Wall clock time and date at job start Mon Mar 30 2020 00:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.35036 * 126.38698 * 2 1 4 4 H 0.97000 * 124.88431 * 359.97438 * 3 2 1 5 5 N 1.28465 * 110.22937 * 180.02562 * 3 2 1 6 6 C 1.31814 * 110.07701 * 359.97438 * 5 3 2 7 7 C 1.47706 * 126.52223 * 180.02562 * 6 5 3 8 8 O 1.21571 * 119.99862 * 180.02562 * 7 6 5 9 9 N 1.34774 * 119.99728 * 0.02562 * 7 6 5 10 10 C 1.46506 * 120.00072 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47322 * 64.99970 * 11 10 9 13 13 C 1.53001 * 109.46997 * 185.00271 * 11 10 9 14 14 N 1.46502 * 109.47004 * 304.99911 * 11 10 9 15 15 C 1.36937 * 120.00242 * 155.00151 * 14 11 10 16 16 H 1.08000 * 119.99698 * 0.02562 * 15 14 11 17 17 C 1.38808 * 120.00426 * 179.97438 * 15 14 11 18 18 N 1.31619 * 120.00011 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00285 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.46907 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47423 * 119.99977 * 19 17 15 22 22 H 1.48502 * 109.47007 * 240.00346 * 19 17 15 23 23 C 1.35368 * 126.38273 * 180.33020 * 2 1 3 24 24 C 1.50697 * 127.24799 * 359.97438 * 23 2 1 25 25 H 1.08997 * 109.47764 * 89.97085 * 1 2 3 26 26 H 1.08999 * 109.47282 * 209.97383 * 1 2 3 27 27 H 1.09007 * 109.46959 * 329.97165 * 1 2 3 28 28 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 30 30 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 31 31 H 1.09002 * 109.46801 * 299.99817 * 13 11 10 32 32 H 1.08993 * 109.47331 * 59.99704 * 13 11 10 33 33 H 1.09000 * 109.46933 * 179.97438 * 13 11 10 34 34 H 0.97004 * 119.99954 * 335.00241 * 14 11 10 35 35 H 0.96993 * 120.00405 * 179.97438 * 18 17 15 36 36 H 1.09004 * 109.47133 * 270.21004 * 24 23 2 37 37 H 1.08994 * 109.47498 * 30.20970 * 24 23 2 38 38 H 1.08997 * 109.47262 * 150.21625 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0871 0.0000 4 1 1.9966 2.0057 -0.0004 5 7 3.5420 0.7296 -0.0005 6 6 3.6321 -0.5855 -0.0004 7 6 4.8764 -1.3813 -0.0003 8 8 4.8211 -2.5958 -0.0006 9 7 6.0729 -0.7611 0.0001 10 6 7.3072 -1.5504 -0.0004 11 6 8.5140 -0.6100 0.0008 12 1 8.5334 -0.0450 0.9327 13 6 9.7996 -1.4299 -0.1255 14 7 8.4125 0.3162 -1.1297 15 6 9.0382 1.5331 -1.0763 16 1 9.6068 1.8099 -0.2008 17 6 8.9424 2.4105 -2.1476 18 7 8.2499 2.0730 -3.2148 19 14 9.7965 4.0702 -2.0750 20 1 10.5035 4.2066 -0.7761 21 1 10.7769 4.1715 -3.1857 22 1 8.7877 5.1521 -2.2049 23 6 2.3100 -1.0898 -0.0063 24 6 1.8853 -2.5357 -0.0141 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5143 28 1 6.1170 0.2079 0.0000 29 1 7.3364 -2.1797 0.8891 30 1 7.3364 -2.1785 -0.8908 31 1 9.8751 -2.1190 0.7157 32 1 9.7801 -1.9948 -1.0574 33 1 10.6593 -0.7599 -0.1251 34 1 7.9020 0.0675 -1.9162 35 1 8.1826 2.6862 -3.9633 36 1 1.7796 -2.8889 1.0117 37 1 0.9306 -2.6312 -0.5313 38 1 2.6384 -3.1328 -0.5281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567004253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:10 Heat of formation + Delta-G solvation = 9.168421 kcal Electronic energy + Delta-G solvation = -20071.058375 eV Core-core repulsion = 16948.930586 eV Total energy + Delta-G solvation = -3122.127788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.69962 -40.43593 -37.90119 -35.26970 -34.40875 -33.80384 -33.16663 -30.59812 -29.35551 -27.47616 -26.97726 -25.75934 -24.38771 -21.73659 -20.98207 -20.84504 -19.34536 -18.54122 -17.87096 -17.10570 -16.97495 -16.69531 -15.99818 -15.44770 -15.30737 -14.76646 -14.61192 -14.03715 -13.86052 -13.81346 -13.66529 -13.62811 -13.35772 -13.07948 -12.99262 -12.92720 -12.81637 -12.49246 -12.14027 -11.76641 -11.71256 -11.64908 -11.10321 -10.95976 -10.40781 -9.97033 -9.61939 -9.02584 -7.91570 -5.20792 0.53296 1.10825 1.48111 1.48539 1.58303 1.92611 2.31228 2.39525 2.57437 3.41794 3.46143 3.79279 3.88934 3.97070 4.08825 4.31318 4.39282 4.40176 4.63686 4.74020 4.80148 4.85102 4.92372 4.95386 5.05374 5.07429 5.12036 5.22141 5.26106 5.39677 5.55685 5.57790 5.60565 6.15748 6.28890 6.50689 6.90032 7.18487 7.35767 8.08436 8.32911 9.31765 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.005071 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.945043 B = 5520.732284 C = 6692.949146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.024 3.976 3 N -0.367 5.367 4 H 0.459 0.541 5 N -0.278 5.278 6 C -0.042 4.042 7 C 0.594 3.406 8 O -0.566 6.566 9 N -0.702 5.702 10 C 0.122 3.878 11 C 0.158 3.842 12 H 0.057 0.943 13 C -0.153 4.153 14 N -0.733 5.733 15 C -0.233 4.233 16 H 0.079 0.921 17 C -0.073 4.073 18 N -0.969 5.969 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.297 1.297 22 H -0.296 1.296 23 C -0.174 4.174 24 C -0.070 4.070 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.410 0.590 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.371 0.629 35 H 0.248 0.752 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.247 -4.564 9.112 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 N -0.084 5.084 4 H 0.307 0.693 5 N -0.115 5.115 6 C -0.201 4.201 7 C 0.379 3.621 8 O -0.445 6.445 9 N -0.352 5.352 10 C -0.002 4.002 11 C 0.050 3.950 12 H 0.075 0.925 13 C -0.213 4.213 14 N -0.374 5.374 15 C -0.365 4.365 16 H 0.097 0.903 17 C -0.265 4.265 18 N -0.620 5.620 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.225 1.225 22 H -0.224 1.224 23 C -0.184 4.184 24 C -0.128 4.128 25 H 0.111 0.889 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.246 0.754 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.457 -4.354 9.213 18.514 hybrid contribution 0.158 1.223 -0.756 1.447 sum -15.299 -3.131 8.457 17.759 Atomic orbital electron populations 1.20535 0.82861 1.05667 1.04721 1.21840 0.97038 0.85595 1.05767 1.43343 1.02124 1.10656 1.52254 0.69300 1.73597 1.03439 1.14841 1.19642 1.21880 0.95349 0.90284 1.12599 1.17209 0.82412 0.86363 0.76071 1.90686 1.87354 1.13630 1.52791 1.45912 1.05114 1.11536 1.72630 1.21683 0.82721 0.93748 1.02058 1.20704 0.92696 0.90260 0.91384 0.92476 1.22214 0.97968 0.99689 1.01433 1.42618 1.61477 1.15899 1.17361 1.19634 1.23454 0.92881 1.00529 0.90341 1.25484 1.02253 1.02207 0.96562 1.69840 1.47294 1.37562 1.07286 0.85134 0.77436 0.80118 0.77423 1.18936 1.22497 1.22391 1.20470 0.89968 0.98302 1.09678 1.20130 1.01695 0.88408 1.02557 0.88932 0.88261 0.88741 0.75364 0.89509 0.92627 0.90552 0.93756 0.93560 0.79676 0.94296 0.91001 0.89200 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.14 71.24 0.72 -0.03 16 2 C 0.02 0.49 7.23 41.40 0.30 0.79 16 3 N -0.37 -8.42 6.83 -47.93 -0.33 -8.75 16 4 H 0.46 6.82 8.96 -219.99 -1.97 4.85 16 5 N -0.28 -9.18 11.92 -48.17 -0.57 -9.75 16 6 C -0.04 -1.46 7.13 42.46 0.30 -1.16 16 7 C 0.59 23.24 7.82 86.75 0.68 23.92 16 8 O -0.57 -23.54 15.12 -3.94 -0.06 -23.60 16 9 N -0.70 -27.22 5.39 -466.09 -2.51 -29.73 16 10 C 0.12 4.42 5.23 86.38 0.45 4.87 16 11 C 0.16 6.13 3.05 44.99 0.14 6.27 16 12 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 13 C -0.15 -5.24 9.49 71.98 0.68 -4.55 16 14 N -0.73 -36.25 4.56 -322.95 -1.47 -37.72 16 15 C -0.23 -12.65 9.93 84.03 0.83 -11.81 16 16 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 17 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 18 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 19 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 C -0.17 -4.85 6.25 -19.72 -0.12 -4.97 16 24 C -0.07 -1.65 9.61 71.24 0.68 -0.97 16 25 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.10 0.73 7.98 -2.39 -0.02 0.71 16 27 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.41 16.99 7.86 -92.71 -0.73 16.26 16 29 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.37 20.35 7.80 -92.71 -0.72 19.63 16 35 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.09 1.49 8.00 -2.39 -0.02 1.47 16 38 H 0.05 1.62 6.72 -2.39 -0.02 1.61 16 Total: -1.00 -72.67 325.82 0.18 -72.49 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -2.33 Total: 39.55 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 5.14 Total: 8.68 kcal Atomic # 7 Polarization: -140.58 SS G_CDS: -4.60 Total: -145.18 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.60 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -72.67 0.18 -72.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567004253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.658 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds