367 7.3078 18 1 8.5503 -5.5694 7.7360 19 1 10.5824 -4.3937 8.3434 20 1 8.8297 -3.2382 7.1295 21 7 2.3100 -1.0913 0.0005 22 6 1.8896 -2.4947 0.0004 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3634 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 4.6541 -2.3930 -0.5123 27 1 5.6327 -0.9061 -0.5120 28 1 4.7198 -1.3708 2.1198 29 1 6.9569 -1.7788 3.5654 30 1 5.9790 -3.2662 3.5643 31 1 7.8649 -4.5062 2.5381 32 1 8.8433 -3.0192 2.5391 33 1 8.6606 -2.8996 5.0088 34 1 7.6822 -4.3866 5.0086 35 1 11.8115 -6.0411 6.5319 36 1 1.7848 -2.8427 1.0280 37 1 0.9330 -2.5875 -0.5140 38 1 2.6382 -3.0982 -0.5131 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001295610720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:25 Heat of formation + Delta-G solvation = 26.029522 kcal Electronic energy + Delta-G solvation = -19257.000373 eV Core-core repulsion = 16135.603737 eV Total energy + Delta-G solvation = -3121.396636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.58885 -39.62289 -35.76671 -35.21444 -34.29709 -32.73722 -32.07059 -29.62759 -28.32713 -27.86887 -26.36774 -23.59038 -21.69918 -21.29549 -20.66330 -19.88847 -17.59092 -17.12122 -16.90877 -16.50213 -15.86263 -15.73959 -14.91095 -14.53956 -14.15343 -14.12058 -13.96063 -13.53049 -13.39277 -13.12209 -12.97463 -12.85316 -12.64166 -12.00962 -11.88497 -11.62871 -11.00284 -10.79709 -10.73351 -10.65030 -10.09401 -9.90788 -9.73299 -9.67032 -9.33657 -9.28476 -9.13532 -8.51416 -6.01042 -3.98902 1.21753 1.94034 2.37431 2.74067 3.23054 3.30971 3.38641 3.41499 3.74260 3.90411 4.05681 4.37836 4.46770 4.47551 4.67706 4.77451 4.89161 4.94325 5.18504 5.27606 5.32193 5.39782 5.48059 5.52670 5.56601 5.70464 6.04885 6.15842 6.34551 6.54090 6.66777 6.90688 7.33512 7.38465 7.44611 7.82102 8.24215 8.32765 8.58663 9.05661 9.60953 11.12621 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.002958 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.157822 B = 9463.622783 C = 9706.316099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.176 3.824 3 N -0.293 5.293 4 N -0.271 5.271 5 C 0.155 3.845 6 C 0.211 3.789 7 N -0.737 5.737 8 C 0.517 3.483 9 O -0.530 6.530 10 C -0.140 4.140 11 C -0.087 4.087 12 C -0.015 4.015 13 C -0.519 4.519 14 H 0.073 0.927 15 C 0.064 3.936 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 N -0.468 5.468 22 C 0.068 3.932 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.402 0.598 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.016 0.984 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.121 8.252 -10.703 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 N -0.135 5.135 4 N -0.112 5.112 5 C -0.112 4.112 6 C 0.085 3.915 7 N -0.393 5.393 8 C 0.306 3.694 9 O -0.405 6.405 10 C -0.180 4.180 11 C -0.126 4.126 12 C -0.052 4.052 13 C -0.557 4.557 14 H 0.091 0.909 15 C -0.137 4.137 16 N -0.543 5.543 17 Si 0.709 3.291 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.190 1.190 21 N -0.159 5.159 22 C -0.075 4.075 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.236 0.764 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.034 0.966 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -25.062 9.256 -11.277 29.000 hybrid contribution -1.056 -1.007 1.251 1.922 sum -26.118 8.249 -10.026 29.167 Atomic orbital electron populations 1.20246 0.83514 1.04745 1.04139 1.24937 0.97199 0.82802 1.04130 1.74331 0.96313 1.23828 1.18984 1.74326 1.12226 1.07827 1.16809 1.24714 0.86755 0.92743 1.06951 1.19403 0.89169 0.97157 0.85782 1.46134 1.29283 1.56701 1.07170 1.21220 0.78849 0.76488 0.92891 1.90716 1.52637 1.50433 1.46709 1.21883 1.01657 1.03022 0.91436 1.21281 0.93191 0.98451 0.99632 1.19608 0.96838 0.96632 0.92123 1.21161 1.08007 1.31988 0.94548 0.90910 1.25055 0.94749 0.94696 0.99156 1.69922 1.19955 1.37679 1.26783 0.86761 0.79126 0.79602 0.83652 1.20394 1.21436 1.19027 1.46053 1.06581 1.09067 1.54205 1.22210 1.02996 0.77595 1.04732 0.89479 0.90299 0.88453 0.89683 0.87859 0.76444 0.89100 0.89335 0.92059 0.91928 0.96607 0.97136 0.92783 0.89449 0.88741 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.06 36.01 0.36 0.10 16 2 C 0.18 1.54 8.03 -154.99 -1.24 0.29 16 3 N -0.29 -3.74 12.21 32.80 0.40 -3.34 16 4 N -0.27 -3.67 12.21 32.80 0.40 -3.27 16 5 C 0.16 1.62 7.40 -154.99 -1.15 0.47 16 6 C 0.21 2.13 6.02 -5.19 -0.03 2.10 16 7 N -0.74 -7.98 5.55 -61.47 -0.34 -8.32 16 8 C 0.52 7.50 7.83 -10.98 -0.09 7.42 16 9 O -0.53 -9.76 15.98 5.56 0.09 -9.67 16 10 C -0.14 -2.08 5.70 -27.88 -0.16 -2.23 16 11 C -0.09 -1.77 4.44 -26.73 -0.12 -1.89 16 12 C -0.01 -0.35 4.04 -27.89 -0.11 -0.46 16 13 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 14 H 0.07 2.30 7.99 -52.48 -0.42 1.88 16 15 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 16 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 17 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 N -0.47 -3.63 3.15 -118.00 -0.37 -4.00 16 22 C 0.07 0.24 10.71 59.85 0.64 0.88 16 23 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.08 0.14 7.86 -51.93 -0.41 -0.27 16 25 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.75 7.22 -51.93 -0.37 0.37 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.40 3.65 8.46 -40.82 -0.35 3.31 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 32 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 33 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 34 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.09 0.11 7.81 -51.92 -0.41 -0.29 16 38 H 0.10 0.30 7.20 -51.93 -0.37 -0.07 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -37.42 325.31 -6.78 -44.20 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -5.64 Total: -3.08 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.33 Total: -6.93 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.86 Total: -46.44 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.42 -6.78 -44.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001295610720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.230 kcal (2) G-P(sol) polarization free energy of solvation -37.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds