Wall clock time and date at job start Mon Mar 30 2020 00:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47213 * 332.44603 * 3 2 1 5 5 N 1.46892 * 109.47107 * 179.97438 * 4 3 2 6 6 C 1.46956 * 111.00247 * 293.80185 * 5 4 3 7 7 C 1.53051 * 109.36299 * 176.81173 * 6 5 4 8 8 N 1.46953 * 109.36629 * 58.40511 * 7 6 5 9 9 C 1.46903 * 110.99991 * 176.81373 * 8 7 6 10 10 C 1.53001 * 109.46745 * 199.50338 * 9 8 7 11 11 O 1.42901 * 109.47383 * 64.64355 * 10 9 8 12 12 C 1.42904 * 114.00122 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.46959 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99921 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99647 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00072 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46932 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47245 * 119.99467 * 17 15 13 20 20 H 1.48503 * 109.46834 * 239.99692 * 17 15 13 21 21 C 1.46956 * 110.87708 * 300.67665 * 8 7 6 22 22 C 1.46960 * 110.99904 * 170.00225 * 5 4 3 23 23 H 4.44655 * 5.63305 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.47097 * 92.44748 * 3 2 1 25 25 H 1.09007 * 109.46917 * 212.45241 * 3 2 1 26 26 H 1.09004 * 109.47385 * 300.00825 * 4 3 2 27 27 H 1.09004 * 109.47070 * 60.00203 * 4 3 2 28 28 H 1.09001 * 109.48855 * 296.77901 * 6 5 4 29 29 H 1.09004 * 109.48773 * 56.84487 * 6 5 4 30 30 H 1.09004 * 109.49140 * 298.42924 * 7 6 5 31 31 H 1.08998 * 109.48690 * 178.36933 * 7 6 5 32 32 H 1.09001 * 109.46885 * 319.49585 * 9 8 7 33 33 H 1.08994 * 109.47775 * 79.50170 * 9 8 7 34 34 H 1.09007 * 109.46829 * 184.63937 * 10 9 8 35 35 H 1.08993 * 109.47255 * 304.63993 * 10 9 8 36 36 H 1.09002 * 109.46769 * 300.00062 * 12 11 10 37 37 H 1.08998 * 109.47020 * 60.00037 * 12 11 10 38 38 H 0.96999 * 119.99654 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.49290 * 299.35134 * 21 8 7 40 40 H 1.09004 * 109.48773 * 179.28825 * 21 8 7 41 41 H 1.08998 * 109.48914 * 303.15745 * 22 5 4 42 42 H 1.08995 * 109.48796 * 63.22603 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2780 0.6673 5 7 4.6256 -1.2776 0.6667 6 6 5.1518 -1.3674 -0.7025 7 6 6.6796 -1.2841 -0.6654 8 7 7.2068 -2.3715 0.1706 9 6 8.6758 -2.3710 0.1702 10 6 9.1863 -3.7424 0.6170 11 8 8.8011 -4.7297 -0.3416 12 6 9.2314 -6.0534 -0.0177 13 6 8.7734 -7.0071 -1.0910 14 1 8.2099 -6.6392 -1.9356 15 6 9.0731 -8.3494 -0.9940 16 7 9.7590 -8.7973 0.0348 17 14 8.5049 -9.5317 -2.3239 18 1 7.7565 -8.7828 -3.3652 19 1 9.6856 -10.1894 -2.9390 20 1 7.6202 -10.5629 -1.7244 21 6 6.6806 -2.2817 1.5398 22 6 5.1528 -2.3651 1.5029 23 1 -1.0498 -0.0002 0.0003 24 1 3.0094 0.0447 -1.0267 25 1 3.0090 0.8681 0.5515 26 1 2.7932 -1.3221 1.6940 27 1 2.7937 -2.1454 0.1159 28 1 4.8500 -2.3160 -1.1465 29 1 4.7570 -0.5446 -1.2985 30 1 6.9814 -0.3241 -0.2465 31 1 7.0736 -1.3796 -1.6772 32 1 9.0387 -2.1583 -0.8354 33 1 9.0392 -1.6067 0.8569 34 1 10.2732 -3.7174 0.6961 35 1 8.7571 -3.9913 1.5875 36 1 10.3192 -6.0759 0.0479 37 1 8.8034 -6.3505 0.9396 38 1 9.9701 -9.7416 0.1029 39 1 6.9824 -1.3331 1.9840 40 1 7.0754 -3.1045 2.1358 41 1 4.7588 -2.2695 2.5147 42 1 4.8511 -3.3249 1.0838 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815077458.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:19 Heat of formation + Delta-G solvation = -7.494845 kcal Electronic energy + Delta-G solvation = -19981.805613 eV Core-core repulsion = 16962.495594 eV Total energy + Delta-G solvation = -3019.310018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44020 -38.60705 -37.06722 -35.03790 -34.65792 -31.97237 -31.80065 -30.10578 -28.82095 -26.66735 -24.59594 -24.43115 -23.49944 -22.34426 -20.73975 -18.98319 -18.61876 -17.59100 -17.37165 -16.66259 -16.33488 -16.30351 -15.79471 -15.70097 -15.63320 -15.21777 -15.03372 -14.55055 -14.07256 -13.74486 -13.66543 -13.40478 -13.05039 -12.94388 -12.70951 -12.67325 -12.53649 -12.27487 -12.21909 -12.07518 -11.70565 -11.57878 -11.22677 -11.09358 -10.92515 -10.85394 -10.16121 -9.44907 -9.12332 -8.31970 -6.43672 1.38903 1.40589 1.55464 1.84137 1.92613 2.34998 2.82218 2.94484 3.01543 3.27320 3.63539 3.90313 3.95279 4.07945 4.17093 4.24134 4.29626 4.41319 4.45682 4.47653 4.53741 4.58582 4.61212 4.68964 4.81975 4.83813 4.91231 4.96765 4.98104 5.00633 5.02493 5.12525 5.20000 5.20829 5.55915 5.93329 5.94978 5.98634 6.19936 6.24236 6.58347 6.71315 6.88210 7.28769 8.80739 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.003554 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.688311 B = 7877.539732 C = 8747.583935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.218 4.218 3 C -0.004 4.004 4 C 0.064 3.936 5 N -0.535 5.535 6 C 0.055 3.945 7 C 0.062 3.938 8 N -0.557 5.557 9 C 0.072 3.928 10 C 0.059 3.941 11 O -0.395 6.395 12 C 0.210 3.790 13 C -0.543 4.543 14 H 0.058 0.942 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.270 1.270 20 H -0.271 1.271 21 C 0.061 3.939 22 C 0.061 3.939 23 H 0.243 0.757 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.026 0.974 28 H 0.023 0.977 29 H 0.104 0.896 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.035 0.965 36 H -0.016 1.016 37 H -0.020 1.020 38 H 0.270 0.730 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 19.521 1.968 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.219 4.219 3 C -0.041 4.041 4 C -0.064 4.064 5 N -0.260 5.260 6 C -0.073 4.073 7 C -0.065 4.065 8 N -0.283 5.283 9 C -0.056 4.056 10 C -0.018 4.018 11 O -0.315 6.315 12 C 0.135 3.865 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.195 1.195 20 H -0.197 1.197 21 C -0.067 4.067 22 C -0.067 4.067 23 H 0.260 0.740 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.101 0.899 27 H 0.044 0.956 28 H 0.041 0.959 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.002 0.998 37 H -0.002 1.002 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -12.440 19.412 1.884 23.133 hybrid contribution 0.038 -1.109 -0.037 1.111 sum -12.402 18.302 1.846 22.185 Atomic orbital electron populations 1.25704 0.96922 0.99603 1.00169 1.23523 0.95321 1.01624 1.01390 1.18653 0.83939 0.98888 1.02571 1.21979 0.86634 0.96337 1.01402 1.62224 1.07380 1.45106 1.11271 1.22266 0.94535 1.00806 0.89728 1.22156 0.94408 0.92172 0.97799 1.61944 1.07756 1.46760 1.11827 1.22022 0.87250 0.93923 1.02370 1.22583 0.97533 0.89668 0.92056 1.87891 1.78679 1.17252 1.47671 1.19770 0.92349 0.79546 0.94859 1.21400 1.35898 0.92839 1.07979 0.92331 1.25968 0.94782 0.99742 0.98851 1.70078 1.39913 1.15857 1.31268 0.85140 0.78396 0.77734 0.78156 1.18956 1.19462 1.19667 1.22145 0.94457 1.00634 0.89480 1.22117 0.94441 0.91876 0.98305 0.74043 0.88965 0.87946 0.89946 0.95552 0.95897 0.87832 0.92996 0.90236 0.90203 0.90883 0.93545 0.94720 0.99842 1.00215 0.92073 0.92900 0.91446 0.88610 0.96060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.26 19.25 74.32 1.43 -1.83 16 2 C -0.22 -3.99 13.34 31.13 0.42 -3.58 16 3 C 0.00 -0.06 5.64 28.79 0.16 0.10 16 4 C 0.06 1.22 4.91 86.30 0.42 1.64 16 5 N -0.54 -11.47 4.71 -895.72 -4.22 -15.69 16 6 C 0.05 1.21 5.41 86.31 0.47 1.68 16 7 C 0.06 1.49 5.57 86.31 0.48 1.97 16 8 N -0.56 -16.67 4.58 -895.71 -4.11 -20.77 16 9 C 0.07 2.11 5.39 86.30 0.46 2.58 16 10 C 0.06 2.25 6.13 71.98 0.44 2.69 16 11 O -0.40 -20.11 10.27 -148.98 -1.53 -21.64 16 12 C 0.21 12.24 5.69 71.24 0.41 12.65 16 13 C -0.54 -33.47 9.43 25.60 0.24 -33.23 16 14 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 15 C 0.00 0.28 5.46 84.66 0.46 0.74 16 16 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 17 Si 0.98 45.47 29.54 68.60 2.03 47.49 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 C 0.06 1.60 5.43 86.31 0.47 2.06 16 22 C 0.06 1.48 5.61 86.31 0.48 1.97 16 23 H 0.24 1.99 7.80 -4.43 -0.03 1.95 16 24 H 0.09 1.36 6.49 -2.39 -0.02 1.34 16 25 H 0.10 1.47 8.14 -2.38 -0.02 1.46 16 26 H 0.08 1.48 8.03 -2.39 -0.02 1.46 16 27 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.10 1.75 6.34 -2.39 -0.02 1.74 16 30 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.08 1.88 8.00 -2.39 -0.02 1.86 16 32 H 0.08 2.32 7.85 -2.39 -0.02 2.31 16 33 H 0.07 1.70 8.00 -2.39 -0.02 1.68 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.66 16 35 H 0.03 1.31 6.74 -2.39 -0.02 1.30 16 36 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.93 6.72 -2.39 -0.02 1.92 16 41 H 0.10 1.94 8.07 -2.39 -0.02 1.92 16 42 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -71.03 344.37 -0.24 -71.27 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.96 Total: 6.78 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 6.35 Total: -10.55 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -8.04 Total: -93.35 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -1.53 Total: -21.64 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -71.03 -0.24 -71.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815077458.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.775 kcal (2) G-P(sol) polarization free energy of solvation -71.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds