Wall clock time and date at job start Mon Mar 30 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46951 * 89.99797 * 11 9 7 13 13 H 1.48500 * 109.47313 * 210.00112 * 11 9 7 14 14 H 1.48501 * 109.46991 * 330.00153 * 11 9 7 15 15 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 16 16 C 1.34775 * 120.00290 * 275.00553 * 15 2 1 17 17 O 1.21284 * 120.00239 * 359.97438 * 16 15 2 18 18 C 1.50707 * 119.99766 * 179.97438 * 16 15 2 19 19 C 1.50706 * 109.46782 * 179.97438 * 18 16 15 20 20 N 1.30493 * 125.65006 * 305.02734 * 19 18 16 21 21 C 1.34131 * 109.25318 * 180.02562 * 20 19 18 22 22 C 1.34670 * 108.02246 * 359.97438 * 21 20 19 23 23 N 1.35042 * 125.64423 * 124.71874 * 19 18 16 24 24 H 0.96997 * 126.40435 * 0.02562 * 23 19 18 25 25 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 26 26 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 28 28 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 29 29 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 32 32 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 33 33 H 0.97001 * 120.00803 * 179.97438 * 10 9 7 34 34 H 0.97003 * 119.99849 * 95.00425 * 15 2 1 35 35 H 1.08993 * 109.47314 * 299.99790 * 18 16 15 36 36 H 1.08997 * 109.47088 * 60.00406 * 18 16 15 37 37 H 1.08003 * 125.98466 * 180.02562 * 21 20 19 38 38 H 1.07995 * 126.59103 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3954 -1.3402 -2.7793 8 1 6.0938 -0.8594 -2.1103 9 6 5.8582 -1.9945 -3.9126 10 7 5.0071 -2.5800 -4.7281 11 14 7.6890 -2.0441 -4.2803 12 1 8.2890 -3.2448 -3.6452 13 1 7.8973 -2.1049 -5.7494 14 1 8.3360 -0.8221 -3.7387 15 7 2.0183 -0.6905 1.1962 16 6 2.1469 -0.0182 2.3572 17 8 1.8588 1.1587 2.4115 18 6 2.6487 -0.7288 3.5878 19 6 2.7000 0.2398 4.7413 20 7 3.3340 1.3804 4.7490 21 6 3.1611 1.9744 5.9392 22 6 2.3902 1.1716 6.6974 23 7 2.0926 0.0738 5.9359 24 1 1.5495 -0.6834 6.2053 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5137 0.8900 28 1 1.6055 -0.2617 -2.1369 29 1 1.7517 -1.7714 -1.2056 30 1 3.9995 -1.0726 -0.4258 31 1 3.8532 0.4372 -1.3572 32 1 3.4261 -1.7357 -3.1104 33 1 5.3303 -3.0369 -5.5203 34 1 2.2490 -1.6317 1.1527 35 1 1.9758 -1.5505 3.8326 36 1 3.6478 -1.1212 3.3987 37 1 3.5680 2.9295 6.2368 38 1 2.0660 1.3597 7.7103 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715694771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:24 Heat of formation + Delta-G solvation = 25.108705 kcal Electronic energy + Delta-G solvation = -19525.342012 eV Core-core repulsion = 16403.905446 eV Total energy + Delta-G solvation = -3121.436566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.17223 -39.61711 -36.47826 -34.30181 -32.69936 -32.47711 -31.57539 -30.43908 -27.85089 -27.43647 -24.00352 -22.16576 -21.68899 -21.25848 -20.54044 -20.21274 -18.11720 -17.29133 -16.88983 -15.99098 -15.54847 -14.78710 -14.65688 -14.22184 -14.17493 -13.78403 -13.61703 -13.43445 -13.26348 -13.06234 -12.79176 -12.64437 -12.08482 -11.79544 -11.17874 -10.99081 -10.76221 -10.60587 -10.52796 -10.12592 -10.02734 -10.01503 -9.75204 -9.67049 -8.94812 -8.82491 -8.55179 -6.89968 -5.74702 -3.03241 1.85155 2.71273 2.80022 3.05310 3.45367 3.45727 3.50984 3.53074 4.15583 4.59723 4.66493 4.82569 4.96059 5.04565 5.14912 5.29996 5.31405 5.39912 5.53788 5.57714 5.74702 5.78971 5.91463 5.96871 6.07605 6.26972 6.31326 6.37697 6.61010 6.61947 6.85999 6.91456 7.14668 7.61537 7.73164 8.02820 8.34848 8.44590 9.55619 10.13538 10.48209 11.48323 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.003526 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.689123 B = 7938.930139 C = 8780.116000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.089 0.911 4 C -0.134 4.134 5 C 0.154 3.846 6 N -0.735 5.735 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.935 5.935 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.281 1.281 15 N -0.721 5.721 16 C 0.518 3.482 17 O -0.518 6.518 18 C -0.058 4.058 19 C 0.221 3.779 20 N -0.458 5.458 21 C -0.026 4.026 22 C -0.060 4.060 23 N -0.568 5.568 24 H 0.416 0.584 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.401 0.599 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.169 0.831 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.583 1.573 21.623 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.107 0.893 4 C -0.172 4.172 5 C 0.026 3.974 6 N -0.379 5.379 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.584 5.584 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 N -0.373 5.373 16 C 0.301 3.699 17 O -0.393 6.393 18 C -0.099 4.099 19 C -0.044 4.044 20 N -0.177 5.177 21 C -0.175 4.175 22 C -0.194 4.194 23 N -0.172 5.172 24 H 0.254 0.746 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.216 0.784 33 H 0.064 0.936 34 H 0.235 0.765 35 H 0.124 0.876 36 H 0.140 0.860 37 H 0.186 0.814 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.127 2.857 21.006 23.494 hybrid contribution 0.181 -1.348 0.419 1.423 sum -9.946 1.508 21.424 23.669 Atomic orbital electron populations 1.22154 0.95625 1.01836 1.02216 1.20954 0.93363 0.97820 0.83686 0.89321 1.22055 0.98080 1.00701 0.96396 1.20640 0.90349 0.95697 0.90703 1.42375 1.05361 1.64938 1.25187 1.19251 0.83876 1.28313 1.05478 0.91189 1.24736 0.97714 1.00979 0.97658 1.69658 1.32776 1.40855 1.15139 0.86185 0.85135 0.77709 0.77175 1.21736 1.21777 1.20702 1.46050 1.67625 1.14141 1.09520 1.20027 0.78241 0.87453 0.84141 1.90761 1.48531 1.15335 1.84667 1.19966 1.05188 0.95534 0.89261 1.22375 0.98293 0.96310 0.87384 1.70286 1.21538 1.04744 1.21141 1.22408 1.02960 1.01428 0.90664 1.22708 1.07099 0.90172 0.99412 1.43229 1.41338 1.19461 1.13158 0.74640 0.91583 0.92613 0.92576 0.90320 0.91418 0.96284 0.96347 0.78362 0.93552 0.76483 0.87646 0.86034 0.81400 0.80697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 2 C 0.15 1.99 2.57 -67.94 -0.17 1.81 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.13 -2.06 4.87 -26.74 -0.13 -2.19 16 5 C 0.15 3.09 6.15 -4.04 -0.02 3.07 16 6 N -0.73 -18.75 5.60 -59.91 -0.34 -19.08 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 10 N -0.94 -28.46 13.06 55.49 0.72 -27.74 16 11 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 15 N -0.72 -8.64 4.53 -53.81 -0.24 -8.89 16 16 C 0.52 6.86 7.78 -10.98 -0.09 6.78 16 17 O -0.52 -9.21 15.21 5.55 0.08 -9.12 16 18 C -0.06 -0.54 6.33 -29.03 -0.18 -0.73 16 19 C 0.22 2.62 6.96 -155.42 -1.08 1.54 16 20 N -0.46 -6.92 10.58 -10.81 -0.11 -7.03 16 21 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 22 C -0.06 -0.53 12.04 -16.56 -0.20 -0.73 16 23 N -0.57 -4.79 6.15 -10.23 -0.06 -4.85 16 24 H 0.42 1.90 8.96 -40.82 -0.37 1.53 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.02 0.38 7.75 -51.93 -0.40 -0.02 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 33 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.40 3.93 8.60 -40.82 -0.35 3.57 16 35 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.17 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -37.56 327.50 -7.62 -45.19 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.60 Total: 8.89 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.99 Total: 0.05 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -0.03 Total: -67.59 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.56 -7.62 -45.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715694771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.294 kcal (2) G-P(sol) polarization free energy of solvation -37.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds