Wall clock time and date at job start Mon Mar 30 2020 01:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47208 * 2 1 4 4 C 1.53007 * 109.46910 * 240.00265 * 2 1 3 5 5 C 1.52992 * 109.47078 * 175.00287 * 4 2 1 6 6 N 1.46492 * 109.47333 * 180.02562 * 5 4 2 7 7 C 1.36943 * 120.00245 * 179.97438 * 6 5 4 8 8 H 1.07994 * 119.99713 * 359.97438 * 7 6 5 9 9 C 1.38810 * 119.99713 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00408 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99619 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46791 * 89.99861 * 11 9 7 13 13 H 1.48499 * 109.46970 * 209.99641 * 11 9 7 14 14 H 1.48497 * 109.47092 * 330.00080 * 11 9 7 15 15 N 1.46502 * 109.47091 * 120.00379 * 2 1 3 16 16 C 1.34770 * 120.00255 * 275.00058 * 15 2 1 17 17 O 1.21571 * 119.99756 * 359.97438 * 16 15 2 18 18 C 1.47707 * 120.00419 * 180.02562 * 16 15 2 19 19 C 1.41504 * 126.52145 * 179.70480 * 18 16 15 20 20 C 1.35366 * 105.50254 * 180.26696 * 19 18 16 21 21 N 1.35030 * 107.22840 * 359.97438 * 20 19 18 22 22 C 1.46504 * 124.88023 * 179.97438 * 21 20 19 23 23 N 1.28461 * 110.23543 * 0.02562 * 21 20 19 24 24 H 1.08996 * 109.47012 * 59.99830 * 1 2 3 25 25 H 1.09000 * 109.47208 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46828 * 299.99440 * 1 2 3 27 27 H 1.09004 * 109.47032 * 295.00007 * 4 2 1 28 28 H 1.08992 * 109.46832 * 55.00060 * 4 2 1 29 29 H 1.09005 * 109.47040 * 300.00311 * 5 4 2 30 30 H 1.09000 * 109.47423 * 59.99859 * 5 4 2 31 31 H 0.97004 * 120.00067 * 0.02562 * 6 5 4 32 32 H 0.97002 * 120.00020 * 180.02562 * 10 9 7 33 33 H 0.97008 * 119.99582 * 94.99831 * 15 2 1 34 34 H 1.07998 * 127.24544 * 0.24582 * 19 18 16 35 35 H 1.07997 * 126.38165 * 179.97438 * 20 19 18 36 36 H 1.08999 * 109.46901 * 270.02120 * 22 21 20 37 37 H 1.08994 * 109.47458 * 30.02142 * 22 21 20 38 38 H 1.09002 * 109.47109 * 150.02566 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6134 -1.3138 6 7 4.0530 -1.3033 -2.5102 7 6 5.3951 -1.3392 -2.7803 8 1 6.0935 -0.8585 -2.1114 9 6 5.8576 -1.9926 -3.9143 10 7 5.0064 -2.5781 -4.7298 11 14 7.6883 -2.0409 -4.2830 12 1 8.2893 -3.2417 -3.6489 13 1 7.8958 -2.1007 -5.7522 14 1 8.3348 -0.8189 -3.7410 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0185 2.3571 17 8 1.8584 1.1612 2.4117 18 6 2.6400 -0.7147 3.5630 19 6 2.8328 -0.1458 4.8442 20 6 3.2978 -1.1523 5.6208 21 7 3.3751 -2.2539 4.8438 22 6 3.8346 -3.5689 5.2979 23 7 2.9890 -1.9829 3.6489 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.7516 -1.7715 -1.2057 28 1 1.6054 -0.2617 -2.1369 29 1 3.8532 0.4369 -1.3573 30 1 3.9994 -1.0729 -0.4261 31 1 3.4256 -1.7342 -3.1117 32 1 5.3296 -3.0350 -5.5221 33 1 2.2490 -1.6319 1.1525 34 1 2.6481 0.8764 5.1400 35 1 3.5583 -1.0864 6.6668 36 1 4.9123 -3.6465 5.1548 37 1 3.5987 -3.6911 6.3550 38 1 3.3345 -4.3474 4.7216 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732754058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:45 Heat of formation + Delta-G solvation = 22.384215 kcal Electronic energy + Delta-G solvation = -19667.445206 eV Core-core repulsion = 16545.890497 eV Total energy + Delta-G solvation = -3121.554709 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.56913 -40.65716 -37.86193 -36.11464 -34.44213 -33.57465 -32.26392 -31.47820 -29.44856 -28.28030 -25.92743 -24.51432 -23.15894 -22.40339 -21.84306 -21.07108 -19.29028 -18.70811 -17.63285 -17.24105 -17.05534 -16.68349 -15.86839 -15.51956 -15.37799 -15.18301 -14.94391 -14.68921 -14.34359 -14.01920 -13.72983 -13.43795 -13.33862 -13.11089 -12.90051 -12.89296 -12.40632 -12.27581 -12.02516 -11.98152 -11.89661 -11.65475 -11.22270 -10.96419 -10.31501 -10.13126 -9.93295 -9.03104 -7.97586 -5.27059 0.54137 1.22405 1.45507 1.47515 1.56398 1.63311 2.22377 2.38995 2.54006 3.35626 3.38481 3.61614 3.99359 4.03833 4.06090 4.15511 4.37659 4.41692 4.49262 4.54993 4.63340 4.71279 4.75195 4.77068 4.78726 4.85999 4.98731 5.19877 5.25325 5.31956 5.35119 5.45869 5.53961 5.92002 6.24907 6.44653 6.91377 7.17393 7.31292 8.05465 8.31151 9.25793 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.004272 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.990421 B = 6552.007326 C = 7669.215112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.149 3.851 3 H 0.074 0.926 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.745 5.745 7 C -0.252 4.252 8 H 0.069 0.931 9 C -0.071 4.071 10 N -0.967 5.967 11 Si 0.974 3.026 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.273 1.273 15 N -0.702 5.702 16 C 0.600 3.400 17 O -0.572 6.572 18 C -0.050 4.050 19 C -0.206 4.206 20 C 0.002 3.998 21 N -0.282 5.282 22 C 0.075 3.925 23 N -0.283 5.283 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.009 0.991 30 H 0.016 0.984 31 H 0.376 0.624 32 H 0.253 0.747 33 H 0.410 0.590 34 H 0.164 0.836 35 H 0.231 0.769 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 -1.369 23.796 24.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.092 0.908 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.388 5.388 7 C -0.383 4.383 8 H 0.087 0.913 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.802 3.198 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.198 1.198 15 N -0.353 5.353 16 C 0.386 3.614 17 O -0.450 6.450 18 C -0.208 4.208 19 C -0.234 4.234 20 C -0.141 4.141 21 N -0.070 5.070 22 C -0.064 4.064 23 N -0.121 5.121 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.209 0.791 32 H 0.062 0.938 33 H 0.246 0.754 34 H 0.182 0.818 35 H 0.247 0.753 36 H 0.114 0.886 37 H 0.152 0.848 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.580 -1.598 23.255 24.220 hybrid contribution 0.864 0.122 -0.349 0.940 sum -5.716 -1.476 22.905 23.654 Atomic orbital electron populations 1.22082 0.93213 1.02950 1.02748 1.20947 0.95196 0.96521 0.82860 0.90785 1.21896 0.94529 1.01680 0.97467 1.20734 0.93599 0.94235 0.88652 1.42541 1.04549 1.65377 1.26308 1.19595 0.85246 1.28017 1.05478 0.91320 1.25559 1.02158 1.01018 0.97619 1.69807 1.34639 1.41763 1.15520 0.85139 0.79913 0.77963 0.76737 1.21103 1.21718 1.19776 1.45983 1.65761 1.14580 1.08956 1.17197 0.76615 0.85361 0.82195 1.90731 1.52728 1.16265 1.85307 1.21926 1.10554 0.91824 0.96484 1.22037 1.07797 1.02031 0.91569 1.23511 1.04639 0.85236 1.00738 1.45940 1.43882 1.12122 1.05090 1.22631 1.02186 0.78030 1.03510 1.73492 1.16500 1.16943 1.05145 0.89911 0.91353 0.93008 0.90544 0.89455 0.97311 0.96637 0.79145 0.93803 0.75415 0.81809 0.75305 0.88562 0.84776 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.48 71.98 0.68 -3.03 16 2 C 0.15 4.44 2.58 44.99 0.12 4.56 16 3 H 0.07 2.46 7.58 -2.39 -0.02 2.44 16 4 C -0.12 -3.84 4.87 30.59 0.15 -3.69 16 5 C 0.15 6.61 6.15 86.38 0.53 7.14 16 6 N -0.74 -39.54 5.60 -343.48 -1.92 -41.47 16 7 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 9 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 10 N -0.97 -59.89 13.06 21.65 0.28 -59.60 16 11 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 N -0.70 -21.37 4.53 -445.52 -2.02 -23.39 16 16 C 0.60 19.94 7.79 86.75 0.68 20.62 16 17 O -0.57 -21.90 16.59 -3.94 -0.07 -21.96 16 18 C -0.05 -1.44 7.13 42.46 0.30 -1.14 16 19 C -0.21 -4.74 10.81 22.41 0.24 -4.50 16 20 C 0.00 0.03 11.46 83.54 0.96 0.98 16 21 N -0.28 -4.96 3.70 -369.45 -1.37 -6.32 16 22 C 0.07 0.53 11.31 127.77 1.44 1.98 16 23 N -0.28 -7.39 11.67 -48.17 -0.56 -7.95 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 29 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.02 0.69 7.75 -2.39 -0.02 0.67 16 31 H 0.38 20.73 7.67 -92.71 -0.71 20.02 16 32 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.41 11.96 8.33 -92.70 -0.77 11.19 16 34 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.23 0.94 8.06 -2.91 -0.02 0.92 16 36 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.13 -0.08 8.13 -2.39 -0.02 -0.10 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -78.31 329.92 2.37 -75.94 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.41 Total: 30.33 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 6.41 Total: 5.35 kcal Atomic # 7 Polarization: -133.14 SS G_CDS: -5.59 Total: -138.73 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.07 Total: -21.96 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -78.31 2.37 -75.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732754058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.323 kcal (2) G-P(sol) polarization free energy of solvation -78.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds