Wall clock time and date at job start Mon Mar 30 2020 01:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 N 1.30522 * 126.34497 * 74.69136 * 4 2 1 6 6 N 1.28603 * 109.67280 * 179.82845 * 5 4 2 7 7 C 1.30516 * 109.66940 * 0.44135 * 6 5 4 8 8 N 1.35494 * 126.34820 * 255.00090 * 4 2 1 9 9 C 1.46493 * 126.97882 * 0.02562 * 8 4 2 10 10 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 11 11 C 1.47899 * 110.99452 * 309.87043 * 10 2 1 12 12 C 1.53997 * 107.05935 * 214.15291 * 11 10 2 13 13 C 1.54598 * 105.13707 * 1.23008 * 12 11 10 14 14 O 1.42903 * 110.72141 * 263.59780 * 13 12 11 15 15 C 1.50699 * 110.72405 * 140.31097 * 13 12 11 16 16 H 1.08001 * 120.00123 * 241.44874 * 15 13 12 17 17 C 1.37884 * 119.99717 * 61.45646 * 15 13 12 18 18 N 1.31510 * 120.00051 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 119.99683 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47390 * 90.00066 * 19 17 15 21 21 H 1.48507 * 109.47011 * 209.99471 * 19 17 15 22 22 H 1.48495 * 109.47423 * 329.99571 * 19 17 15 23 23 C 1.48527 * 111.00034 * 192.47745 * 10 2 1 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 1.07997 * 126.34495 * 179.72939 * 7 6 5 28 28 H 1.08999 * 109.47564 * 90.00221 * 9 8 4 29 29 H 1.09001 * 109.47051 * 209.99776 * 9 8 4 30 30 H 1.09000 * 109.47636 * 329.99963 * 9 8 4 31 31 H 1.09004 * 109.92249 * 333.50897 * 11 10 2 32 32 H 1.09000 * 109.91661 * 94.80364 * 11 10 2 33 33 H 1.09005 * 110.30573 * 120.14256 * 12 11 10 34 34 H 1.09003 * 110.31189 * 242.31210 * 12 11 10 35 35 H 0.96699 * 114.00063 * 298.54313 * 14 13 12 36 36 H 0.97002 * 120.00125 * 179.97438 * 18 17 15 37 37 H 1.09001 * 110.66873 * 278.14883 * 23 10 2 38 38 H 1.09003 * 110.66859 * 41.28553 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 2.0286 -1.9995 1.4351 6 7 2.5344 -2.2561 2.5893 7 6 2.8753 -1.1417 3.1771 8 7 2.5664 -0.1290 2.3316 9 6 2.7682 1.3036 2.5616 10 7 2.0197 -0.6924 -1.1995 11 6 1.3618 -2.0075 -1.3580 12 6 2.4019 -2.9617 -1.9738 13 6 3.6877 -2.1162 -2.1218 14 8 3.7964 -1.5887 -3.4454 15 6 4.9053 -2.9311 -1.7691 16 1 5.5355 -2.6313 -0.9448 17 6 5.2149 -4.0593 -2.4988 18 7 4.4472 -4.4244 -3.5023 19 14 6.7245 -5.0689 -2.0621 20 1 6.3529 -6.1129 -1.0735 21 1 7.2590 -5.7156 -3.2875 22 1 7.7619 -4.1812 -1.4783 23 6 3.4736 -0.9771 -1.0935 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 3.3208 -1.0448 4.1561 28 1 1.8825 1.7234 3.0384 29 1 3.6329 1.4494 3.2090 30 1 2.9394 1.8041 1.6085 31 1 1.0433 -2.3830 -0.3855 32 1 0.5030 -1.9154 -2.0228 33 1 2.5796 -3.8074 -1.3093 34 1 2.0642 -3.3107 -2.9497 35 1 3.8541 -2.2645 -4.1346 36 1 4.6652 -5.2179 -4.0159 37 1 4.0585 -0.0985 -1.3654 38 1 3.7274 -1.3136 -0.0883 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326018464.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:59 Heat of formation + Delta-G solvation = 25.090599 kcal Electronic energy + Delta-G solvation = -21652.331748 eV Core-core repulsion = 18530.894397 eV Total energy + Delta-G solvation = -3121.437351 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.12407 -40.24344 -37.19850 -35.93904 -34.18458 -33.57792 -30.82903 -30.15772 -29.35799 -28.37377 -26.28679 -24.93846 -23.22850 -22.54317 -21.34949 -20.53252 -19.02568 -18.13339 -17.35279 -16.97670 -16.88095 -16.54034 -15.97452 -15.58540 -15.36128 -14.93969 -14.43802 -14.25083 -13.73908 -13.70653 -13.54192 -13.35868 -13.08086 -12.82007 -12.67950 -12.62808 -12.39566 -12.28192 -12.16313 -12.02131 -11.66483 -11.16548 -11.06966 -11.01543 -10.61946 -10.19422 -10.08992 -9.42052 -8.23245 -6.37895 0.90691 1.34537 1.36151 1.45480 1.67821 1.96023 2.35082 2.94946 3.02491 3.47527 3.70438 3.88401 3.90057 3.98429 4.08828 4.23210 4.39433 4.42596 4.53501 4.55044 4.69703 4.73402 4.78139 4.79931 4.95673 5.04553 5.09005 5.22253 5.28033 5.37635 5.52604 5.59712 5.72546 5.87629 6.03710 6.10073 6.23244 6.65355 7.32631 7.46478 7.82552 8.82566 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.007182 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.054720 B = 3897.809345 C = 4543.318618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.151 3.849 3 H 0.121 0.879 4 C 0.149 3.851 5 N -0.328 5.328 6 N -0.356 5.356 7 C 0.154 3.846 8 N -0.472 5.472 9 C 0.062 3.938 10 N -0.490 5.490 11 C 0.038 3.962 12 C -0.111 4.111 13 C 0.244 3.756 14 O -0.587 6.587 15 C -0.559 4.559 16 H 0.041 0.959 17 C 0.031 3.969 18 N -0.909 5.909 19 Si 0.955 3.045 20 H -0.280 1.280 21 H -0.272 1.272 22 H -0.273 1.273 23 C 0.068 3.932 24 H 0.081 0.919 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.260 0.740 28 H 0.107 0.893 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.044 0.956 35 H 0.372 0.628 36 H 0.269 0.731 37 H 0.066 0.934 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.936 13.693 12.138 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 H 0.139 0.861 4 C -0.121 4.121 5 N -0.168 5.168 6 N -0.195 5.195 7 C -0.134 4.134 8 N -0.163 5.163 9 C -0.079 4.079 10 N -0.212 5.212 11 C -0.089 4.089 12 C -0.150 4.150 13 C 0.204 3.796 14 O -0.394 6.394 15 C -0.597 4.597 16 H 0.059 0.941 17 C -0.170 4.170 18 N -0.548 5.548 19 Si 0.780 3.220 20 H -0.206 1.206 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.059 4.059 24 H 0.100 0.900 25 H 0.067 0.933 26 H 0.107 0.893 27 H 0.276 0.724 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.220 0.780 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.318 13.034 11.660 18.595 hybrid contribution 1.442 -0.850 0.767 1.841 sum -4.876 12.184 12.427 18.074 Atomic orbital electron populations 1.21851 0.90574 1.02807 1.03970 1.20925 0.97660 0.97571 0.79914 0.86092 1.26333 1.01147 0.91364 0.93303 1.74187 1.19380 1.12854 1.10345 1.74149 1.16449 1.25877 1.02976 1.27190 1.03020 0.82928 1.00311 1.46565 1.45310 1.11100 1.13342 1.22541 1.05935 0.73908 1.05516 1.65141 1.03789 1.20075 1.32227 1.22966 0.96943 0.88456 1.00579 1.22584 0.96618 0.97321 0.98476 1.19466 0.91252 0.88547 0.80302 1.86103 1.96755 1.38699 1.17848 1.21755 1.11574 1.10610 1.15810 0.94112 1.25647 0.99196 0.97567 0.94583 1.69810 1.38788 1.26157 1.20027 0.85620 0.79762 0.78645 0.77964 1.20607 1.19697 1.19745 1.22936 0.88516 0.97701 0.96782 0.90009 0.93258 0.89290 0.72425 0.87437 0.86515 0.88567 0.91435 0.90727 0.95344 0.93693 0.78003 0.92152 0.91577 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.86 71.98 0.64 -2.48 16 2 C 0.15 4.35 3.04 44.17 0.13 4.48 16 3 H 0.12 2.72 6.90 -2.39 -0.02 2.70 16 4 C 0.15 4.73 4.76 137.98 0.66 5.39 16 5 N -0.33 -13.30 9.14 -50.16 -0.46 -13.76 16 6 N -0.36 -13.51 12.21 -59.99 -0.73 -14.24 16 7 C 0.15 3.92 12.74 180.11 2.30 6.21 16 8 N -0.47 -10.88 3.15 -542.10 -1.71 -12.58 16 9 C 0.06 0.63 11.00 127.77 1.41 2.03 16 10 N -0.49 -19.03 5.40 -862.23 -4.66 -23.69 16 11 C 0.04 1.62 4.89 86.45 0.42 2.04 16 12 C -0.11 -5.77 5.26 31.47 0.17 -5.60 16 13 C 0.24 13.17 0.95 -10.33 -0.01 13.16 16 14 O -0.59 -32.56 13.09 -148.98 -1.95 -34.51 16 15 C -0.56 -32.87 8.14 25.60 0.21 -32.67 16 16 H 0.04 2.44 7.78 -2.91 -0.02 2.42 16 17 C 0.03 1.76 5.28 84.66 0.45 2.20 16 18 N -0.91 -51.97 11.02 21.45 0.24 -51.73 16 19 Si 0.95 45.52 29.54 68.60 2.03 47.54 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 23 C 0.07 3.16 5.41 86.65 0.47 3.63 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 1.36 6.49 -2.39 -0.02 1.35 16 26 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.26 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.93 7.06 -2.39 -0.02 0.91 16 31 H 0.07 2.91 4.74 -2.38 -0.01 2.90 16 32 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.03 1.62 7.84 -2.38 -0.02 1.60 16 34 H 0.04 2.41 7.99 -2.39 -0.02 2.39 16 35 H 0.37 20.98 7.48 -74.06 -0.55 20.42 16 36 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.04 1.83 5.71 -2.39 -0.01 1.82 16 Total: -1.00 -76.98 302.41 0.11 -76.86 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.52 Total: 27.72 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 6.83 Total: -1.61 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -7.32 Total: -116.01 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.95 Total: -34.51 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.98 0.11 -76.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326018464.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.954 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds