Wall clock time and date at job start Mon Mar 30 2020 00:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47450 * 2 1 4 4 H 1.08996 * 109.47187 * 54.99913 * 3 2 1 5 5 C 1.50703 * 109.47286 * 174.99820 * 3 2 1 6 6 H 1.08005 * 119.99972 * 119.99757 * 5 3 2 7 7 C 1.37876 * 120.00151 * 300.00200 * 5 3 2 8 8 N 1.31518 * 119.99762 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00034 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47207 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46785 * 120.00245 * 9 7 5 12 12 H 1.48493 * 109.47269 * 239.99993 * 9 7 5 13 13 O 1.45205 * 109.47325 * 294.99998 * 3 2 1 14 14 C 1.34227 * 116.99676 * 89.99909 * 13 3 2 15 15 O 1.20822 * 120.00356 * 359.97438 * 14 13 3 16 16 C 1.50708 * 119.99545 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.63749 * 299.57815 * 16 14 13 18 18 C 1.53390 * 109.81317 * 179.04807 * 16 14 13 19 19 C 1.53030 * 108.43493 * 172.77629 * 18 16 14 20 20 C 1.50057 * 110.20082 * 49.24725 * 19 18 16 21 21 C 1.50704 * 117.96162 * 163.08648 * 20 19 18 22 22 C 1.29447 * 124.08094 * 343.31833 * 20 19 18 23 23 C 1.50699 * 117.96580 * 180.23516 * 22 20 19 24 24 C 1.50071 * 124.06984 * 359.95932 * 22 20 19 25 25 H 1.08996 * 109.47539 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46661 * 300.00274 * 1 2 3 27 27 H 1.09000 * 109.46571 * 59.99611 * 1 2 3 28 28 H 1.09000 * 109.47080 * 240.00052 * 2 1 3 29 29 H 1.09000 * 109.46969 * 120.00026 * 2 1 3 30 30 H 0.97004 * 119.99806 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.64525 * 292.45854 * 18 16 14 32 32 H 1.09003 * 109.64468 * 52.88250 * 18 16 14 33 33 H 1.09001 * 109.35539 * 169.64730 * 19 18 16 34 34 H 1.09004 * 109.35639 * 289.36360 * 19 18 16 35 35 H 1.08995 * 109.47395 * 185.47284 * 21 20 19 36 36 H 1.08994 * 109.47101 * 305.47364 * 21 20 19 37 37 H 1.09000 * 109.47099 * 65.47377 * 21 20 19 38 38 H 1.08996 * 109.46685 * 174.88906 * 23 22 20 39 39 H 1.09000 * 109.46724 * 54.88791 * 23 22 20 40 40 H 1.09002 * 109.46714 * 294.89040 * 23 22 20 41 41 H 1.08999 * 109.36156 * 103.33600 * 24 22 20 42 42 H 1.09010 * 109.35167 * 223.05574 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5989 1.5451 0.1937 11 1 6.4000 1.6154 2.6093 12 1 6.4962 -0.5191 1.4627 13 8 1.6560 2.0917 -1.2407 14 6 0.4729 2.7255 -1.2559 15 8 -0.2191 2.7370 -0.2656 16 6 0.0072 3.4218 -2.5087 17 1 0.7186 4.2016 -2.7804 18 6 -1.3753 4.0437 -2.2746 19 6 -1.7378 4.8913 -3.4961 20 6 -1.5187 4.1055 -4.7556 21 6 -2.1696 4.6024 -6.0207 22 6 -0.8089 3.0251 -4.8222 23 6 -0.6760 2.3483 -6.1622 24 6 -0.1051 2.4078 -3.6493 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0605 2.9503 31 1 -2.1151 3.2538 -2.1442 32 1 -1.3487 4.6715 -1.3840 33 1 -2.7841 5.1897 -3.4311 34 1 -1.1089 5.7813 -3.5177 35 1 -2.0024 3.8828 -6.8222 36 1 -3.2406 4.7204 -5.8561 37 1 -1.7367 5.5632 -6.2989 38 1 0.0181 1.5120 -6.0795 39 1 -0.2990 3.0626 -6.8941 40 1 -1.6512 1.9810 -6.4819 41 1 -0.6675 1.5392 -3.3066 42 1 0.8944 2.0948 -3.9515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842771686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:45 Heat of formation + Delta-G solvation = -105.371653 kcal Electronic energy + Delta-G solvation = -21022.780387 eV Core-core repulsion = 17966.933360 eV Total energy + Delta-G solvation = -3055.847026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.09045 -38.57745 -35.79938 -33.62852 -33.35996 -31.78672 -31.29440 -27.82070 -27.04730 -26.46858 -23.48973 -23.03763 -22.23502 -20.21174 -19.21011 -17.23556 -16.86173 -16.46667 -15.55615 -15.23299 -14.87950 -14.61875 -14.47989 -13.96212 -13.74363 -13.19216 -12.94189 -12.79855 -12.56547 -12.23953 -12.03602 -11.90667 -11.70222 -11.66600 -11.42010 -11.31679 -11.12546 -10.95670 -10.83062 -10.65782 -10.58866 -10.25452 -10.22343 -9.76514 -9.43799 -9.29313 -8.76854 -8.51322 -8.43798 -6.17099 -4.23894 2.16730 3.07373 3.24004 3.30916 3.35753 3.72465 4.34389 4.64327 4.68845 5.00341 5.06877 5.15041 5.25841 5.31326 5.43203 5.43529 5.51187 5.53910 5.65889 5.70863 5.79844 5.90799 5.92326 5.98636 6.03118 6.13316 6.24165 6.25019 6.32220 6.39023 6.48859 6.65719 6.89776 6.99808 7.06057 7.19510 7.30452 7.64183 7.76561 7.98940 8.18895 8.68693 8.94032 9.41524 10.89712 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.004510 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.418847 B = 6207.600651 C = 6414.811239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.355 6.355 14 C 0.456 3.544 15 O -0.517 6.517 16 C -0.082 4.082 17 H 0.102 0.898 18 C -0.102 4.102 19 C -0.078 4.078 20 C -0.138 4.138 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.070 4.070 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.108 0.892 30 H 0.265 0.735 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 5.694 -13.979 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.271 6.271 14 C 0.298 3.702 15 O -0.407 6.407 16 C -0.101 4.101 17 H 0.120 0.880 18 C -0.139 4.139 19 C -0.115 4.115 20 C -0.138 4.138 21 C -0.183 4.183 22 C -0.121 4.121 23 C -0.175 4.175 24 C -0.107 4.107 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.294 5.564 -13.490 17.301 hybrid contribution 0.905 -0.111 0.334 0.971 sum -8.390 5.453 -13.156 16.529 Atomic orbital electron populations 1.21858 0.98410 0.98911 1.00764 1.22006 0.92598 0.99415 1.03281 1.20654 0.94959 0.88771 0.78862 0.93626 1.21096 0.89778 1.38744 1.06173 0.91331 1.24886 0.99184 0.94809 0.95094 1.69907 1.35244 1.37992 1.09459 0.86249 0.84010 0.77867 0.78200 1.19493 1.20778 1.20723 1.86475 1.34337 1.62380 1.43903 1.23225 0.80719 0.76895 0.89314 1.90592 1.55604 1.58496 1.36012 1.21058 0.98624 0.98453 0.91991 0.87987 1.21470 0.94920 0.99767 0.97760 1.20352 1.01597 0.97854 0.91701 1.20670 1.00030 0.96957 0.96121 1.21062 1.00068 1.01419 0.95743 1.20675 0.99033 0.96450 0.95902 1.20943 1.01785 1.00272 0.94522 1.20324 1.01338 0.97276 0.91787 0.94892 0.92858 0.94926 0.94034 0.87417 0.92488 0.91123 0.90512 0.90888 0.90975 0.91326 0.92118 0.91990 0.92004 0.91670 0.91772 0.90492 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.57 37.16 0.32 -2.83 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.89 2.25 -27.88 -0.06 5.83 16 4 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 5 C -0.52 -14.63 8.90 -34.44 -0.31 -14.94 16 6 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.20 11.29 55.43 0.63 -24.58 16 9 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 O -0.35 -8.44 9.74 -39.25 -0.38 -8.82 16 14 C 0.46 9.49 5.70 36.01 0.21 9.70 16 15 O -0.52 -11.98 13.05 -18.75 -0.24 -12.22 16 16 C -0.08 -1.28 2.68 -91.55 -0.25 -1.52 16 17 H 0.10 1.49 8.12 -51.93 -0.42 1.07 16 18 C -0.10 -1.40 4.72 -26.51 -0.13 -1.52 16 19 C -0.08 -0.85 5.81 -28.18 -0.16 -1.02 16 20 C -0.14 -1.51 5.84 -100.94 -0.59 -2.10 16 21 C -0.13 -1.09 9.62 36.01 0.35 -0.74 16 22 C -0.12 -1.42 5.84 -100.94 -0.59 -2.01 16 23 C -0.12 -1.14 8.35 36.01 0.30 -0.84 16 24 C -0.07 -0.98 4.94 -28.18 -0.14 -1.12 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 1.24 7.80 -51.93 -0.40 0.84 16 27 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16 28 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 32 H 0.08 1.10 7.90 -51.93 -0.41 0.69 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.54 5.22 -51.93 -0.27 0.27 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.59 7.93 -51.93 -0.41 0.18 16 39 H 0.06 0.56 7.34 -51.93 -0.38 0.18 16 40 H 0.06 0.55 7.68 -51.93 -0.40 0.16 16 41 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 42 H 0.09 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -29.86 329.40 -8.39 -38.25 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.04 Total: 1.34 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -1.29 Total: -15.03 kcal Atomic # 7 Polarization: -25.20 SS G_CDS: 0.63 Total: -24.58 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.63 Total: -21.04 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.86 -8.39 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.123 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds