Wall clock time and date at job start Mon Mar 30 2020 01:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21570 * 119.99981 * 359.97438 * 7 6 5 9 9 C 1.47706 * 120.00063 * 179.97438 * 7 6 5 10 10 N 1.31811 * 126.51826 * 359.67960 * 9 7 6 11 11 N 1.28475 * 110.07356 * 179.85893 * 10 9 7 12 12 H 0.96998 * 124.87962 * 180.13056 * 11 10 9 13 13 C 1.35032 * 110.22934 * 0.42064 * 11 10 9 14 14 C 1.35370 * 107.22766 * 359.74641 * 13 11 10 15 15 C 1.50699 * 127.24592 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 17 17 C 1.36943 * 119.99752 * 84.72207 * 16 3 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 3 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 3 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 27 27 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 28 28 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 29 29 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 30 30 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 31 31 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 32 32 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 33 33 H 1.07998 * 126.38362 * 179.72656 * 13 11 10 34 34 H 1.08995 * 109.47423 * 270.02572 * 15 14 13 35 35 H 1.09002 * 109.47039 * 30.03105 * 15 14 13 36 36 H 1.09000 * 109.46836 * 150.02546 * 15 14 13 37 37 H 0.97001 * 120.00384 * 265.00562 * 16 3 2 38 38 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1653 2.1460 0.2578 9 6 5.8881 4.4466 -0.0354 10 7 5.1630 5.5302 -0.2284 11 7 5.9224 6.5651 -0.2825 12 1 5.6121 7.4744 -0.4158 13 6 7.2149 6.2041 -0.1333 14 6 7.2398 4.8601 0.0273 15 6 8.4521 3.9881 0.2296 16 7 1.6525 2.0975 -1.2518 17 6 0.4135 2.6685 -1.3707 18 1 -0.2763 2.6399 -0.5402 19 6 0.0441 3.2841 -2.5588 20 7 0.8846 3.3185 -3.5712 21 14 -1.6456 4.0637 -2.7208 22 1 -1.5781 5.4847 -2.2947 23 1 -2.0903 3.9919 -4.1358 24 1 -2.6118 3.3344 -1.8607 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8498 1.0377 1.0961 31 1 3.9954 0.8311 -0.6659 32 1 3.4410 3.5482 -0.1315 33 1 8.0695 6.8643 -0.1410 34 1 8.8281 3.6581 -0.7388 35 1 9.2262 4.5560 0.7457 36 1 8.1788 3.1193 0.8284 37 1 2.2719 2.1231 -1.9978 38 1 0.6267 3.7490 -4.4012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714072865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:54 Heat of formation + Delta-G solvation = 36.579329 kcal Electronic energy + Delta-G solvation = -20210.985947 eV Core-core repulsion = 17090.046784 eV Total energy + Delta-G solvation = -3120.939162 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.56640 -38.97237 -36.60571 -33.69496 -32.92199 -32.34299 -31.20505 -29.67155 -27.89981 -26.99823 -24.42454 -23.22804 -22.08837 -20.48508 -20.06743 -19.43135 -18.15625 -17.29716 -16.57506 -15.74896 -15.41630 -15.12756 -14.29379 -14.00326 -13.87487 -13.35458 -13.12629 -13.05507 -12.89381 -12.80545 -12.54100 -12.07322 -12.03445 -11.39132 -10.93028 -10.83849 -10.71274 -10.68121 -10.39513 -10.14674 -9.97923 -9.65225 -9.48320 -9.34554 -8.90816 -8.81539 -8.49385 -6.97794 -5.76259 -3.05063 1.77826 2.15794 2.92227 3.42290 3.48210 3.49487 3.65634 3.75579 4.58187 4.63634 4.81297 5.25925 5.39182 5.48447 5.50929 5.57082 5.62515 5.84617 5.98238 5.98750 6.01893 6.03274 6.21562 6.22111 6.48146 6.55029 6.61167 6.63415 6.66422 6.95306 7.02856 7.08925 7.29086 7.70853 7.82818 8.15082 8.40904 8.65026 9.52763 10.08527 10.44332 11.45735 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.018208 B = 0.005474 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.389038 B = 5113.965151 C = 6334.209033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.698 5.698 7 C 0.598 3.402 8 O -0.546 6.546 9 C -0.010 4.010 10 N -0.246 5.246 11 N -0.383 5.383 12 H 0.446 0.554 13 C -0.028 4.028 14 C -0.149 4.149 15 C -0.077 4.077 16 N -0.721 5.721 17 C -0.235 4.235 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.282 1.282 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.417 0.583 33 H 0.181 0.819 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.385 0.615 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.429 4.341 8.223 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.010 4.010 6 N -0.349 5.349 7 C 0.382 3.618 8 O -0.423 6.423 9 C -0.171 4.171 10 N -0.082 5.082 11 N -0.097 5.097 12 H 0.290 0.710 13 C -0.172 4.172 14 C -0.159 4.159 15 C -0.135 4.135 16 N -0.363 5.363 17 C -0.366 4.366 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.734 3.266 22 H -0.219 1.219 23 H -0.219 1.219 24 H -0.208 1.208 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.254 0.746 33 H 0.198 0.802 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.219 0.781 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.690 4.058 8.228 14.086 hybrid contribution -0.459 1.192 -0.596 1.409 sum 10.230 5.249 7.632 13.801 Atomic orbital electron populations 1.21771 0.95762 0.99575 1.03261 1.22066 0.96932 0.98392 1.00029 1.20569 0.89930 0.92802 0.91473 0.92850 1.21715 0.95669 0.82406 1.01204 1.45864 1.06778 1.11082 1.71154 1.16874 0.82599 0.85348 0.76956 1.90720 1.56329 1.44218 1.51057 1.21987 0.91948 0.93284 1.09891 1.73694 1.23065 0.93783 1.17666 1.43259 1.04587 1.09322 1.52527 0.71006 1.22655 0.88719 0.96519 1.09261 1.20387 0.95049 0.93172 1.07340 1.20153 0.92493 0.98614 1.02249 1.42449 1.16618 1.65927 1.11285 1.19201 0.91738 1.27864 0.97785 0.90929 1.24723 0.97982 1.01659 0.96408 1.69671 1.35126 1.49075 1.03854 0.86265 0.84262 0.79303 0.76804 1.21862 1.21941 1.20763 0.94919 0.94149 0.89654 0.92496 0.93827 0.91679 0.91637 0.74598 0.80158 0.91550 0.92277 0.89888 0.78063 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.17 37.15 0.34 -2.32 16 2 C -0.13 -2.35 5.61 -26.74 -0.15 -2.50 16 3 C 0.16 3.12 2.59 -67.93 -0.18 2.94 16 4 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 2.04 5.23 -4.04 -0.02 2.02 16 6 N -0.70 -12.96 5.39 -61.29 -0.33 -13.29 16 7 C 0.60 11.18 7.82 -12.39 -0.10 11.09 16 8 O -0.55 -10.95 15.11 5.30 0.08 -10.87 16 9 C -0.01 -0.16 7.13 -82.77 -0.59 -0.75 16 10 N -0.25 -3.90 11.92 33.42 0.40 -3.50 16 11 N -0.38 -4.33 6.83 30.47 0.21 -4.12 16 12 H 0.45 3.27 8.96 -190.44 -1.71 1.56 16 13 C -0.03 -0.29 11.97 -17.17 -0.21 -0.49 16 14 C -0.15 -2.05 6.25 -104.40 -0.65 -2.70 16 15 C -0.08 -0.92 9.93 36.00 0.36 -0.56 16 16 N -0.72 -16.98 4.51 -53.43 -0.24 -17.22 16 17 C -0.23 -6.11 7.74 -15.06 -0.12 -6.22 16 18 H 0.07 1.84 7.31 -52.49 -0.38 1.46 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 20 N -0.93 -27.41 13.06 55.49 0.72 -26.68 16 21 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.83 5.97 -51.93 -0.31 1.52 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.42 8.18 7.86 -40.82 -0.32 7.86 16 33 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 1.14 6.72 -51.93 -0.35 0.80 16 37 H 0.39 9.99 7.80 -40.82 -0.32 9.68 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -31.92 320.86 -7.50 -39.42 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -6.75 Total: 14.48 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.41 Total: 0.08 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: 0.76 Total: -64.81 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.92 -7.50 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714072865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.998 kcal (2) G-P(sol) polarization free energy of solvation -31.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds