Wall clock time and date at job start Mon Mar 30 2020 00:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30499 * 125.65123 * 2 1 4 4 C 1.34127 * 109.25921 * 180.28830 * 3 2 1 5 5 C 1.34669 * 108.01600 * 359.73283 * 4 3 2 6 6 N 1.35042 * 125.65384 * 179.82583 * 2 1 3 7 7 C 1.46505 * 126.39296 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47064 * 84.71650 * 7 6 2 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00271 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47194 * 179.97438 * 11 10 8 13 13 H 1.09004 * 109.47610 * 64.99781 * 12 11 10 14 14 C 1.53000 * 109.47086 * 185.00163 * 12 11 10 15 15 N 1.46506 * 109.47098 * 304.99920 * 12 11 10 16 16 C 1.36936 * 119.99813 * 155.00377 * 15 12 11 17 17 H 1.07991 * 120.00195 * 359.97438 * 16 15 12 18 18 C 1.38820 * 119.99442 * 179.97438 * 16 15 12 19 19 N 1.31617 * 120.00165 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99594 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47407 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47240 * 119.99802 * 20 18 16 23 23 H 1.48502 * 109.47025 * 239.99742 * 20 18 16 24 24 H 1.08998 * 109.47677 * 270.17429 * 1 2 3 25 25 H 1.09003 * 109.47218 * 30.17595 * 1 2 3 26 26 H 1.09004 * 109.47110 * 150.17397 * 1 2 3 27 27 H 1.08001 * 125.99003 * 179.71998 * 4 3 2 28 28 H 1.08005 * 126.58968 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47068 * 204.71619 * 7 6 2 30 30 H 1.09001 * 109.47372 * 324.71707 * 7 6 2 31 31 H 0.97005 * 119.99463 * 359.97438 * 10 8 7 32 32 H 1.09002 * 109.47021 * 299.99722 * 11 10 8 33 33 H 1.09001 * 109.47001 * 59.99554 * 11 10 8 34 34 H 1.08994 * 109.47556 * 59.99826 * 14 12 11 35 35 H 1.09001 * 109.47332 * 180.02562 * 14 12 11 36 36 H 1.09000 * 109.46950 * 299.99500 * 14 12 11 37 37 H 0.97002 * 119.99446 * 334.99903 * 15 12 11 38 38 H 0.96994 * 120.00002 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 -0.0064 5 6 3.5925 -0.6642 -0.0045 6 7 2.2941 -1.0973 0.0033 7 6 1.8425 -2.4910 0.0081 8 6 1.5627 -2.9332 -1.4052 9 8 1.7241 -2.1602 -2.3256 10 7 1.1321 -4.1874 -1.6461 11 6 0.8606 -4.6175 -3.0199 12 6 0.3889 -6.0729 -3.0150 13 1 -0.5674 -6.1432 -2.4965 14 6 0.2250 -6.5608 -4.4558 15 7 1.3795 -6.9049 -2.3273 16 6 0.9976 -8.0844 -1.7457 17 1 -0.0337 -8.4010 -1.7935 18 6 1.9364 -8.8730 -1.0946 19 7 3.1935 -8.4873 -1.0369 20 14 1.4155 -10.4815 -0.3006 21 1 -0.0413 -10.6851 -0.5042 22 1 2.1640 -11.6045 -0.9200 23 1 1.7095 -10.4334 1.1542 24 1 -0.3634 0.0031 1.0276 25 1 -0.3634 0.8884 -0.5166 26 1 -0.3633 -0.8916 -0.5111 27 1 4.4098 1.3411 -0.0122 28 1 4.4776 -1.2832 -0.0087 29 1 2.6188 -3.1230 0.4396 30 1 0.9327 -2.5761 0.6023 31 1 1.0027 -4.8055 -0.9098 32 1 0.0849 -3.9852 -3.4520 33 1 1.7708 -4.5329 -3.6137 34 1 1.1812 -6.4906 -4.9742 35 1 -0.1115 -7.5976 -4.4523 36 1 -0.5120 -5.9418 -4.9673 37 1 2.3058 -6.6203 -2.2842 38 1 3.8495 -9.0385 -0.5823 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317286221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:32 Heat of formation + Delta-G solvation = 33.568641 kcal Electronic energy + Delta-G solvation = -20001.239804 eV Core-core repulsion = 16880.170089 eV Total energy + Delta-G solvation = -3121.069716 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.09833 -39.45567 -36.49158 -33.94842 -33.72148 -31.98777 -31.73252 -29.02570 -28.23111 -26.78287 -25.40223 -23.74078 -21.40009 -20.79572 -20.33938 -19.53685 -17.71559 -17.17329 -17.10934 -15.64086 -15.56805 -15.11149 -14.82419 -14.31045 -13.98534 -13.72825 -13.63509 -13.14065 -13.01133 -12.68093 -12.65099 -12.39012 -12.29821 -12.21271 -11.94318 -11.48348 -10.98356 -10.86525 -10.45678 -10.27551 -10.10719 -9.94826 -9.83759 -9.39351 -9.10437 -8.85776 -8.27640 -7.16837 -5.93351 -3.24120 2.00149 2.59353 2.63927 3.21074 3.31633 3.38477 3.40507 3.42783 4.44272 4.49362 4.57104 4.69863 4.84911 4.90968 5.28578 5.31706 5.35644 5.41567 5.45154 5.47237 5.73548 5.80429 5.84931 5.95797 6.06765 6.17879 6.30406 6.44533 6.59183 6.67082 6.79978 6.91339 7.15687 7.55762 7.66003 8.14590 8.23758 8.27615 9.36293 9.89940 10.25593 11.28556 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.004149 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.889347 B = 6747.246117 C = 7308.701568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.216 3.784 3 N -0.495 5.495 4 C -0.031 4.031 5 C -0.048 4.048 6 N -0.439 5.439 7 C 0.083 3.917 8 C 0.492 3.508 9 O -0.534 6.534 10 N -0.706 5.706 11 C 0.116 3.884 12 C 0.159 3.841 13 H 0.055 0.945 14 C -0.163 4.163 15 N -0.724 5.724 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.009 4.009 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.168 0.832 28 H 0.173 0.827 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.412 0.588 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.385 0.615 38 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 11.578 2.796 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.046 4.046 3 N -0.215 5.215 4 C -0.178 4.178 5 C -0.180 4.180 6 N -0.121 5.121 7 C -0.044 4.044 8 C 0.275 3.725 9 O -0.411 6.411 10 N -0.358 5.358 11 C -0.008 4.008 12 C 0.049 3.951 13 H 0.073 0.927 14 C -0.224 4.224 15 N -0.367 5.367 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.090 0.910 27 H 0.186 0.814 28 H 0.190 0.810 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.249 0.751 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.219 0.781 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.735 12.637 2.211 13.675 hybrid contribution 0.605 -2.252 0.651 2.421 sum -4.129 10.385 2.862 11.536 Atomic orbital electron populations 1.20161 0.85280 1.04128 1.03056 1.23192 0.95566 0.81228 1.04614 1.70210 1.02322 1.28135 1.20817 1.22188 0.94728 0.92672 1.08252 1.22677 0.86843 0.96935 1.11572 1.44843 1.06768 1.06002 1.54531 1.21720 1.04402 0.81598 0.96713 1.20597 0.78257 0.82831 0.90785 1.90761 1.51835 1.53190 1.45329 1.45923 1.66438 1.12461 1.11002 1.21734 1.00803 0.96232 0.82066 1.20516 0.93988 0.87582 0.92978 0.92746 1.22362 1.00546 1.01418 0.98038 1.42493 1.07303 1.22422 1.64485 1.19271 0.94192 0.96887 1.27220 0.90994 1.24747 0.95441 0.99034 1.01351 1.69665 1.01136 1.38955 1.48042 0.86142 0.77631 0.83697 0.78820 1.20523 1.21825 1.21838 0.90295 0.89211 0.91047 0.81439 0.80973 0.85606 0.86155 0.75112 0.91656 0.91718 0.93183 0.92223 0.94142 0.78128 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.04 36.00 0.36 -0.35 16 2 C 0.22 3.05 7.88 -155.42 -1.23 1.83 16 3 N -0.50 -7.80 11.25 -10.82 -0.12 -7.92 16 4 C -0.03 -0.43 11.87 -17.81 -0.21 -0.64 16 5 C -0.05 -0.63 11.58 -16.57 -0.19 -0.82 16 6 N -0.44 -5.85 2.24 -115.18 -0.26 -6.11 16 7 C 0.08 0.92 6.16 -5.19 -0.03 0.89 16 8 C 0.49 7.17 7.90 -10.98 -0.09 7.08 16 9 O -0.53 -9.93 16.41 5.56 0.09 -9.84 16 10 N -0.71 -10.22 5.39 -60.30 -0.32 -10.54 16 11 C 0.12 1.81 5.23 -4.05 -0.02 1.79 16 12 C 0.16 2.77 3.05 -67.93 -0.21 2.56 16 13 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 14 C -0.16 -2.67 9.49 37.16 0.35 -2.32 16 15 N -0.72 -15.94 4.56 -53.42 -0.24 -16.18 16 16 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 17 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.93 -26.03 13.06 55.49 0.72 -25.31 16 20 Si 0.91 20.87 29.55 -169.99 -5.02 15.84 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 27 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.17 1.82 8.06 -52.48 -0.42 1.39 16 29 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.12 0.98 7.94 -51.93 -0.41 0.57 16 31 H 0.41 5.84 8.14 -40.82 -0.33 5.51 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.38 9.23 7.80 -40.82 -0.32 8.91 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -32.48 329.60 -7.36 -39.84 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.66 Total: 11.83 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.51 Total: 3.43 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -0.22 Total: -66.07 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.48 -7.36 -39.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317286221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.409 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds