Wall clock time and date at job start Mon Mar 30 2020 01:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47486 * 2 1 4 4 H 1.09001 * 109.46600 * 304.24505 * 3 2 1 5 5 C 1.50699 * 109.47246 * 184.24613 * 3 2 1 6 6 H 1.08002 * 120.00051 * 239.99595 * 5 3 2 7 7 C 1.37880 * 119.99975 * 59.99459 * 5 3 2 8 8 N 1.31519 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00051 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47073 * 90.00186 * 9 7 5 11 11 H 1.48501 * 109.47368 * 209.99996 * 9 7 5 12 12 H 1.48507 * 109.47055 * 330.00466 * 9 7 5 13 13 N 1.46896 * 109.47400 * 64.24532 * 3 2 1 14 14 C 1.46907 * 110.99971 * 205.87452 * 13 3 2 15 15 C 1.50700 * 109.46895 * 174.80830 * 14 13 3 16 16 N 1.30950 * 126.48659 * 269.67871 * 15 14 13 17 17 N 1.29028 * 109.76288 * 180.23058 * 16 15 14 18 18 C 1.29521 * 109.45572 * 359.97438 * 17 16 15 19 19 N 1.34320 * 126.48596 * 90.00305 * 15 14 13 20 20 C 1.46329 * 130.08978 * 359.87907 * 19 15 14 21 21 C 1.53521 * 108.05399 * 163.71220 * 20 19 15 22 22 O 1.43024 * 109.76137 * 48.20580 * 21 20 19 23 23 C 1.43521 * 114.13070 * 289.94844 * 22 21 20 24 24 H 1.08993 * 109.47025 * 174.90320 * 1 2 3 25 25 H 1.09002 * 109.46867 * 294.90490 * 1 2 3 26 26 H 1.09001 * 109.46701 * 54.90154 * 1 2 3 27 27 H 1.09004 * 109.47129 * 239.99162 * 2 1 3 28 28 H 1.09008 * 109.46755 * 119.99595 * 2 1 3 29 29 H 0.97004 * 119.99396 * 179.97438 * 8 7 5 30 30 H 1.00891 * 111.00048 * 81.91881 * 13 3 2 31 31 H 1.08994 * 109.47136 * 54.80880 * 14 13 3 32 32 H 1.09002 * 109.46769 * 294.80990 * 14 13 3 33 33 H 1.08999 * 109.74087 * 283.35236 * 20 19 15 34 34 H 1.09002 * 109.74270 * 44.06969 * 20 19 15 35 35 H 1.08999 * 109.41853 * 168.29107 * 21 20 19 36 36 H 1.08994 * 109.42185 * 288.16940 * 21 20 19 37 37 H 1.09007 * 109.80823 * 169.06076 * 23 22 21 38 38 H 1.09000 * 109.81462 * 289.95683 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6160 1.9777 -0.8495 5 6 3.5434 1.4437 -0.1052 6 1 4.1391 1.8917 0.6764 7 6 4.1584 0.8728 -1.1993 8 7 3.4330 0.3277 -2.1513 9 14 6.0218 0.8750 -1.3300 10 1 6.5639 -0.3537 -0.6962 11 1 6.4176 0.9096 -2.7609 12 1 6.5653 2.0706 -0.6369 13 7 1.6360 2.1048 1.2474 14 6 1.5394 3.5591 1.0638 15 6 1.0016 4.1896 2.3225 16 7 -0.2576 4.4096 2.6066 17 7 -0.3522 4.9683 3.7658 18 6 0.8319 5.1266 4.2663 19 7 1.7236 4.6378 3.3627 20 6 3.1719 4.6439 3.5717 21 6 3.4837 5.6211 4.7139 22 8 2.6147 5.3646 5.8206 23 6 1.2453 5.7252 5.5872 24 1 -0.3633 -1.0235 -0.0913 25 1 -0.3633 0.4328 0.9321 26 1 -0.3633 0.5909 -0.8408 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8657 -0.0736 -2.9212 30 1 2.2687 1.8765 1.9993 31 1 0.8682 3.7767 0.2331 32 1 2.5279 3.9645 0.8480 33 1 3.5092 3.6430 3.8409 34 1 3.6740 4.9698 2.6607 35 1 4.5192 5.4921 5.0287 36 1 3.3351 6.6436 4.3668 37 1 0.6177 5.3282 6.3852 38 1 1.1507 6.8103 5.5469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326728799.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:30 Heat of formation + Delta-G solvation = 35.146773 kcal Electronic energy + Delta-G solvation = -20619.044614 eV Core-core repulsion = 17498.043332 eV Total energy + Delta-G solvation = -3121.001283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 5.11 seconds Orbital eigenvalues (eV) -43.18646 -38.81518 -36.47860 -34.78172 -33.00322 -31.65113 -31.00682 -29.95660 -27.31749 -26.23504 -24.76092 -24.11623 -22.56059 -21.04608 -20.17508 -19.59845 -17.65300 -16.91986 -16.83617 -16.05404 -15.60089 -15.38133 -14.92259 -14.41831 -14.28986 -13.90843 -13.57650 -13.31182 -12.77025 -12.38709 -12.13812 -11.96650 -11.62938 -11.32431 -11.29658 -11.19613 -11.03250 -10.74225 -10.50222 -10.30949 -10.21523 -10.04212 -9.70357 -9.64073 -9.19088 -8.88537 -8.49920 -7.48046 -6.11948 -4.26330 1.88252 2.38819 3.00156 3.17246 3.24777 3.25624 3.29858 3.95853 4.12622 4.27317 4.47564 4.60705 4.76295 4.94368 5.04115 5.13778 5.14789 5.27959 5.29552 5.46472 5.82742 6.03014 6.16728 6.27593 6.40097 6.47286 6.51198 6.70927 6.91751 7.03427 7.18385 7.31191 7.47786 7.65882 7.91206 7.97115 8.15998 8.44289 8.83755 8.89696 9.41775 10.88500 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.005520 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.037224 B = 5071.135945 C = 6103.679004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.037 0.963 5 C -0.552 4.552 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.880 5.880 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.677 5.677 14 C 0.150 3.850 15 C 0.217 3.783 16 N -0.290 5.290 17 N -0.280 5.280 18 C 0.115 3.885 19 N -0.468 5.468 20 C 0.069 3.931 21 C 0.049 3.951 22 O -0.372 6.372 23 C 0.155 3.845 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.038 0.962 27 H 0.092 0.908 28 H 0.030 0.970 29 H 0.263 0.737 30 H 0.326 0.674 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 10.032 11.529 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.055 0.945 5 C -0.591 4.591 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.307 5.307 14 C 0.018 3.982 15 C -0.051 4.051 16 N -0.130 5.130 17 N -0.120 5.120 18 C -0.154 4.154 19 N -0.161 5.161 20 C -0.055 4.055 21 C -0.028 4.028 22 O -0.288 6.288 23 C 0.077 3.923 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.084 0.916 37 H 0.145 0.855 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.348 9.776 11.240 14.900 hybrid contribution 3.391 0.146 -0.400 3.418 sum 3.043 9.922 10.840 15.007 Atomic orbital electron populations 1.21698 0.98688 0.98425 1.00694 1.21491 0.92353 0.98735 1.01735 1.19218 0.92843 0.91430 0.85513 0.94471 1.21780 0.92400 1.38934 1.06027 0.92994 1.24922 0.98040 0.94799 0.95557 1.69877 1.35008 1.37413 1.09442 0.86643 0.85852 0.78358 0.77364 1.20567 1.21085 1.20177 1.60876 1.55586 1.03829 1.10455 1.20203 0.99040 0.90398 0.88608 1.25105 0.88251 0.99200 0.92537 1.74628 1.14794 1.15959 1.07633 1.73910 1.18832 1.15110 1.04182 1.25260 0.87387 1.05620 0.97092 1.45943 1.08851 1.45943 1.15389 1.22772 0.77594 1.03633 1.01475 1.23021 0.96051 0.97525 0.86201 1.88163 1.17696 1.85715 1.37253 1.21174 0.82403 0.98847 0.89923 0.95592 0.93322 0.94258 0.88993 0.95096 0.92663 0.85766 0.88214 0.93399 0.88030 0.87429 0.85965 0.91560 0.85451 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.73 37.16 0.36 -2.53 16 2 C -0.10 -2.45 5.45 -26.73 -0.15 -2.60 16 3 C 0.22 5.11 1.98 -68.87 -0.14 4.97 16 4 H 0.04 0.96 7.70 -51.93 -0.40 0.56 16 5 C -0.55 -13.84 8.47 -34.44 -0.29 -14.14 16 6 H 0.05 1.26 7.73 -52.49 -0.41 0.86 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.79 11.30 55.43 0.63 -23.17 16 9 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 13 N -0.68 -13.77 5.72 -109.22 -0.62 -14.40 16 14 C 0.15 2.72 5.94 -4.97 -0.03 2.69 16 15 C 0.22 3.83 7.65 -155.69 -1.19 2.64 16 16 N -0.29 -5.75 12.24 32.65 0.40 -5.35 16 17 N -0.28 -5.08 12.20 32.77 0.40 -4.68 16 18 C 0.11 1.69 7.90 -155.27 -1.23 0.46 16 19 N -0.47 -6.88 3.12 -110.75 -0.35 -7.22 16 20 C 0.07 0.73 7.14 -3.86 -0.03 0.70 16 21 C 0.05 0.40 6.82 37.43 0.26 0.65 16 22 O -0.37 -3.78 10.78 -35.23 -0.38 -4.16 16 23 C 0.16 1.56 7.29 36.06 0.26 1.82 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 1.01 7.88 -51.93 -0.41 0.61 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 28 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.33 6.52 8.45 -39.30 -0.33 6.19 16 31 H 0.10 1.88 7.92 -51.93 -0.41 1.47 16 32 H 0.05 0.84 7.95 -51.93 -0.41 0.42 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.11 1.02 8.02 -51.93 -0.42 0.60 16 35 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.13 1.09 8.14 -51.92 -0.42 0.67 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 314.91 15.07 4.75 4.75 Total: -1.00 -30.53 314.91 -8.07 -38.61 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.61 Total: 4.33 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -2.26 Total: -3.60 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.45 Total: -54.82 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.38 Total: -4.16 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.53 -8.07 -38.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326728799.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.754 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.11 seconds