Wall clock time and date at job start Mon Mar 30 2020 00:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47450 * 2 1 4 4 H 1.08996 * 109.47187 * 54.99913 * 3 2 1 5 5 C 1.50703 * 109.47286 * 174.99820 * 3 2 1 6 6 H 1.08005 * 119.99972 * 119.99757 * 5 3 2 7 7 C 1.37876 * 120.00151 * 300.00200 * 5 3 2 8 8 N 1.31518 * 119.99762 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00034 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47207 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46785 * 120.00245 * 9 7 5 12 12 H 1.48493 * 109.47269 * 239.99993 * 9 7 5 13 13 O 1.45205 * 109.47325 * 294.99998 * 3 2 1 14 14 C 1.34227 * 116.99676 * 89.99909 * 13 3 2 15 15 O 1.20822 * 120.00356 * 359.97438 * 14 13 3 16 16 C 1.50708 * 119.99545 * 180.02562 * 14 13 3 17 17 H 1.08997 * 109.63749 * 299.57815 * 16 14 13 18 18 C 1.53390 * 109.81317 * 179.04807 * 16 14 13 19 19 C 1.53030 * 108.43493 * 172.77629 * 18 16 14 20 20 C 1.50057 * 110.20082 * 49.24725 * 19 18 16 21 21 C 1.50704 * 117.96162 * 163.08648 * 20 19 18 22 22 C 1.29447 * 124.08094 * 343.31833 * 20 19 18 23 23 C 1.50699 * 117.96580 * 180.23516 * 22 20 19 24 24 C 1.50071 * 124.06984 * 359.95932 * 22 20 19 25 25 H 1.08996 * 109.47539 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46661 * 300.00274 * 1 2 3 27 27 H 1.09000 * 109.46571 * 59.99611 * 1 2 3 28 28 H 1.09000 * 109.47080 * 240.00052 * 2 1 3 29 29 H 1.09000 * 109.46969 * 120.00026 * 2 1 3 30 30 H 0.97004 * 119.99806 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.64525 * 292.45854 * 18 16 14 32 32 H 1.09003 * 109.64468 * 52.88250 * 18 16 14 33 33 H 1.09001 * 109.35539 * 169.64730 * 19 18 16 34 34 H 1.09004 * 109.35639 * 289.36360 * 19 18 16 35 35 H 1.08995 * 109.47395 * 185.47284 * 21 20 19 36 36 H 1.08994 * 109.47101 * 305.47364 * 21 20 19 37 37 H 1.09000 * 109.47099 * 65.47377 * 21 20 19 38 38 H 1.08996 * 109.46685 * 174.88906 * 23 22 20 39 39 H 1.09000 * 109.46724 * 54.88791 * 23 22 20 40 40 H 1.09002 * 109.46714 * 294.89040 * 23 22 20 41 41 H 1.08999 * 109.36156 * 103.33600 * 24 22 20 42 42 H 1.09010 * 109.35167 * 223.05574 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1474 1.8887 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5989 1.5451 0.1937 11 1 6.4000 1.6154 2.6093 12 1 6.4962 -0.5191 1.4627 13 8 1.6560 2.0917 -1.2407 14 6 0.4729 2.7255 -1.2559 15 8 -0.2191 2.7370 -0.2656 16 6 0.0072 3.4218 -2.5087 17 1 0.7186 4.2016 -2.7804 18 6 -1.3753 4.0437 -2.2746 19 6 -1.7378 4.8913 -3.4961 20 6 -1.5187 4.1055 -4.7556 21 6 -2.1696 4.6024 -6.0207 22 6 -0.8089 3.0251 -4.8222 23 6 -0.6760 2.3483 -6.1622 24 6 -0.1051 2.4078 -3.6493 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8292 -0.0605 2.9503 31 1 -2.1151 3.2538 -2.1442 32 1 -1.3487 4.6715 -1.3840 33 1 -2.7841 5.1897 -3.4311 34 1 -1.1089 5.7813 -3.5177 35 1 -2.0024 3.8828 -6.8222 36 1 -3.2406 4.7204 -5.8561 37 1 -1.7367 5.5632 -6.2989 38 1 0.0181 1.5120 -6.0795 39 1 -0.2990 3.0626 -6.8941 40 1 -1.6512 1.9810 -6.4819 41 1 -0.6675 1.5392 -3.3066 42 1 0.8944 2.0948 -3.9515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842771686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:22:44 Heat of formation + Delta-G solvation = -119.718973 kcal Electronic energy + Delta-G solvation = -21023.402533 eV Core-core repulsion = 17966.933360 eV Total energy + Delta-G solvation = -3056.469173 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.167 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.67542 -39.79877 -37.63664 -35.52255 -34.60153 -33.35467 -32.69595 -29.45984 -28.35892 -27.44795 -25.35776 -24.20066 -23.55510 -21.97400 -20.92108 -18.88354 -18.59117 -17.98959 -17.25632 -16.76883 -16.45838 -15.80989 -15.53363 -15.20265 -14.86698 -14.73832 -14.52913 -14.32766 -13.70684 -13.39381 -13.32537 -13.24210 -13.15663 -13.05181 -12.83101 -12.79736 -12.72093 -12.55788 -12.37124 -12.13958 -11.94930 -11.78442 -11.75114 -11.40045 -11.31100 -10.94944 -10.82343 -10.53446 -9.36419 -8.28477 -6.45399 1.30207 1.37849 1.40917 1.41506 1.55218 2.04802 2.41873 3.01014 3.54423 3.69111 3.83984 4.09608 4.15927 4.29889 4.33602 4.34856 4.37700 4.52337 4.53346 4.57293 4.66961 4.81410 4.84599 4.88859 4.93057 4.96870 5.03025 5.06291 5.08391 5.18472 5.20096 5.25498 5.26570 5.28994 5.38342 5.51060 5.66025 5.80884 5.97777 6.13907 6.19977 6.60094 7.01470 7.27004 8.78545 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.029547 B = 0.004510 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.418847 B = 6207.600651 C = 6414.811239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.224 3.776 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.271 1.271 13 O -0.363 6.363 14 C 0.450 3.550 15 O -0.544 6.544 16 C -0.075 4.075 17 H 0.115 0.885 18 C -0.098 4.098 19 C -0.075 4.075 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.139 4.139 23 C -0.115 4.115 24 C -0.066 4.066 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.270 0.730 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 6.325 -15.984 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.188 1.188 11 H -0.201 1.201 12 H -0.196 1.196 13 O -0.279 6.279 14 C 0.294 3.706 15 O -0.435 6.435 16 C -0.094 4.094 17 H 0.133 0.867 18 C -0.135 4.135 19 C -0.111 4.111 20 C -0.134 4.134 21 C -0.181 4.181 22 C -0.139 4.139 23 C -0.171 4.171 24 C -0.103 4.103 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.439 6.201 -15.512 19.188 hybrid contribution 0.878 -0.263 1.004 1.359 sum -8.561 5.938 -14.509 17.862 Atomic orbital electron populations 1.21707 0.96337 1.00542 1.00034 1.21850 0.94402 0.98112 1.02288 1.20358 0.94531 0.89313 0.78762 0.97781 1.21367 0.90564 1.39912 1.06890 0.91731 1.25805 1.04255 0.93842 0.94325 1.70025 1.37374 1.38003 1.09855 0.85166 0.77696 0.78366 0.78369 1.18825 1.20128 1.19585 1.86473 1.36113 1.62971 1.42342 1.24350 0.79362 0.76066 0.90803 1.90574 1.55968 1.59377 1.37564 1.21211 0.99800 0.98651 0.89715 0.86688 1.21463 0.93315 0.99659 0.99112 1.20381 1.03045 0.97577 0.90140 1.20926 0.99076 0.96280 0.97071 1.21092 1.00456 1.02075 0.94495 1.20660 0.99948 0.97416 0.95830 1.20938 1.02410 1.00281 0.93510 1.20261 1.01333 0.96556 0.92121 0.91983 0.94695 0.94467 0.93577 0.89602 0.92041 0.92118 0.91526 0.88911 0.89729 0.90453 0.91089 0.90893 0.92515 0.90313 0.90641 0.91745 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.57 71.98 0.62 -5.19 16 2 C -0.13 -6.62 5.49 30.59 0.17 -6.45 16 3 C 0.22 12.46 2.25 29.85 0.07 12.53 16 4 H 0.00 0.28 7.16 -2.39 -0.02 0.26 16 5 C -0.55 -31.76 8.90 25.60 0.23 -31.53 16 6 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.91 -52.95 11.29 21.45 0.24 -52.71 16 9 Si 0.98 43.33 29.54 68.60 2.03 45.36 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 13 O -0.36 -17.84 9.74 -51.39 -0.50 -18.34 16 14 C 0.45 19.30 5.70 71.24 0.41 19.70 16 15 O -0.54 -26.21 13.05 21.98 0.29 -25.93 16 16 C -0.07 -2.32 2.68 -11.40 -0.03 -2.35 16 17 H 0.12 3.29 8.12 -2.39 -0.02 3.27 16 18 C -0.10 -2.63 4.72 30.73 0.14 -2.48 16 19 C -0.07 -1.45 5.81 29.66 0.17 -1.28 16 20 C -0.13 -2.56 5.84 -15.10 -0.09 -2.65 16 21 C -0.12 -1.69 9.62 71.24 0.69 -1.00 16 22 C -0.14 -3.00 5.84 -15.10 -0.09 -3.09 16 23 C -0.11 -1.94 8.35 71.24 0.60 -1.35 16 24 C -0.07 -1.81 4.94 29.66 0.15 -1.66 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.03 1.67 7.80 -2.39 -0.02 1.65 16 27 H 0.04 1.60 6.06 -2.39 -0.01 1.59 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 29 H 0.09 4.81 5.95 -2.39 -0.01 4.80 16 30 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 32 H 0.07 1.91 7.90 -2.39 -0.02 1.89 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.08 0.93 5.22 -2.39 -0.01 0.91 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 1.00 7.93 -2.39 -0.02 0.98 16 39 H 0.08 1.11 7.34 -2.39 -0.02 1.09 16 40 H 0.07 1.10 7.68 -2.39 -0.02 1.08 16 41 H 0.06 1.91 8.10 -2.39 -0.02 1.89 16 42 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -65.95 329.40 6.51 -59.44 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.98 Total: 17.56 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 3.47 Total: -25.38 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.24 Total: -52.71 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -0.21 Total: -44.26 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -65.95 6.51 -59.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842771686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.279 kcal (2) G-P(sol) polarization free energy of solvation -65.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds