Wall clock time and date at job start Mon Mar 30 2020 00:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46844 * 2 1 4 4 C 1.52997 * 109.47022 * 120.00111 * 2 1 3 5 5 N 1.46507 * 109.47247 * 174.99935 * 4 2 1 6 6 C 1.36933 * 120.00064 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00161 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99825 * 179.97438 * 6 5 4 9 9 N 1.31615 * 119.99744 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 119.99829 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47305 * 90.00324 * 10 8 6 12 12 H 1.48507 * 109.47078 * 210.00174 * 10 8 6 13 13 H 1.48497 * 109.47204 * 329.99715 * 10 8 6 14 14 N 1.46500 * 109.46967 * 239.99989 * 2 1 3 15 15 C 1.46498 * 120.00387 * 299.99929 * 14 2 1 16 16 C 1.34781 * 119.99790 * 120.00102 * 14 2 1 17 17 O 1.21281 * 119.99862 * 0.02562 * 16 14 2 18 18 C 1.50701 * 120.00034 * 179.97438 * 16 14 2 19 19 N 1.46502 * 109.47241 * 180.02562 * 18 16 14 20 20 C 1.34948 * 126.03993 * 124.99420 * 19 18 16 21 21 C 1.35315 * 107.74520 * 179.97438 * 20 19 18 22 22 C 1.39870 * 107.92205 * 0.02562 * 21 20 19 23 23 N 1.30839 * 108.19862 * 359.97438 * 22 21 20 24 24 H 1.08991 * 109.47114 * 299.99850 * 1 2 3 25 25 H 1.09000 * 109.46762 * 60.00243 * 1 2 3 26 26 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47472 * 295.00222 * 4 2 1 28 28 H 1.09001 * 109.47487 * 55.00332 * 4 2 1 29 29 H 0.96999 * 119.99332 * 0.02562 * 5 4 2 30 30 H 0.97004 * 120.00214 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.47091 * 270.00420 * 15 14 2 32 32 H 1.08997 * 109.46930 * 30.00104 * 15 14 2 33 33 H 1.09003 * 109.47142 * 150.00029 * 15 14 2 34 34 H 1.08994 * 109.47031 * 59.99996 * 18 16 14 35 35 H 1.09001 * 109.47021 * 299.99528 * 18 16 14 36 36 H 1.08007 * 126.12251 * 0.27272 * 20 19 18 37 37 H 1.08001 * 126.03475 * 179.97438 * 21 20 19 38 38 H 1.07997 * 125.89701 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1839 -1.4380 2.2072 7 1 3.6468 -1.8432 3.0521 8 6 5.5673 -1.5381 2.1513 9 7 6.2217 -1.0447 1.1215 10 14 6.5000 -2.3730 3.5378 11 1 6.6317 -3.8225 3.2434 12 1 7.8508 -1.7681 3.6603 13 1 5.7593 -2.1919 4.8120 14 7 2.0183 -0.6906 -1.1962 15 6 1.6645 -2.0932 -1.4281 16 6 2.7932 -0.0356 -2.0834 17 8 3.0866 1.1254 -1.8911 18 6 3.2960 -0.7461 -3.3136 19 7 4.1103 0.1746 -4.1108 20 6 5.3798 -0.0366 -4.5169 21 6 5.7713 1.0470 -5.2266 22 6 4.7049 1.9516 -5.2546 23 7 3.7086 1.4295 -4.5862 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7516 -0.1584 2.1369 28 1 1.6054 -1.7198 1.2951 29 1 3.9824 -0.4622 0.4319 30 1 7.1885 -1.1143 1.0825 31 1 2.4158 -2.7377 -0.9717 32 1 0.6905 -2.3002 -0.9847 33 1 1.6238 -2.2852 -2.5003 34 1 2.4485 -1.0890 -3.9069 35 1 3.9018 -1.6022 -3.0166 36 1 5.9748 -0.9153 -4.3160 37 1 6.7371 1.1887 -5.6889 38 1 4.7037 2.9142 -5.7441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:05 Heat of formation + Delta-G solvation = 70.776868 kcal Electronic energy + Delta-G solvation = -20688.001669 eV Core-core repulsion = 17568.545423 eV Total energy + Delta-G solvation = -3119.456246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95871 -39.54253 -36.38392 -34.07537 -33.19796 -31.77566 -30.12579 -29.80256 -27.25353 -26.68931 -25.59081 -22.74232 -21.75817 -20.87006 -20.29482 -18.76121 -17.29915 -17.10548 -16.83925 -15.75981 -15.51939 -14.79093 -14.36226 -14.06605 -13.67761 -13.51992 -13.24023 -13.08599 -12.96571 -12.57551 -12.45117 -12.30096 -12.14966 -11.93543 -11.88078 -11.46981 -10.86135 -10.80005 -10.46684 -10.40660 -10.06842 -9.71922 -9.71613 -9.05841 -8.88889 -8.36672 -8.28843 -6.92341 -5.75687 -3.05141 2.09540 2.60887 2.92209 3.11772 3.29640 3.41444 3.47109 3.49198 4.49854 4.59127 4.82996 4.99552 5.06044 5.19071 5.26295 5.29000 5.37527 5.53545 5.58827 5.63649 5.75797 5.91620 5.96957 6.06277 6.08498 6.16929 6.21506 6.35836 6.45323 6.71130 6.84624 6.94488 7.15821 7.65489 7.68366 7.94880 8.41737 8.48798 9.53282 10.11846 10.47250 11.46382 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.015852 B = 0.006327 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.912791 B = 4424.763466 C = 5699.243360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.128 3.872 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.930 5.930 10 Si 0.906 3.094 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.597 5.597 15 C 0.076 3.924 16 C 0.505 3.495 17 O -0.509 6.509 18 C 0.119 3.881 19 N -0.358 5.358 20 C 0.060 3.940 21 C -0.276 4.276 22 C 0.035 3.965 23 N -0.271 5.271 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.028 0.972 28 H 0.021 0.979 29 H 0.385 0.615 30 H 0.254 0.746 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.173 0.827 37 H 0.145 0.855 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 -2.095 -11.836 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.117 0.883 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.332 5.332 15 C -0.068 4.068 16 C 0.290 3.710 17 O -0.383 6.383 18 C -0.007 4.007 19 N -0.141 5.141 20 C -0.086 4.086 21 C -0.306 4.306 22 C -0.152 4.152 23 N -0.092 5.092 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.219 0.781 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.190 0.810 37 H 0.163 0.837 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.463 -1.482 -11.081 14.647 hybrid contribution 1.706 -0.670 0.417 1.880 sum -7.757 -2.152 -10.664 13.362 Atomic orbital electron populations 1.22059 0.95134 1.01996 1.02168 1.21382 0.93236 0.98509 0.84429 0.88261 1.21003 0.87095 0.96734 0.93599 1.42300 0.99702 1.70108 1.25136 1.19215 0.89448 1.29345 0.99185 0.91274 1.24748 0.96429 1.01664 0.98079 1.69687 1.07135 1.50725 1.30257 0.86205 0.79482 0.78901 0.81672 1.21801 1.21790 1.20794 1.47623 1.50813 1.12210 1.22531 1.21792 1.01966 0.82273 1.00741 1.20304 0.79000 0.87429 0.84225 1.90774 1.55772 1.16372 1.75388 1.21533 0.96927 0.91013 0.91216 1.48079 1.10701 1.14408 1.40879 1.22571 0.86406 1.01222 0.98385 1.21429 1.01769 0.95931 1.11468 1.23840 0.91862 1.00304 0.99162 1.77418 1.24004 0.92830 1.14906 0.91345 0.92587 0.92342 0.95465 0.96140 0.78057 0.93579 0.91391 0.90862 0.91927 0.87427 0.85642 0.80956 0.83726 0.80387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.17 37.16 0.34 -1.64 16 2 C 0.13 2.19 2.80 -67.93 -0.19 2.00 16 3 H 0.10 2.01 6.90 -51.93 -0.36 1.65 16 4 C 0.14 2.89 5.56 -4.04 -0.02 2.87 16 5 N -0.73 -18.71 5.43 -59.91 -0.33 -19.04 16 6 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 10 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 N -0.60 -9.61 2.24 -173.93 -0.39 -10.00 16 15 C 0.08 0.91 9.40 59.85 0.56 1.47 16 16 C 0.51 9.16 7.41 -10.98 -0.08 9.08 16 17 O -0.51 -11.68 15.04 5.56 0.08 -11.60 16 18 C 0.12 1.67 5.54 -5.19 -0.03 1.64 16 19 N -0.36 -5.83 3.40 -62.54 -0.21 -6.04 16 20 C 0.06 0.86 11.45 -17.22 -0.20 0.66 16 21 C -0.28 -3.82 10.80 -40.01 -0.43 -4.25 16 22 C 0.04 0.53 12.03 -17.36 -0.21 0.32 16 23 N -0.27 -4.83 11.64 30.62 0.36 -4.47 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.65 6.66 -51.93 -0.35 0.31 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 29 H 0.39 10.80 7.06 -40.82 -0.29 10.51 16 30 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 33 H 0.06 0.54 6.44 -51.93 -0.33 0.21 16 34 H 0.11 1.15 7.40 -51.93 -0.38 0.77 16 35 H 0.13 1.52 8.04 -51.93 -0.42 1.10 16 36 H 0.17 1.95 8.06 -52.48 -0.42 1.52 16 37 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.18 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 320.99 15.07 4.84 4.84 Total: -1.00 -36.87 320.99 -5.83 -42.70 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.37 Total: 9.17 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -0.50 Total: 4.75 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: 0.15 Total: -67.33 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.87 -5.83 -42.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.477 kcal (2) G-P(sol) polarization free energy of solvation -36.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds