Wall clock time and date at job start Mon Mar 30 2020 00:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30853 * 125.90123 * 265.03044 * 4 2 1 6 6 C 1.33631 * 109.78199 * 179.97438 * 5 4 2 7 7 N 1.39860 * 125.60544 * 180.02562 * 6 5 4 8 8 C 1.34781 * 120.00431 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99611 * 0.02562 * 8 7 6 10 10 C 1.50695 * 120.00498 * 179.97438 * 8 7 6 11 11 C 1.52997 * 109.47501 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47337 * 180.02562 * 11 10 8 13 13 C 1.50702 * 109.47192 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99623 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99870 * 179.97438 * 13 12 11 16 16 N 1.31504 * 119.99983 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99735 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47309 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46990 * 119.99975 * 17 15 13 20 20 H 1.48492 * 109.47273 * 240.00200 * 17 15 13 21 21 N 1.31172 * 108.79432 * 359.97438 * 6 5 4 22 22 N 1.34378 * 125.89679 * 84.71520 * 4 2 1 23 23 H 0.97004 * 126.77005 * 0.02562 * 22 4 2 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 0.97000 * 120.00132 * 359.97438 * 7 6 5 32 32 H 1.09001 * 109.47237 * 300.00439 * 10 8 7 33 33 H 1.09009 * 109.46817 * 59.99955 * 10 8 7 34 34 H 1.09001 * 109.47209 * 300.00427 * 11 10 8 35 35 H 1.08995 * 109.46954 * 59.99991 * 11 10 8 36 36 H 1.09001 * 109.47021 * 300.00177 * 12 11 10 37 37 H 1.08995 * 109.47404 * 59.99902 * 12 11 10 38 38 H 0.97007 * 120.00081 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 2.3748 -1.9713 -1.3023 6 6 2.7719 -2.2620 -2.5447 7 7 3.2081 -3.5147 -2.9880 8 6 3.5838 -3.6821 -4.2715 9 8 3.5441 -2.7462 -5.0420 10 6 4.0543 -5.0317 -4.7491 11 6 4.4185 -4.9493 -6.2328 12 6 4.8955 -6.3197 -6.7178 13 6 5.2536 -6.2387 -8.1794 14 1 5.1515 -5.3032 -8.7092 15 6 5.7125 -7.3586 -8.8398 16 7 5.8373 -8.4976 -8.1945 17 14 6.1556 -7.2583 -10.6517 18 1 5.9273 -5.8750 -11.1414 19 1 7.5853 -7.6171 -10.8322 20 1 5.3072 -8.2028 -11.4219 21 7 2.6845 -1.1796 -3.2804 22 7 2.2005 -0.1599 -2.4446 23 1 2.0241 0.7607 -2.6943 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 3.2402 -4.2631 -2.3718 32 1 4.9310 -5.3345 -4.1764 33 1 3.2589 -5.7640 -4.6099 34 1 3.5420 -4.6464 -6.8057 35 1 5.2140 -4.2173 -6.3715 36 1 5.7718 -6.6230 -6.1449 37 1 4.0998 -7.0515 -6.5791 38 1 6.1598 -9.2856 -8.6592 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346452214.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:41 Heat of formation + Delta-G solvation = 30.477997 kcal Electronic energy + Delta-G solvation = -19171.355530 eV Core-core repulsion = 16050.151794 eV Total energy + Delta-G solvation = -3121.203736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37484 -39.56126 -36.26929 -34.65158 -34.18394 -32.33230 -32.00605 -30.06885 -27.93559 -27.71232 -24.59912 -23.93257 -22.09041 -20.78918 -20.15630 -19.72511 -18.22753 -16.81106 -16.50366 -16.17387 -16.03670 -15.45402 -15.15096 -14.63714 -14.40358 -13.74150 -13.68746 -13.29390 -12.79927 -12.55284 -12.27972 -12.01728 -11.84671 -11.81681 -11.48795 -11.44384 -11.11415 -10.81323 -10.62490 -10.50834 -10.21488 -9.99240 -9.77925 -9.67713 -9.31452 -9.02028 -8.79844 -8.31086 -5.96521 -3.97703 1.46256 2.26146 2.39749 2.81090 3.23486 3.35059 3.42307 3.48248 3.87526 4.21500 4.47204 4.50522 4.66551 4.75569 4.99935 5.06630 5.19783 5.25153 5.39788 5.40758 5.48219 5.59161 5.66876 5.66908 5.69194 6.09411 6.20274 6.60143 6.70981 6.80526 6.91159 7.15311 7.16826 7.72029 7.84161 8.04039 8.05937 8.29481 8.47949 9.09526 9.66270 11.15023 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.064921 B = 0.002701 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.187768 B =10364.253098 C =10620.952950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.017 4.017 3 C -0.155 4.155 4 C 0.303 3.697 5 N -0.555 5.555 6 C 0.445 3.555 7 N -0.633 5.633 8 C 0.509 3.491 9 O -0.486 6.486 10 C -0.130 4.130 11 C -0.096 4.096 12 C 0.020 3.980 13 C -0.517 4.517 14 H 0.057 0.943 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 N -0.289 5.289 22 N -0.481 5.481 23 H 0.440 0.560 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.423 0.577 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.024 17.184 20.683 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 C -0.213 4.213 4 C 0.023 3.977 5 N -0.289 5.289 6 C 0.075 3.925 7 N -0.288 5.288 8 C 0.297 3.703 9 O -0.353 6.353 10 C -0.170 4.170 11 C -0.134 4.134 12 C -0.017 4.017 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 N -0.125 5.125 22 N -0.200 5.200 23 H 0.285 0.715 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.261 0.739 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.748 17.330 19.489 27.842 hybrid contribution 0.134 0.146 -0.643 0.672 sum -9.614 17.476 18.847 27.442 Atomic orbital electron populations 1.21858 0.92549 1.03272 1.02728 1.19828 0.96697 0.95187 0.92123 1.21937 1.02021 0.94189 1.03112 1.24071 0.95334 0.88933 0.89320 1.70135 1.25120 1.13738 1.19858 1.20588 0.96315 0.88146 0.87435 1.43151 1.65539 1.07168 1.12968 1.21727 0.76287 0.92647 0.79684 1.90789 1.49302 1.42377 1.52876 1.21868 1.02654 0.91292 1.01232 1.21493 1.01064 1.01241 0.89626 1.19138 0.96325 0.90240 0.96000 1.21302 1.43088 0.95839 0.95304 0.92504 1.25019 0.95798 0.95484 0.98255 1.69968 1.47170 1.00357 1.36208 0.86535 0.77988 0.78117 0.85395 1.19695 1.21051 1.21045 1.78868 1.25179 0.95615 1.12845 1.47978 1.51816 1.12955 1.07272 0.71458 0.91500 0.92374 0.90867 0.87185 0.90479 0.91697 0.92395 0.73874 0.88649 0.88651 0.92501 0.92497 0.96462 0.96460 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.18 37.16 0.34 -0.35 16 2 C -0.02 -0.10 3.39 -91.77 -0.31 -0.41 16 3 C -0.15 -0.57 8.95 37.16 0.33 -0.24 16 4 C 0.30 3.12 6.94 -155.73 -1.08 2.04 16 5 N -0.56 -7.42 11.21 -11.07 -0.12 -7.55 16 6 C 0.44 6.96 8.83 -320.86 -2.83 4.13 16 7 N -0.63 -9.09 5.44 -12.82 -0.07 -9.16 16 8 C 0.51 8.74 7.80 -10.99 -0.09 8.66 16 9 O -0.49 -10.33 14.67 5.55 0.08 -10.25 16 10 C -0.13 -2.14 5.70 -27.89 -0.16 -2.30 16 11 C -0.10 -2.08 4.44 -26.73 -0.12 -2.20 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.17 13.28 55.43 0.74 -26.43 16 17 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 N -0.29 -4.76 10.98 30.03 0.33 -4.43 16 22 N -0.48 -5.36 7.20 32.61 0.23 -5.13 16 23 H 0.44 3.33 8.20 -182.33 -1.50 1.83 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.17 7.46 -51.93 -0.39 -0.22 16 31 H 0.42 4.56 8.82 -40.82 -0.36 4.20 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 34 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -36.99 326.54 -10.23 -47.21 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.85 Total: -2.23 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.46 Total: -4.13 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 1.11 Total: -52.69 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.99 -10.23 -47.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346452214.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.692 kcal (2) G-P(sol) polarization free energy of solvation -36.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds