Wall clock time and date at job start Mon Mar 30 2020 01:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47370 * 2 1 4 4 C 1.53000 * 109.46820 * 239.99988 * 2 1 3 5 5 C 1.52999 * 109.47231 * 174.99880 * 4 2 1 6 6 N 1.46498 * 109.47328 * 179.97438 * 5 4 2 7 7 C 1.36940 * 119.99959 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00041 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00039 * 180.02562 * 7 6 5 10 10 N 1.31621 * 119.99932 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00228 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47105 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47110 * 120.00259 * 11 9 7 14 14 H 1.48504 * 109.47068 * 240.00516 * 11 9 7 15 15 N 1.46497 * 109.47034 * 120.00507 * 2 1 3 16 16 C 1.34787 * 119.99650 * 274.99581 * 15 2 1 17 17 O 1.21275 * 119.99611 * 0.02562 * 16 15 2 18 18 C 1.50697 * 119.99828 * 180.02562 * 16 15 2 19 19 C 1.50698 * 109.47030 * 179.97438 * 18 16 15 20 20 C 1.39870 * 125.89873 * 124.99889 * 19 18 16 21 21 C 1.35318 * 107.92236 * 179.76106 * 20 19 18 22 22 N 1.34948 * 107.74290 * 0.42279 * 21 20 19 23 23 H 0.97001 * 126.03958 * 179.84649 * 22 21 20 24 24 N 1.30835 * 125.89830 * 305.02686 * 19 18 16 25 25 H 1.09000 * 109.47370 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46516 * 300.00138 * 1 2 3 27 27 H 1.09002 * 109.47123 * 59.99850 * 1 2 3 28 28 H 1.09000 * 109.47255 * 295.00274 * 4 2 1 29 29 H 1.08998 * 109.47260 * 55.00302 * 4 2 1 30 30 H 1.09000 * 109.47323 * 300.00352 * 5 4 2 31 31 H 1.09007 * 109.46938 * 60.00201 * 5 4 2 32 32 H 0.96996 * 120.00191 * 0.02562 * 6 5 4 33 33 H 0.96998 * 120.00566 * 179.97438 * 10 9 7 34 34 H 0.97003 * 120.00382 * 94.99931 * 15 2 1 35 35 H 1.09002 * 109.47553 * 59.99600 * 18 16 15 36 36 H 1.09004 * 109.47119 * 300.00033 * 18 16 15 37 37 H 1.08008 * 126.03860 * 0.02562 * 20 19 18 38 38 H 1.07999 * 126.12849 * 180.26834 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0531 -1.3045 -2.5097 7 6 5.3952 -1.3405 -2.7796 8 1 6.0936 -0.8597 -2.1107 9 6 5.8578 -1.9949 -3.9130 10 7 5.0066 -2.5803 -4.7285 11 14 7.6885 -2.0446 -4.2809 12 1 8.4271 -1.3177 -3.2172 13 1 8.1465 -3.4566 -4.3244 14 1 7.9474 -1.3995 -5.5932 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8583 1.1583 2.4117 18 6 2.6500 -0.7286 3.5874 19 6 2.7012 0.2398 4.7409 20 6 2.0797 0.0702 5.9824 21 6 2.3672 1.1516 6.7432 22 7 3.1354 1.9807 6.0059 23 1 3.4907 2.8362 6.2936 24 7 3.3344 1.3846 4.7538 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.7516 -1.7715 -1.2056 29 1 1.6054 -0.2617 -2.1370 30 1 3.8532 0.4369 -1.3574 31 1 3.9995 -1.0729 -0.4261 32 1 3.4258 -1.7359 -3.1106 33 1 5.3298 -3.0373 -5.5207 34 1 2.2491 -1.6319 1.1525 35 1 3.6493 -1.1206 3.3978 36 1 1.9777 -1.5510 3.8325 37 1 1.4800 -0.7766 6.2824 38 1 2.0385 1.3220 7.7578 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732680902.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:11 Heat of formation + Delta-G solvation = 38.443025 kcal Electronic energy + Delta-G solvation = -19471.099009 eV Core-core repulsion = 16350.240663 eV Total energy + Delta-G solvation = -3120.858346 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30582 -39.53709 -36.45759 -34.28797 -33.11291 -31.83407 -30.65859 -30.06503 -28.37605 -27.81162 -24.00165 -22.31540 -21.57841 -21.03783 -20.36239 -19.57701 -18.26597 -17.22709 -16.81494 -15.99734 -15.32007 -14.69249 -14.51193 -14.33233 -13.75980 -13.69368 -13.57886 -13.37631 -13.19166 -12.88764 -12.74348 -12.55420 -11.97379 -11.76433 -11.16303 -10.99154 -10.76684 -10.72044 -10.57741 -10.51172 -9.98613 -9.77314 -9.67470 -9.44554 -8.91768 -8.86193 -8.80773 -6.89457 -5.74581 -3.03003 1.79364 2.57448 2.75246 2.81862 3.41988 3.45138 3.51025 3.53325 4.43274 4.59784 4.62660 4.91824 5.00067 5.10735 5.29220 5.36303 5.42520 5.48912 5.57973 5.58562 5.77357 5.81055 5.82899 5.99589 6.10710 6.28890 6.34037 6.39437 6.45467 6.65974 6.87008 6.92834 7.13575 7.58289 7.68107 7.73573 8.41021 8.44740 9.55773 10.13954 10.48643 11.48525 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.023585 B = 0.003505 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.899504 B = 7987.508997 C = 8836.832585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.087 0.913 4 C -0.134 4.134 5 C 0.154 3.846 6 N -0.735 5.735 7 C -0.237 4.237 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 N -0.721 5.721 16 C 0.516 3.484 17 O -0.529 6.529 18 C -0.063 4.063 19 C 0.088 3.912 20 C -0.267 4.267 21 C 0.051 3.949 22 N -0.479 5.479 23 H 0.438 0.562 24 N -0.259 5.259 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.401 0.599 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.147 0.853 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.571 3.525 22.187 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.041 3.959 3 H 0.105 0.895 4 C -0.172 4.172 5 C 0.026 3.974 6 N -0.379 5.379 7 C -0.368 4.368 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.584 5.584 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 N -0.373 5.373 16 C 0.301 3.699 17 O -0.405 6.405 18 C -0.105 4.105 19 C -0.080 4.080 20 C -0.297 4.297 21 C -0.096 4.096 22 N -0.187 5.187 23 H 0.281 0.719 24 N -0.082 5.082 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.236 0.764 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.165 0.835 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.882 5.215 21.585 23.916 hybrid contribution 0.551 -0.803 0.196 0.993 sum -8.331 4.412 21.781 23.734 Atomic orbital electron populations 1.22155 0.95612 1.01895 1.02168 1.20940 0.93413 0.97708 0.83810 0.89499 1.22056 0.98006 1.00759 0.96419 1.20637 0.90425 0.95606 0.90700 1.42384 1.05372 1.64921 1.25187 1.19295 0.83884 1.28219 1.05448 0.91173 1.24741 0.97712 1.00989 0.97688 1.69669 1.32679 1.40891 1.15127 0.86117 0.85116 0.77199 0.77794 1.20540 1.21867 1.21871 1.46085 1.67524 1.14185 1.09554 1.20291 0.77915 0.87420 0.84290 1.90723 1.49213 1.15695 1.84858 1.20067 1.04576 0.96389 0.89486 1.21575 0.97477 0.93908 0.95084 1.21386 1.11202 1.02474 0.94622 1.22534 0.96641 0.92002 0.98423 1.46412 1.41953 1.19460 1.10882 0.71870 1.77465 1.23188 1.09134 0.98406 0.92551 0.92521 0.91682 0.91369 0.90378 0.96453 0.96274 0.78346 0.93596 0.76424 0.87000 0.86975 0.83522 0.80852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.48 37.16 0.35 -1.58 16 2 C 0.15 2.04 2.57 -67.93 -0.17 1.87 16 3 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.13 -2.10 4.87 -26.73 -0.13 -2.23 16 5 C 0.15 3.13 6.15 -4.04 -0.02 3.11 16 6 N -0.73 -18.88 5.60 -59.91 -0.34 -19.21 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 11 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 N -0.72 -9.06 4.53 -53.80 -0.24 -9.31 16 16 C 0.52 7.14 7.78 -10.98 -0.09 7.05 16 17 O -0.53 -9.53 15.22 5.56 0.08 -9.45 16 18 C -0.06 -0.66 6.28 -29.04 -0.18 -0.84 16 19 C 0.09 1.09 6.02 -82.41 -0.50 0.59 16 20 C -0.27 -2.59 10.72 -40.01 -0.43 -3.02 16 21 C 0.05 0.42 11.99 -17.22 -0.21 0.21 16 22 N -0.48 -4.80 7.36 30.45 0.22 -4.58 16 23 H 0.44 2.96 8.96 -182.60 -1.64 1.32 16 24 N -0.26 -3.70 12.05 33.67 0.41 -3.29 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.02 0.39 7.75 -51.93 -0.40 -0.01 16 32 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 33 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.40 4.19 8.60 -40.82 -0.35 3.84 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.11 0.78 8.12 -51.93 -0.42 0.36 16 37 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -37.09 327.98 -7.71 -44.80 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.87 Total: 8.53 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.62 Total: -2.34 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: 0.77 Total: -64.20 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.09 -7.71 -44.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732680902.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.244 kcal (2) G-P(sol) polarization free energy of solvation -37.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds