Wall clock time and date at job start Mon Mar 30 2020 00:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47399 * 2 1 4 4 C 1.50694 * 109.47116 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99914 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00155 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00068 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.32368 * 35.35788 * 7 6 4 9 9 C 1.53033 * 109.32451 * 155.00337 * 7 6 4 10 10 C 1.53970 * 108.83057 * 175.50158 * 9 7 6 11 11 H 1.08997 * 112.99427 * 169.00941 * 10 9 7 12 12 C 1.55429 * 106.41057 * 293.82367 * 10 9 7 13 13 C 1.55172 * 100.35775 * 74.23929 * 12 10 9 14 14 H 1.08999 * 112.48739 * 162.66397 * 13 12 10 15 15 C 1.53880 * 107.25893 * 286.72181 * 13 12 10 16 16 N 1.47791 * 104.25035 * 40.54316 * 13 12 10 17 17 C 1.36945 * 125.85162 * 153.54392 * 16 13 12 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 13 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 13 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47078 * 108.29372 * 333.80724 * 16 13 12 26 26 H 1.09001 * 109.46902 * 300.00326 * 1 2 3 27 27 H 1.09003 * 109.46814 * 59.99712 * 1 2 3 28 28 H 1.08993 * 109.47419 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46902 * 239.99674 * 2 1 3 30 30 H 1.09003 * 109.46814 * 120.00288 * 2 1 3 31 31 H 1.09001 * 109.47359 * 59.99954 * 3 2 1 32 32 H 1.09006 * 109.46976 * 300.00261 * 3 2 1 33 33 H 0.96996 * 119.99734 * 0.02562 * 6 4 3 34 34 H 1.08995 * 109.57538 * 55.69307 * 9 7 6 35 35 H 1.08995 * 109.68102 * 295.36883 * 9 7 6 36 36 H 1.08999 * 111.23841 * 316.45396 * 12 10 9 37 37 H 1.09006 * 111.23262 * 192.01045 * 12 10 9 38 38 H 1.08998 * 109.53309 * 185.71312 * 15 13 12 39 39 H 1.08997 * 109.53676 * 305.94165 * 15 13 12 40 40 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.97515 * 120.19260 * 25 16 13 42 42 H 1.09001 * 109.97644 * 241.47965 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2210 2.6095 -0.0013 7 6 5.6861 2.6094 -0.0013 8 1 6.0467 1.7702 -0.5961 9 6 6.1925 3.9179 -0.6122 10 6 7.7279 3.9555 -0.5037 11 1 8.1761 4.7623 -1.0836 12 6 8.0592 4.0345 1.0128 13 6 7.7446 2.5772 1.4433 14 1 8.1878 2.3220 2.4058 15 6 6.2137 2.4216 1.4436 16 7 8.2754 1.7493 0.3401 17 6 8.7019 0.4522 0.4442 18 1 8.6666 -0.0529 1.3981 19 6 9.1796 -0.2134 -0.6763 20 7 9.2232 0.4024 -1.8388 21 14 9.7621 -1.9826 -0.5341 22 1 10.2202 -2.4612 -1.8630 23 1 10.8857 -2.0575 0.4339 24 1 8.6428 -2.8356 -0.0602 25 6 8.2729 2.5594 -0.8875 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7361 3.4496 -0.0009 34 1 5.7672 4.7626 -0.0704 35 1 5.8990 3.9714 -1.6606 36 1 7.4093 4.7458 1.5224 37 1 9.1096 4.2761 1.1754 38 1 5.9471 1.4413 1.8385 39 1 5.7684 3.1991 2.0644 40 1 9.5574 -0.0627 -2.6217 41 1 9.2868 2.6475 -1.2776 42 1 7.6245 2.1015 -1.6345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500994818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:34 Heat of formation + Delta-G solvation = -24.116205 kcal Electronic energy + Delta-G solvation = -21489.177673 eV Core-core repulsion = 18469.146899 eV Total energy + Delta-G solvation = -3020.030775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93023 -38.62363 -34.64391 -34.11201 -32.74665 -30.64348 -29.79282 -28.52094 -27.23530 -25.26518 -23.09014 -22.45208 -21.05863 -19.92854 -19.35497 -18.54346 -16.98485 -16.58034 -15.82950 -15.61851 -14.59990 -14.42931 -14.06040 -13.74241 -13.52135 -13.02725 -12.96958 -12.67935 -12.21910 -11.87602 -11.80059 -11.68751 -11.65511 -11.48079 -11.19920 -11.17400 -10.73210 -10.68101 -10.61824 -10.44366 -9.95081 -9.82180 -9.68841 -9.61236 -9.34806 -9.20077 -8.49429 -8.45528 -6.72454 -5.59160 -2.91185 3.06932 3.50568 3.54740 3.56139 3.57648 4.61454 4.88506 4.94619 5.00533 5.24538 5.28112 5.41391 5.45429 5.49754 5.58179 5.63580 5.67392 5.73200 5.90090 5.93541 5.98016 6.09585 6.11620 6.15499 6.16391 6.20182 6.26901 6.34507 6.60831 6.66610 6.75233 6.92301 6.95805 7.03623 7.14836 7.66772 7.67535 7.91520 7.95346 8.36370 8.70197 9.33919 9.94318 10.60400 11.52958 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.006748 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.243959 B = 4148.140177 C = 5361.282113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.501 3.499 5 O -0.525 6.525 6 N -0.730 5.730 7 C 0.142 3.858 8 H 0.110 0.890 9 C -0.108 4.108 10 C -0.119 4.119 11 H 0.080 0.920 12 C -0.128 4.128 13 C 0.156 3.844 14 H 0.063 0.937 15 C -0.131 4.131 16 N -0.595 5.595 17 C -0.220 4.220 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.924 5.924 21 Si 0.909 3.091 22 H -0.291 1.291 23 H -0.287 1.287 24 H -0.285 1.285 25 C 0.182 3.818 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.389 0.611 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.038 0.962 40 H 0.251 0.749 41 H 0.044 0.956 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.592 8.767 3.515 16.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.286 3.714 5 O -0.400 6.400 6 N -0.381 5.381 7 C 0.039 3.961 8 H 0.128 0.872 9 C -0.146 4.146 10 C -0.139 4.139 11 H 0.098 0.902 12 C -0.166 4.166 13 C 0.048 3.952 14 H 0.081 0.919 15 C -0.172 4.172 16 N -0.320 5.320 17 C -0.349 4.349 18 H 0.093 0.907 19 C -0.203 4.203 20 N -0.572 5.572 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.213 1.213 24 H -0.212 1.212 25 C 0.058 3.942 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.222 0.778 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.044 7.787 3.339 15.554 hybrid contribution -0.020 -0.467 0.017 0.468 sum -13.064 7.320 3.356 15.347 Atomic orbital electron populations 1.21790 0.95825 1.01743 1.01478 1.21278 0.94815 0.95038 1.03773 1.21704 0.92694 0.99836 1.03697 1.20691 0.89906 0.84170 0.76612 1.90800 1.70199 1.31043 1.47953 1.46228 1.08198 1.07865 1.75777 1.21448 0.76836 0.99717 0.98104 0.87245 1.21883 0.96727 0.96043 0.99951 1.22832 0.93865 1.00738 0.96450 0.90152 1.22981 1.00406 0.97248 0.96007 1.21510 0.90948 0.89889 0.92889 0.91889 1.22890 0.98754 1.00297 0.95256 1.44599 1.73917 1.09994 1.03466 1.18969 1.34407 0.86559 0.94922 0.90691 1.24722 1.01758 0.98204 0.95571 1.69933 1.52458 1.35821 0.99024 0.86238 0.78456 0.84897 0.76466 1.21722 1.21338 1.21178 1.21266 0.99225 0.84885 0.88862 0.92883 0.92856 0.92565 0.91169 0.91231 0.89477 0.89444 0.77807 0.92845 0.92165 0.92287 0.91878 0.92083 0.94322 0.93902 0.93821 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.11 -1.34 5.22 -26.73 -0.14 -1.48 16 3 C -0.14 -1.59 5.70 -27.89 -0.16 -1.74 16 4 C 0.50 8.34 7.78 -10.99 -0.09 8.26 16 5 O -0.52 -11.78 15.65 5.55 0.09 -11.70 16 6 N -0.73 -11.07 5.11 -52.78 -0.27 -11.34 16 7 C 0.14 2.67 2.08 -66.87 -0.14 2.53 16 8 H 0.11 2.71 5.51 -51.93 -0.29 2.43 16 9 C -0.11 -1.74 5.01 -26.21 -0.13 -1.87 16 10 C -0.12 -2.17 4.26 -87.93 -0.37 -2.55 16 11 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 12 C -0.13 -2.23 6.18 -24.29 -0.15 -2.38 16 13 C 0.16 3.25 4.25 -65.61 -0.28 2.97 16 14 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.13 -2.52 5.45 -25.23 -0.14 -2.66 16 16 N -0.60 -15.26 2.46 -161.38 -0.40 -15.66 16 17 C -0.22 -6.35 10.29 -15.06 -0.16 -6.50 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.98 10.35 55.49 0.57 -27.40 16 21 Si 0.91 23.35 29.55 -169.99 -5.02 18.33 16 22 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 C 0.18 4.42 4.11 -2.83 -0.01 4.41 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.39 4.34 8.60 -40.82 -0.35 3.99 16 34 H 0.05 0.71 7.97 -51.93 -0.41 0.30 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.87 7.76 -51.93 -0.40 0.46 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.04 0.63 8.02 -51.93 -0.42 0.22 16 40 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 42 H 0.05 1.24 6.23 -51.93 -0.32 0.91 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -33.53 325.45 -8.81 -42.34 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.19 Total: 2.82 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.49 Total: -2.29 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: -0.09 Total: -54.41 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.53 -8.81 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500994818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.220 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds