Wall clock time and date at job start Mon Mar 30 2020 01:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46970 * 2 1 4 4 C 1.50697 * 109.47097 * 119.99803 * 2 1 3 5 5 N 1.30526 * 126.34871 * 74.99982 * 4 2 1 6 6 N 1.28588 * 109.67514 * 180.02562 * 5 4 2 7 7 C 1.30525 * 109.67304 * 359.97438 * 6 5 4 8 8 N 1.35492 * 126.34521 * 255.00058 * 4 2 1 9 9 C 1.46492 * 126.98451 * 0.25938 * 8 4 2 10 10 N 1.46901 * 109.47150 * 239.99974 * 2 1 3 11 11 C 1.47441 * 111.00193 * 63.56736 * 10 2 1 12 12 C 1.54321 * 107.23166 * 123.25735 * 11 10 2 13 13 C 1.55144 * 103.01851 * 22.28639 * 12 11 10 14 14 O 1.42896 * 110.99077 * 82.47328 * 13 12 11 15 15 C 1.50699 * 110.99285 * 206.25658 * 13 12 11 16 16 H 1.07994 * 120.00635 * 118.54946 * 15 13 12 17 17 C 1.37883 * 119.99744 * 298.54596 * 15 13 12 18 18 N 1.31519 * 119.99741 * 359.97438 * 17 15 13 19 19 Si 1.86793 * 119.99902 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47446 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46982 * 120.00139 * 19 17 15 22 22 H 1.48500 * 109.47328 * 239.99778 * 19 17 15 23 23 C 1.47846 * 110.99896 * 184.41563 * 10 2 1 24 24 H 1.09004 * 109.47124 * 294.35042 * 1 2 3 25 25 H 1.09006 * 109.47129 * 54.35037 * 1 2 3 26 26 H 1.09000 * 109.46940 * 174.34992 * 1 2 3 27 27 H 1.07998 * 126.34023 * 180.02562 * 7 6 5 28 28 H 1.08998 * 109.47334 * 269.71707 * 9 8 4 29 29 H 1.09004 * 109.46808 * 29.70915 * 9 8 4 30 30 H 1.08997 * 109.47359 * 149.70723 * 9 8 4 31 31 H 1.08997 * 109.89233 * 242.66833 * 11 10 2 32 32 H 1.09004 * 109.88835 * 3.86035 * 11 10 2 33 33 H 1.08997 * 110.70433 * 140.67024 * 12 11 10 34 34 H 1.09001 * 110.70742 * 263.90958 * 12 11 10 35 35 H 0.96703 * 114.00065 * 61.45511 * 14 13 12 36 36 H 0.96998 * 119.99661 * 180.02562 * 18 17 15 37 37 H 1.08997 * 110.37073 * 332.46127 * 23 10 2 38 38 H 1.09000 * 110.37032 * 94.80838 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.0337 -1.9998 1.4330 6 7 2.5338 -2.2559 2.5896 7 6 2.8748 -1.1415 3.1774 8 7 2.5663 -0.1289 2.3316 9 6 2.7638 1.3040 2.5635 10 7 2.0197 -0.6925 -1.1994 11 6 1.6182 0.0237 -2.4241 12 6 2.9074 0.3460 -3.2087 13 6 3.9164 -0.7013 -2.6683 14 8 3.7585 -1.9555 -3.3347 15 6 5.3325 -0.2013 -2.7933 16 1 5.9377 -0.0667 -1.9092 17 6 5.8554 0.0844 -4.0368 18 7 5.1185 -0.0800 -5.1136 19 14 7.6109 0.7036 -4.1918 20 1 8.2229 0.8001 -2.8422 21 1 8.3973 -0.2413 -5.0249 22 1 7.6085 2.0436 -4.8317 23 6 3.4938 -0.8049 -1.1816 24 1 -0.3633 0.4237 0.9363 25 1 -0.3634 0.5990 -0.8351 26 1 -0.3633 -1.0227 -0.1012 27 1 3.3204 -1.0446 4.1564 28 1 3.7501 1.5977 2.2042 29 1 1.9995 1.8675 2.0282 30 1 2.6887 1.5132 3.6306 31 1 0.9657 -0.6084 -3.0263 32 1 1.1034 0.9479 -2.1612 33 1 2.7503 0.2133 -4.2791 34 1 3.2485 1.3580 -2.9906 35 1 3.9189 -1.9175 -4.2876 36 1 5.4866 0.1206 -5.9884 37 1 3.9296 0.0113 -0.6055 38 1 3.7960 -1.7668 -0.7674 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326018485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:09 Heat of formation + Delta-G solvation = 43.769860 kcal Electronic energy + Delta-G solvation = -21269.651685 eV Core-core repulsion = 18149.024327 eV Total energy + Delta-G solvation = -3120.627357 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.93695 -38.61627 -35.45475 -34.84031 -32.28843 -32.11464 -29.60009 -28.42849 -27.75535 -27.58703 -24.46861 -23.68325 -22.18021 -20.77940 -19.51787 -19.38616 -17.28776 -16.86760 -16.25749 -15.64471 -15.13100 -14.88551 -14.70362 -14.14888 -13.68356 -13.60203 -13.30334 -13.02610 -12.75051 -12.14295 -11.91386 -11.73594 -11.49789 -11.33297 -11.22781 -11.07843 -10.92892 -10.73953 -10.41610 -10.34183 -10.09446 -10.07662 -9.90721 -9.19027 -8.97926 -8.60907 -8.06362 -7.64067 -6.22444 -4.30603 1.94598 2.53018 3.15084 3.18449 3.27646 3.31244 4.25553 4.36278 4.39321 4.53830 4.68893 4.87039 5.04998 5.08949 5.19530 5.28733 5.56884 5.61100 5.70619 5.83548 5.92204 5.97566 6.06559 6.13782 6.28079 6.38996 6.43223 6.68094 6.88128 6.94100 7.06573 7.39258 7.47856 7.59743 7.68058 7.81008 8.16578 8.71594 9.00251 9.38297 9.55716 10.84484 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.023070 B = 0.006081 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.395790 B = 4603.279117 C = 5063.620681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.049 0.951 4 C 0.191 3.809 5 N -0.262 5.262 6 N -0.301 5.301 7 C 0.137 3.863 8 N -0.480 5.480 9 C 0.072 3.928 10 N -0.506 5.506 11 C 0.044 3.956 12 C -0.145 4.145 13 C 0.253 3.747 14 O -0.575 6.575 15 C -0.535 4.535 16 H 0.058 0.942 17 C 0.072 3.928 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.283 1.283 23 C 0.067 3.933 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.215 0.785 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.376 0.624 36 H 0.266 0.734 37 H 0.036 0.964 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 7.138 11.932 15.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.053 3.947 3 H 0.067 0.933 4 C -0.076 4.076 5 N -0.102 5.102 6 N -0.140 5.140 7 C -0.150 4.150 8 N -0.172 5.172 9 C -0.072 4.072 10 N -0.231 5.231 11 C -0.083 4.083 12 C -0.184 4.184 13 C 0.212 3.788 14 O -0.383 6.383 15 C -0.574 4.574 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.209 1.209 23 C -0.060 4.060 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.231 0.769 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.225 0.775 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.165 4.988 12.142 14.955 hybrid contribution 1.858 2.959 -0.300 3.507 sum -5.307 7.948 11.842 15.217 Atomic orbital electron populations 1.21835 0.92573 1.03951 1.01206 1.20056 0.95870 0.93105 0.85661 0.93288 1.24758 1.00707 0.91105 0.91069 1.74369 1.16676 1.10629 1.08508 1.74308 1.14254 1.23001 1.02478 1.26341 1.05324 0.83883 0.99465 1.46215 1.46806 1.09198 1.15007 1.22092 1.04097 0.77150 1.03837 1.63657 1.12776 1.47292 0.99384 1.22900 0.98977 0.95395 0.91023 1.23279 0.94055 1.00207 1.00871 1.19511 0.91871 0.81165 0.86228 1.86185 1.93218 1.33251 1.25637 1.21560 0.98266 1.44442 0.93116 0.92337 1.24990 0.97983 0.94386 0.95675 1.69747 1.36447 1.48856 0.98212 0.86444 0.84365 0.78394 0.78225 1.19800 1.20682 1.20904 1.22924 0.84609 0.99877 0.98612 0.92946 0.91403 0.90490 0.76899 0.89830 0.89237 0.89048 0.91017 0.94282 0.90167 0.92696 0.77490 0.92409 0.94616 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.01 37.16 0.33 -1.49 16 2 C 0.16 2.63 1.93 -68.86 -0.13 2.50 16 3 H 0.05 0.72 7.22 -51.93 -0.37 0.34 16 4 C 0.19 3.20 5.69 -154.98 -0.88 2.31 16 5 N -0.26 -5.21 12.21 32.80 0.40 -4.81 16 6 N -0.30 -5.44 12.21 29.69 0.36 -5.07 16 7 C 0.14 1.81 12.74 -89.94 -1.15 0.66 16 8 N -0.48 -6.23 3.15 -122.69 -0.39 -6.61 16 9 C 0.07 0.56 10.84 59.84 0.65 1.21 16 10 N -0.51 -10.08 5.02 -224.68 -1.13 -11.20 16 11 C 0.04 0.84 6.23 -2.84 -0.02 0.83 16 12 C -0.14 -3.28 5.38 -24.91 -0.13 -3.41 16 13 C 0.25 6.39 0.87 -89.63 -0.08 6.31 16 14 O -0.58 -15.58 13.16 -35.23 -0.46 -16.05 16 15 C -0.54 -14.51 8.27 -34.44 -0.28 -14.79 16 16 H 0.06 1.60 7.79 -52.49 -0.41 1.19 16 17 C 0.07 1.91 5.29 -17.82 -0.09 1.82 16 18 N -0.89 -23.79 10.75 55.43 0.60 -23.20 16 19 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.07 1.53 4.93 -2.30 -0.01 1.52 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.81 6.89 -51.93 -0.36 0.45 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.21 1.71 8.06 -52.49 -0.42 1.28 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.61 7.46 -51.93 -0.39 0.22 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.04 0.63 6.58 -51.93 -0.34 0.29 16 33 H 0.08 1.92 7.54 -51.93 -0.39 1.53 16 34 H 0.05 1.25 8.03 -51.93 -0.42 0.83 16 35 H 0.38 10.10 7.56 45.56 0.34 10.45 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 37 H 0.04 0.79 7.61 -51.93 -0.40 0.40 16 38 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -32.65 310.41 -7.58 -40.23 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.82 Total: 8.94 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.80 Total: -2.54 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.16 Total: -50.89 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.46 Total: -16.05 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.65 -7.58 -40.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326018485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.000 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds