Wall clock time and date at job start Mon Mar 30 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52989 * 109.47177 * 2 1 4 4 C 1.50695 * 109.46804 * 120.00072 * 2 1 3 5 5 N 1.30712 * 125.52725 * 299.97254 * 4 2 1 6 6 N 1.40451 * 106.79409 * 180.02562 * 5 4 2 7 7 H 0.96996 * 126.82309 * 180.02562 * 6 5 4 8 8 C 1.34425 * 106.35294 * 359.97438 * 6 5 4 9 9 C 1.50703 * 125.96097 * 179.97438 * 8 6 5 10 10 N 1.46899 * 109.47107 * 95.02460 * 9 8 6 11 11 C 1.47488 * 110.99898 * 74.02976 * 10 9 8 12 12 C 1.53514 * 87.93091 * 138.70496 * 11 10 9 13 13 O 1.42892 * 114.17423 * 87.62542 * 12 11 10 14 14 C 1.50703 * 114.16729 * 220.32979 * 12 11 10 15 15 H 1.08004 * 119.99996 * 93.83644 * 14 12 11 16 16 C 1.37870 * 119.99807 * 273.83838 * 14 12 11 17 17 N 1.31509 * 120.00270 * 0.02562 * 16 14 12 18 18 Si 1.86810 * 119.99763 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.46902 * 90.00100 * 18 16 14 20 20 H 1.48505 * 109.46934 * 210.00023 * 18 16 14 21 21 H 1.48498 * 109.47142 * 330.00084 * 18 16 14 22 22 C 1.47481 * 111.00017 * 169.99785 * 10 9 8 23 23 N 1.30832 * 108.07809 * 0.24395 * 8 6 5 24 24 H 1.08998 * 109.47047 * 300.00274 * 1 2 3 25 25 H 1.08999 * 109.46734 * 60.00260 * 1 2 3 26 26 H 1.09000 * 109.46865 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47047 * 239.99726 * 2 1 3 28 28 H 1.09005 * 109.47161 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47478 * 299.99638 * 3 2 1 30 30 H 1.08998 * 109.47355 * 59.99915 * 3 2 1 31 31 H 1.09002 * 109.47152 * 335.02548 * 9 8 6 32 32 H 1.09001 * 109.46980 * 215.02648 * 9 8 6 33 33 H 1.08997 * 113.47402 * 253.47029 * 11 10 9 34 34 H 1.09004 * 113.47408 * 23.93601 * 11 10 9 35 35 H 0.96696 * 114.00502 * 86.15038 * 13 12 11 36 36 H 0.97009 * 120.00245 * 180.02562 * 17 16 14 37 37 H 1.09003 * 113.47525 * 336.07029 * 22 10 9 38 38 H 1.09001 * 113.47256 * 106.53396 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7844 -0.3590 2.4648 6 7 2.4406 -1.2865 3.2904 7 1 2.4486 -1.2978 4.2603 8 6 3.0544 -2.1561 2.4694 9 6 3.8895 -3.3363 2.8948 10 7 3.0541 -4.5443 2.9181 11 6 2.7631 -5.0122 1.5500 12 6 2.9918 -6.4451 2.0512 13 8 1.8260 -7.0686 2.5933 14 6 3.7456 -7.3234 1.0860 15 1 4.8180 -7.4211 1.1692 16 6 3.0663 -8.0020 0.0967 17 7 1.7606 -7.8826 -0.0050 18 14 4.0006 -9.0912 -1.0993 19 1 4.0813 -10.4700 -0.5538 20 1 3.2916 -9.1158 -2.4040 21 1 5.3716 -8.5537 -1.2910 22 6 3.8788 -5.7540 3.0963 23 7 2.8052 -1.7958 1.2366 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 4.2941 -3.1551 3.8906 32 1 4.7089 -3.4747 2.1893 33 1 1.7374 -4.8211 1.2348 34 1 3.4985 -4.6869 0.8142 35 1 1.2691 -7.5030 1.9330 36 1 1.2825 -8.3605 -0.7009 37 1 4.9120 -5.6265 2.7732 38 1 3.7985 -6.1914 4.0914 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473414319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:58 Heat of formation + Delta-G solvation = 63.750334 kcal Electronic energy + Delta-G solvation = -20398.561510 eV Core-core repulsion = 17278.800571 eV Total energy + Delta-G solvation = -3119.760939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.98111 -39.17937 -35.75932 -34.43356 -32.08428 -31.98678 -31.41489 -28.51234 -27.19271 -26.00117 -24.93365 -23.68977 -22.80803 -20.52217 -19.48690 -18.64985 -17.78694 -17.26052 -15.65325 -15.15588 -14.92691 -14.74655 -14.67125 -14.34014 -13.93112 -13.87290 -13.08232 -12.81294 -12.23828 -12.21088 -12.01776 -11.84442 -11.49471 -11.43788 -11.28320 -11.10727 -10.96189 -10.85206 -10.74561 -10.35026 -10.03051 -9.85812 -9.78224 -9.52365 -9.15762 -8.64915 -8.28154 -7.97040 -6.26985 -4.36782 1.76910 2.79682 3.07368 3.20898 3.28331 3.30946 4.04561 4.25823 4.64587 4.80377 4.85144 5.03283 5.08995 5.11935 5.31858 5.55496 5.58442 5.65643 5.78576 5.83120 5.84592 5.91019 5.97497 6.19996 6.23117 6.25052 6.38195 6.46120 6.61420 6.64496 6.98471 7.11215 7.22784 7.32918 7.76197 7.80967 7.97596 8.32973 8.64976 9.33462 9.65991 10.79453 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.004904 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.868059 B = 5708.305418 C = 6327.309377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.001 4.001 3 C -0.140 4.140 4 C 0.232 3.768 5 N -0.321 5.321 6 N -0.478 5.478 7 H 0.438 0.562 8 C 0.310 3.690 9 C 0.089 3.911 10 N -0.471 5.471 11 C -0.009 4.009 12 C 0.246 3.754 13 O -0.571 6.571 14 C -0.535 4.535 15 H 0.067 0.933 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.006 3.994 23 N -0.531 5.531 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.391 0.609 36 H 0.272 0.728 37 H 0.069 0.931 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 13.171 1.945 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 C -0.199 4.199 4 C -0.051 4.051 5 N -0.151 5.151 6 N -0.195 5.195 7 H 0.283 0.717 8 C 0.031 3.969 9 C -0.043 4.043 10 N -0.195 5.195 11 C -0.138 4.138 12 C 0.204 3.796 13 O -0.384 6.384 14 C -0.573 4.573 15 H 0.086 0.914 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.197 1.197 22 C -0.123 4.123 23 N -0.260 5.260 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.247 0.753 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.909 13.994 2.721 14.285 hybrid contribution 0.984 -0.935 -0.942 1.652 sum 1.893 13.059 1.779 13.315 Atomic orbital electron populations 1.21816 0.93375 1.02608 1.02277 1.19496 0.96067 0.94950 0.91734 1.21806 1.01185 0.94511 1.02365 1.24152 0.94980 0.92494 0.93487 1.77836 1.20524 1.14430 1.02261 1.47928 1.39522 1.21822 1.10269 0.71663 1.24201 0.94015 0.92801 0.85877 1.21258 0.93606 0.88023 1.01364 1.69138 1.28452 0.98839 1.23036 1.24686 1.01193 0.99428 0.88480 1.19378 0.83974 0.87910 0.88297 1.86011 1.37673 1.74373 1.40331 1.21543 0.94416 1.28260 1.13120 0.91447 1.25054 0.95008 0.95845 0.97107 1.69291 1.06998 1.42809 1.34663 0.86390 0.79893 0.80583 0.79965 1.20343 1.20930 1.19650 1.24121 0.96316 0.90313 1.01532 1.70425 1.20428 1.14694 1.20460 0.92072 0.91669 0.92215 0.88463 0.92607 0.91668 0.92068 0.89294 0.90518 0.91560 0.91347 0.75314 0.91782 0.91258 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.18 37.16 0.34 -1.33 16 2 C 0.00 -0.02 3.39 -91.78 -0.31 -0.33 16 3 C -0.14 -1.48 9.17 37.15 0.34 -1.14 16 4 C 0.23 3.83 6.65 -156.85 -1.04 2.78 16 5 N -0.32 -5.20 12.80 32.42 0.41 -4.78 16 6 N -0.48 -7.14 7.45 32.62 0.24 -6.90 16 7 H 0.44 5.01 8.96 -182.33 -1.63 3.38 16 8 C 0.31 5.24 7.38 -155.70 -1.15 4.09 16 9 C 0.09 1.42 5.45 -4.98 -0.03 1.40 16 10 N -0.47 -9.47 6.40 -246.05 -1.58 -11.04 16 11 C -0.01 -0.21 6.71 -7.54 -0.05 -0.26 16 12 C 0.25 6.16 1.57 -91.24 -0.14 6.01 16 13 O -0.57 -15.44 13.54 -35.23 -0.48 -15.91 16 14 C -0.54 -14.06 8.68 -34.44 -0.30 -14.36 16 15 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 16 C 0.07 1.89 5.40 -17.82 -0.10 1.79 16 17 N -0.90 -24.14 11.02 55.43 0.61 -23.53 16 18 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 22 C 0.01 0.12 7.12 -7.54 -0.05 0.06 16 23 N -0.53 -9.84 11.17 -8.16 -0.09 -9.93 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.23 7.56 -51.93 -0.39 0.84 16 33 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.07 1.61 7.66 -51.93 -0.40 1.21 16 35 H 0.39 10.82 6.34 45.56 0.29 11.11 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.07 1.30 7.72 -51.93 -0.40 0.90 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -30.12 319.73 -9.88 -40.00 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -6.31 Total: 13.32 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.27 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.40 Total: -56.17 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.48 Total: -15.91 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.12 -9.88 -40.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473414319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.749 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds