Wall clock time and date at job start Mon Mar 30 2020 00:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46726 * 2 1 4 4 C 1.34259 * 125.75336 * 125.00203 * 3 2 1 5 5 C 1.38045 * 107.41939 * 179.97438 * 4 3 2 6 6 C 1.47428 * 126.41432 * 180.02562 * 5 4 3 7 7 O 1.21602 * 120.00252 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99997 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.47072 * 324.98798 * 9 8 6 11 11 C 1.52998 * 109.47728 * 84.99473 * 9 8 6 12 12 C 1.53003 * 109.46928 * 204.99513 * 9 8 6 13 13 N 1.46502 * 109.47294 * 54.99695 * 12 9 8 14 14 C 1.36937 * 120.00033 * 180.02562 * 13 12 9 15 15 H 1.08000 * 119.99993 * 359.97438 * 14 13 12 16 16 C 1.38808 * 119.99598 * 180.02562 * 14 13 12 17 17 N 1.31629 * 119.99673 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00533 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47024 * 89.99867 * 18 16 14 20 20 H 1.48497 * 109.47700 * 210.00157 * 18 16 14 21 21 H 1.48504 * 109.47217 * 330.00564 * 18 16 14 22 22 C 1.41290 * 107.17003 * 359.97438 * 5 4 3 23 23 N 1.30448 * 108.01917 * 0.02562 * 22 5 4 24 24 H 1.08996 * 109.47736 * 299.99675 * 1 2 3 25 25 H 1.09000 * 109.47469 * 60.00346 * 1 2 3 26 26 H 1.09001 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47179 * 239.99962 * 2 1 3 28 28 H 1.08999 * 109.46628 * 120.00021 * 2 1 3 29 29 H 1.08005 * 126.28789 * 0.24258 * 4 3 2 30 30 H 0.97000 * 120.00137 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.46659 * 59.99473 * 11 9 8 32 32 H 1.08993 * 109.47117 * 179.97438 * 11 9 8 33 33 H 1.09001 * 109.46841 * 299.99982 * 11 9 8 34 34 H 1.08997 * 109.47069 * 174.99810 * 12 9 8 35 35 H 1.09000 * 109.46905 * 294.99661 * 12 9 8 36 36 H 0.96998 * 119.99830 * 0.02562 * 13 12 9 37 37 H 0.97004 * 119.99751 * 180.02562 * 17 16 14 38 38 H 1.07999 * 125.99006 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8689 1.9125 0.8925 5 6 3.0713 3.2308 0.5365 6 6 3.9333 4.2031 1.2331 7 8 4.5508 3.8668 2.2251 8 7 4.0360 5.4649 0.7709 9 6 4.8930 6.4309 1.4627 10 1 4.8607 6.2420 2.5357 11 6 6.3317 6.2865 0.9625 12 6 4.3945 7.8494 1.1795 13 7 2.9807 7.9531 1.5490 14 6 2.3146 9.1380 1.3825 15 1 2.8317 9.9961 0.9793 16 6 0.9752 9.2363 1.7331 17 7 0.3348 10.3750 1.5727 18 14 0.0810 7.7523 2.4313 19 1 0.2113 7.7466 3.9106 20 1 -1.3555 7.8205 2.0612 21 1 0.6764 6.5098 1.8773 22 6 2.2985 3.4736 -0.6212 23 7 1.6774 2.3690 -0.9307 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3165 1.4012 1.7320 30 1 3.5431 5.7333 -0.0203 31 1 6.3638 6.4754 -0.1105 32 1 6.9691 7.0055 1.4769 33 1 6.6868 5.2759 1.1643 34 1 4.9760 8.5624 1.7640 35 1 4.5099 8.0699 0.1182 36 1 2.5164 7.1825 1.9115 37 1 -0.6012 10.4439 1.8180 38 1 2.2328 4.4097 -1.1556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754261663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:02 Heat of formation + Delta-G solvation = 48.409051 kcal Electronic energy + Delta-G solvation = -20058.294053 eV Core-core repulsion = 16937.867866 eV Total energy + Delta-G solvation = -3120.426187 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 266.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43631 -39.14817 -36.19481 -34.75957 -33.66496 -31.54917 -30.67594 -30.50990 -29.20412 -25.94060 -24.36228 -23.17878 -22.05802 -20.93268 -20.52152 -19.85826 -18.12547 -17.46062 -16.05727 -15.84924 -15.80193 -14.83988 -14.68748 -14.40293 -14.06025 -13.92232 -13.82066 -12.91102 -12.85643 -12.70201 -12.56597 -12.44354 -12.34802 -12.17916 -11.81600 -11.78878 -11.06570 -11.03377 -10.85691 -10.45993 -10.10351 -9.70573 -9.63635 -9.59653 -8.93601 -8.87745 -8.59064 -7.24572 -5.77253 -3.13022 1.49309 2.16172 2.18768 3.39079 3.44211 3.46921 3.53112 3.66094 4.16754 4.55191 4.59933 4.61593 4.74419 4.81300 5.07627 5.17199 5.23060 5.29028 5.40192 5.46617 5.51389 5.61625 5.70839 5.76712 5.87954 5.98551 6.10886 6.34167 6.36396 6.44355 6.64506 6.68450 6.91513 7.43726 7.87463 7.98765 8.41611 8.55246 9.20937 9.93321 10.12972 11.40948 Molecular weight = 266.15amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.005814 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.277173 B = 4814.627216 C = 6092.645388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 N -0.364 5.364 4 C 0.123 3.877 5 C -0.289 4.289 6 C 0.594 3.406 7 O -0.559 6.559 8 N -0.711 5.711 9 C 0.131 3.869 10 H 0.087 0.913 11 C -0.156 4.156 12 C 0.149 3.851 13 N -0.755 5.755 14 C -0.246 4.246 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.933 5.933 18 Si 0.881 3.119 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.276 1.276 22 C 0.085 3.915 23 N -0.296 5.296 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.186 0.814 30 H 0.402 0.598 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.033 0.967 36 H 0.363 0.637 37 H 0.259 0.741 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -21.109 -4.306 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.007 3.993 3 N -0.144 5.144 4 C -0.028 4.028 5 C -0.304 4.304 6 C 0.382 3.618 7 O -0.439 6.439 8 N -0.361 5.361 9 C 0.027 3.973 10 H 0.105 0.895 11 C -0.215 4.215 12 C 0.021 3.979 13 N -0.402 5.402 14 C -0.375 4.375 15 H 0.109 0.891 16 C -0.188 4.188 17 N -0.581 5.581 18 Si 0.712 3.288 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.202 1.202 22 C -0.103 4.103 23 N -0.116 5.116 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.203 0.797 30 H 0.237 0.763 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.196 0.804 37 H 0.069 0.931 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.343 -21.805 -4.487 22.894 hybrid contribution -0.533 -0.402 0.730 0.990 sum 4.810 -22.207 -3.756 23.030 Atomic orbital electron populations 1.22067 0.93433 1.03001 1.03979 1.21794 0.96443 0.77007 1.04080 1.48633 1.34489 1.10585 1.20681 1.22946 0.91840 0.93690 0.94340 1.20339 1.11432 0.95405 1.03243 1.17219 0.80049 0.81522 0.83044 1.90731 1.47737 1.78992 1.26430 1.45822 1.48275 1.10151 1.31902 1.21292 0.89367 0.88770 0.97907 0.89472 1.22086 0.95914 1.02128 1.01404 1.20972 0.86508 0.91958 0.98466 1.42716 1.06898 1.11996 1.78554 1.19054 0.93149 0.89202 1.36130 0.89109 1.24643 0.96546 0.96441 1.01219 1.69705 1.10379 1.24090 1.53913 0.86597 0.79402 0.83449 0.79398 1.21141 1.21766 1.20188 1.24158 0.93656 0.97413 0.95104 1.77134 1.23734 0.97197 1.13547 0.91865 0.90858 0.90539 0.89389 0.88343 0.79673 0.76267 0.92446 0.91558 0.92374 0.93983 0.94926 0.80356 0.93056 0.79191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.09 37.16 0.37 -0.79 16 2 C 0.13 0.88 7.21 -4.04 -0.03 0.85 16 3 N -0.36 -4.08 3.65 -60.81 -0.22 -4.31 16 4 C 0.12 1.48 11.25 -16.56 -0.19 1.29 16 5 C -0.29 -4.16 6.13 -105.07 -0.64 -4.80 16 6 C 0.59 9.82 7.78 -12.52 -0.10 9.72 16 7 O -0.56 -10.65 16.56 5.28 0.09 -10.56 16 8 N -0.71 -11.19 4.51 -54.88 -0.25 -11.44 16 9 C 0.13 2.12 2.73 -67.93 -0.19 1.93 16 10 H 0.09 1.57 7.58 -51.93 -0.39 1.17 16 11 C -0.16 -2.07 9.48 37.16 0.35 -1.71 16 12 C 0.15 2.77 5.82 -4.04 -0.02 2.75 16 13 N -0.76 -17.75 5.24 -59.91 -0.31 -18.06 16 14 C -0.25 -6.90 10.47 -15.06 -0.16 -7.06 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 17 N -0.93 -29.35 13.97 55.49 0.78 -28.58 16 18 Si 0.88 22.60 27.73 -169.99 -4.71 17.89 16 19 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 21 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 22 C 0.08 1.14 11.50 -16.98 -0.20 0.95 16 23 N -0.30 -4.02 12.33 30.86 0.38 -3.64 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.42 8.06 -51.93 -0.42 0.00 16 29 H 0.19 1.76 8.06 -52.48 -0.42 1.34 16 30 H 0.40 5.88 7.56 -40.82 -0.31 5.57 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.36 8.61 5.20 -40.82 -0.21 8.39 16 37 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 38 H 0.19 2.18 7.50 -52.49 -0.39 1.78 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -35.37 326.29 -5.77 -41.14 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.55 Total: 9.39 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.89 Total: 3.25 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: 0.37 Total: -66.02 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.37 -5.77 -41.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754261663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.547 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds