Wall clock time and date at job start Mon Mar 30 2020 00:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.36939 * 120.00451 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99755 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99895 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00259 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99649 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.46951 * 90.00072 * 10 8 6 12 12 H 1.48502 * 109.46981 * 210.00020 * 10 8 6 13 13 H 1.48495 * 109.46993 * 329.99989 * 10 8 6 14 14 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 15 15 C 1.46509 * 119.99920 * 60.00125 * 14 2 1 16 16 C 1.34776 * 120.00710 * 240.00300 * 14 2 1 17 17 O 1.21283 * 119.99682 * 359.97438 * 16 14 2 18 18 C 1.50699 * 120.00475 * 180.02562 * 16 14 2 19 19 N 1.46499 * 109.47051 * 179.97438 * 18 16 14 20 20 C 1.34946 * 126.03651 * 125.00495 * 19 18 16 21 21 C 1.35321 * 107.74702 * 179.97438 * 20 19 18 22 22 C 1.39871 * 107.91900 * 359.97438 * 21 20 19 23 23 N 1.30836 * 108.20217 * 359.74189 * 22 21 20 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 28 28 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 29 29 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 30 30 H 0.96998 * 119.99824 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.46975 * 89.99812 * 15 14 2 32 32 H 1.08995 * 109.47277 * 209.99863 * 15 14 2 33 33 H 1.09003 * 109.46743 * 330.00349 * 15 14 2 34 34 H 1.08994 * 109.46908 * 299.99876 * 18 16 14 35 35 H 1.09006 * 109.46757 * 60.00028 * 18 16 14 36 36 H 1.07997 * 126.12746 * 359.97438 * 20 19 18 37 37 H 1.08003 * 126.03904 * 179.97438 * 21 20 19 38 38 H 1.07999 * 125.89616 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1840 -1.4379 -2.2071 7 1 3.6470 -1.8424 -3.0524 8 6 5.5674 -1.5370 -2.1517 9 7 6.2218 -1.0436 -1.1218 10 14 6.5004 -2.3707 -3.5389 11 1 6.8620 -1.3629 -4.5678 12 1 7.7361 -2.9935 -3.0001 13 1 5.6445 -3.4183 -4.1514 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0932 1.4281 16 6 2.7931 -0.0356 2.0834 17 8 3.0865 1.1255 1.8913 18 6 3.2959 -0.7461 3.3136 19 7 4.1102 0.1746 4.1108 20 6 3.9203 0.4795 5.4116 21 6 4.8804 1.3621 5.7728 22 6 5.6848 1.6045 4.6545 23 7 5.2276 0.8887 3.6593 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.6054 -1.7198 -1.2951 28 1 1.7517 -0.1584 -2.1369 29 1 3.9824 -0.4628 -0.4315 30 1 7.1885 -1.1132 -1.0830 31 1 2.4157 -2.7377 0.9718 32 1 1.6238 -2.2851 2.5002 33 1 0.6904 -2.3002 0.9847 34 1 2.4484 -1.0890 3.9070 35 1 3.9017 -1.6022 3.0165 36 1 3.1416 0.0890 6.0500 37 1 5.0036 1.8016 6.7516 38 1 6.5389 2.2646 4.6200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:13:08 Heat of formation + Delta-G solvation = 73.153125 kcal Electronic energy + Delta-G solvation = -20696.650296 eV Core-core repulsion = 17577.297093 eV Total energy + Delta-G solvation = -3119.353203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96133 -39.54315 -36.37570 -34.03493 -33.19083 -31.75495 -30.09058 -29.79890 -27.25435 -26.69173 -25.55304 -22.70066 -21.73753 -20.87539 -20.29797 -18.75615 -17.30074 -17.02411 -16.85447 -15.73966 -15.57315 -14.68599 -14.37012 -14.07048 -13.75029 -13.41987 -13.20486 -13.11369 -12.97177 -12.57109 -12.48408 -12.27316 -12.15551 -11.92847 -11.87238 -11.44928 -10.82496 -10.73505 -10.46297 -10.27134 -10.01489 -9.70080 -9.65382 -9.06271 -8.82849 -8.38398 -8.28589 -6.85472 -5.66893 -2.97832 2.10853 2.59009 2.88848 3.13775 3.33127 3.46754 3.51215 3.53528 4.53888 4.61990 4.66375 4.89063 5.16819 5.19117 5.25210 5.31920 5.36516 5.54199 5.63022 5.64046 5.72784 5.92725 5.93849 6.07198 6.09180 6.17447 6.18357 6.37334 6.47580 6.73239 6.86256 6.95130 7.15169 7.65592 7.74334 8.00838 8.48206 8.49382 9.60537 10.19314 10.54467 11.54198 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.006321 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.137653 B = 4428.377729 C = 5697.645148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.099 0.901 4 C 0.145 3.855 5 N -0.728 5.728 6 C -0.245 4.245 7 H 0.068 0.932 8 C -0.011 4.011 9 N -0.923 5.923 10 Si 0.904 3.096 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.597 5.597 15 C 0.076 3.924 16 C 0.505 3.495 17 O -0.510 6.510 18 C 0.118 3.882 19 N -0.359 5.359 20 C 0.043 3.957 21 C -0.274 4.274 22 C 0.030 3.970 23 N -0.245 5.245 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.020 0.980 28 H 0.027 0.973 29 H 0.387 0.613 30 H 0.255 0.745 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.169 0.831 37 H 0.144 0.856 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 -0.992 13.562 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.117 0.883 4 C 0.016 3.984 5 N -0.373 5.373 6 C -0.376 4.376 7 H 0.086 0.914 8 C -0.208 4.208 9 N -0.571 5.571 10 Si 0.735 3.265 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.209 1.209 14 N -0.332 5.332 15 C -0.067 4.067 16 C 0.290 3.710 17 O -0.384 6.384 18 C -0.008 4.008 19 N -0.142 5.142 20 C -0.103 4.103 21 C -0.304 4.304 22 C -0.157 4.157 23 N -0.065 5.065 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.221 0.779 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.186 0.814 37 H 0.161 0.839 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.946 -0.872 11.998 16.264 hybrid contribution 0.600 -0.296 0.299 0.732 sum -10.346 -1.168 12.297 16.113 Atomic orbital electron populations 1.22060 0.95180 1.01989 1.02086 1.21387 0.93128 0.98545 0.84522 0.88259 1.20984 0.87257 0.96647 0.93494 1.42310 0.99604 1.70187 1.25173 1.19175 0.89426 1.29814 0.99198 0.91375 1.24767 0.96466 1.01604 0.97936 1.69703 1.07167 1.50345 1.29898 0.86241 0.79570 0.78981 0.81660 1.21755 1.21837 1.20872 1.47625 1.50765 1.12211 1.22558 1.21786 1.01966 0.82351 1.00619 1.20303 0.78726 0.87435 0.84494 1.90771 1.55303 1.16600 1.75679 1.21524 0.95153 0.91671 0.92413 1.48181 1.23183 1.35331 1.07524 1.22458 1.01414 1.00161 0.86225 1.21427 1.00825 1.07177 1.00957 1.23949 1.00784 1.00033 0.90973 1.77784 0.98194 1.08699 1.21850 0.92323 0.91327 0.92720 0.96259 0.95566 0.77855 0.93516 0.91331 0.92025 0.90868 0.86425 0.86585 0.81351 0.83853 0.80309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.17 37.16 0.34 -1.59 16 2 C 0.13 2.18 2.80 -67.94 -0.19 1.99 16 3 H 0.10 2.00 6.90 -51.93 -0.36 1.64 16 4 C 0.14 2.95 5.55 -4.05 -0.02 2.93 16 5 N -0.73 -19.17 5.43 -59.91 -0.33 -19.50 16 6 C -0.24 -7.05 9.99 -15.06 -0.15 -7.20 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 9 N -0.92 -29.29 13.06 55.49 0.72 -28.56 16 10 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 N -0.60 -9.59 2.24 -173.93 -0.39 -9.98 16 15 C 0.08 0.91 9.40 59.85 0.56 1.48 16 16 C 0.51 9.12 7.41 -10.99 -0.08 9.04 16 17 O -0.51 -11.63 15.05 5.56 0.08 -11.55 16 18 C 0.12 1.65 5.54 -5.19 -0.03 1.63 16 19 N -0.36 -5.84 3.39 -62.55 -0.21 -6.05 16 20 C 0.04 0.54 11.45 -17.22 -0.20 0.34 16 21 C -0.27 -3.56 10.80 -40.01 -0.43 -4.00 16 22 C 0.03 0.48 12.03 -17.37 -0.21 0.27 16 23 N -0.25 -4.87 11.66 30.62 0.36 -4.51 16 24 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.39 11.18 7.06 -40.82 -0.29 10.90 16 30 H 0.25 7.86 8.31 -40.82 -0.34 7.52 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.51 6.44 -51.93 -0.33 0.18 16 33 H 0.07 0.75 6.43 -51.93 -0.33 0.41 16 34 H 0.12 1.03 7.33 -51.93 -0.38 0.65 16 35 H 0.12 1.62 8.11 -51.93 -0.42 1.20 16 36 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 38 H 0.18 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -38.31 321.01 -5.83 -44.14 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.37 Total: 8.73 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.50 Total: 4.47 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: 0.15 Total: -68.60 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -38.31 -5.83 -44.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.290 kcal (2) G-P(sol) polarization free energy of solvation -38.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds