Wall clock time and date at job start Mon Mar 30 2020 00:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47399 * 2 1 4 4 C 1.50694 * 109.47116 * 180.02562 * 3 2 1 5 5 O 1.21285 * 119.99914 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00155 * 179.97438 * 4 3 2 7 7 C 1.46502 * 120.00068 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.32368 * 35.35788 * 7 6 4 9 9 C 1.53033 * 109.32451 * 155.00337 * 7 6 4 10 10 C 1.53970 * 108.83057 * 175.50158 * 9 7 6 11 11 H 1.08997 * 112.99427 * 169.00941 * 10 9 7 12 12 C 1.55429 * 106.41057 * 293.82367 * 10 9 7 13 13 C 1.55172 * 100.35775 * 74.23929 * 12 10 9 14 14 H 1.08999 * 112.48739 * 162.66397 * 13 12 10 15 15 C 1.53880 * 107.25893 * 286.72181 * 13 12 10 16 16 N 1.47791 * 104.25035 * 40.54316 * 13 12 10 17 17 C 1.36945 * 125.85162 * 153.54392 * 16 13 12 18 18 H 1.07997 * 119.99756 * 359.97438 * 17 16 13 19 19 C 1.38805 * 119.99878 * 179.97438 * 17 16 13 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47078 * 108.29372 * 333.80724 * 16 13 12 26 26 H 1.09001 * 109.46902 * 300.00326 * 1 2 3 27 27 H 1.09003 * 109.46814 * 59.99712 * 1 2 3 28 28 H 1.08993 * 109.47419 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46902 * 239.99674 * 2 1 3 30 30 H 1.09003 * 109.46814 * 120.00288 * 2 1 3 31 31 H 1.09001 * 109.47359 * 59.99954 * 3 2 1 32 32 H 1.09006 * 109.46976 * 300.00261 * 3 2 1 33 33 H 0.96996 * 119.99734 * 0.02562 * 6 4 3 34 34 H 1.08995 * 109.57538 * 55.69307 * 9 7 6 35 35 H 1.08995 * 109.68102 * 295.36883 * 9 7 6 36 36 H 1.08999 * 111.23841 * 316.45396 * 12 10 9 37 37 H 1.09006 * 111.23262 * 192.01045 * 12 10 9 38 38 H 1.08998 * 109.53309 * 185.71312 * 15 13 12 39 39 H 1.08997 * 109.53676 * 305.94165 * 15 13 12 40 40 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.97515 * 120.19260 * 25 16 13 42 42 H 1.09001 * 109.97644 * 241.47965 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3920 -0.0006 6 7 4.2210 2.6095 -0.0013 7 6 5.6861 2.6094 -0.0013 8 1 6.0467 1.7702 -0.5961 9 6 6.1925 3.9179 -0.6122 10 6 7.7279 3.9555 -0.5037 11 1 8.1761 4.7623 -1.0836 12 6 8.0592 4.0345 1.0128 13 6 7.7446 2.5772 1.4433 14 1 8.1878 2.3220 2.4058 15 6 6.2137 2.4216 1.4436 16 7 8.2754 1.7493 0.3401 17 6 8.7019 0.4522 0.4442 18 1 8.6666 -0.0529 1.3981 19 6 9.1796 -0.2134 -0.6763 20 7 9.2232 0.4024 -1.8388 21 14 9.7621 -1.9826 -0.5341 22 1 10.2202 -2.4612 -1.8630 23 1 10.8857 -2.0575 0.4339 24 1 8.6428 -2.8356 -0.0602 25 6 8.2729 2.5594 -0.8875 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.7361 3.4496 -0.0009 34 1 5.7672 4.7626 -0.0704 35 1 5.8990 3.9714 -1.6606 36 1 7.4093 4.7458 1.5224 37 1 9.1096 4.2761 1.1754 38 1 5.9471 1.4413 1.8385 39 1 5.7684 3.1991 2.0644 40 1 9.5574 -0.0627 -2.6217 41 1 9.2868 2.6475 -1.2776 42 1 7.6245 2.1015 -1.6345 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500994818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:33 Heat of formation + Delta-G solvation = -47.331235 kcal Electronic energy + Delta-G solvation = -21490.184353 eV Core-core repulsion = 18469.146899 eV Total energy + Delta-G solvation = -3021.037454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43163 -40.11055 -36.11878 -35.23938 -34.67392 -32.37842 -31.40059 -30.12034 -28.29500 -27.21161 -24.95196 -23.64406 -22.26598 -21.37238 -21.06887 -20.06102 -18.93201 -17.93555 -17.35134 -16.76989 -16.51641 -16.10621 -15.54140 -15.24679 -14.98795 -14.50951 -14.14185 -13.96589 -13.79858 -13.48556 -13.37296 -13.26673 -13.01285 -12.82974 -12.66575 -12.59872 -12.53383 -12.14442 -12.02963 -11.90509 -11.64572 -11.63030 -11.39317 -11.15335 -11.01205 -10.69408 -10.63817 -9.90512 -8.83300 -7.83962 -5.15570 1.37178 1.42726 1.47162 1.76937 2.33070 2.48219 3.34242 3.65253 3.79519 3.82334 3.95378 4.02995 4.11263 4.14137 4.38869 4.40161 4.55337 4.56225 4.66757 4.68494 4.72778 4.74252 4.79542 4.83493 4.92524 5.09924 5.19278 5.23012 5.26760 5.30339 5.34300 5.45554 5.46378 5.48184 5.49943 5.68619 5.77029 5.84345 6.23029 6.73472 7.13832 7.48059 7.82656 8.46579 9.26076 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015994 B = 0.006748 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.243959 B = 4148.140177 C = 5361.282113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.125 4.125 4 C 0.491 3.509 5 O -0.597 6.597 6 N -0.712 5.712 7 C 0.149 3.851 8 H 0.037 0.963 9 C -0.097 4.097 10 C -0.108 4.108 11 H 0.109 0.891 12 C -0.110 4.110 13 C 0.139 3.861 14 H 0.060 0.940 15 C -0.120 4.120 16 N -0.615 5.615 17 C -0.230 4.230 18 H 0.070 0.930 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.967 3.033 22 H -0.291 1.291 23 H -0.271 1.271 24 H -0.290 1.290 25 C 0.191 3.809 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.416 0.584 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.018 0.982 39 H 0.083 0.917 40 H 0.243 0.757 41 H 0.001 0.999 42 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.920 12.133 4.815 20.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.164 4.164 4 C 0.279 3.721 5 O -0.477 6.477 6 N -0.364 5.364 7 C 0.044 3.956 8 H 0.056 0.944 9 C -0.135 4.135 10 C -0.128 4.128 11 H 0.127 0.873 12 C -0.148 4.148 13 C 0.032 3.968 14 H 0.078 0.922 15 C -0.161 4.161 16 N -0.340 5.340 17 C -0.360 4.360 18 H 0.088 0.912 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.796 3.204 22 H -0.217 1.217 23 H -0.197 1.197 24 H -0.217 1.217 25 C 0.066 3.934 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.254 0.746 34 H 0.125 0.875 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -15.409 11.228 4.675 19.630 hybrid contribution 0.674 -1.549 -0.346 1.725 sum -14.734 9.679 4.329 18.153 Atomic orbital electron populations 1.21728 0.92788 1.02357 1.03068 1.21279 0.97330 0.95328 1.01316 1.21736 0.88011 0.99850 1.06820 1.21776 0.92216 0.83313 0.74795 1.90782 1.72056 1.33699 1.51148 1.45999 1.06814 1.08938 1.74685 1.21097 0.78934 0.98938 0.96590 0.94431 1.21834 0.94879 0.95840 1.00920 1.22790 0.95472 0.97017 0.97477 0.87258 1.22936 1.01629 0.95128 0.95064 1.21880 0.91702 0.91780 0.91434 0.92203 1.22696 0.97707 0.99430 0.96276 1.44847 1.73834 1.09629 1.05657 1.19287 1.33429 0.88601 0.94678 0.91194 1.25495 1.02966 1.01953 0.95514 1.70161 1.53670 1.36839 0.99295 0.85312 0.78047 0.80478 0.76544 1.21684 1.19705 1.21726 1.20999 0.96203 0.88433 0.87746 0.91092 0.91322 0.92607 0.94001 0.93645 0.85864 0.86250 0.74628 0.87487 0.91680 0.87369 0.91908 0.96332 0.89825 0.94753 0.98042 0.98094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.91 71.98 0.71 -1.49 16 2 C -0.11 -2.71 5.22 30.60 0.16 -2.55 16 3 C -0.12 -2.52 5.70 29.84 0.17 -2.35 16 4 C 0.49 16.21 7.78 87.65 0.68 16.89 16 5 O -0.60 -28.52 15.65 -3.04 -0.05 -28.56 16 6 N -0.71 -20.08 5.11 -439.28 -2.25 -22.33 16 7 C 0.15 5.50 2.08 45.68 0.10 5.59 16 8 H 0.04 1.97 5.51 -2.39 -0.01 1.96 16 9 C -0.10 -2.77 5.01 30.93 0.16 -2.62 16 10 C -0.11 -3.68 4.26 -9.05 -0.04 -3.72 16 11 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 12 C -0.11 -3.41 6.18 32.17 0.20 -3.21 16 13 C 0.14 5.70 4.25 45.79 0.19 5.89 16 14 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 15 C -0.12 -4.52 5.45 31.57 0.17 -4.34 16 16 N -0.62 -32.92 2.46 -664.48 -1.64 -34.56 16 17 C -0.23 -14.02 10.29 84.03 0.86 -13.16 16 18 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 20 N -0.95 -61.20 10.35 21.65 0.22 -60.97 16 21 Si 0.97 50.39 29.55 68.60 2.03 52.41 16 22 H -0.29 -15.00 7.11 99.48 0.71 -14.30 16 23 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 25 C 0.19 9.67 4.11 86.85 0.36 10.03 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 30 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 31 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.42 7.28 8.60 -92.71 -0.80 6.48 16 34 H 0.11 2.04 7.97 -2.39 -0.02 2.02 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.11 2.41 7.76 -2.39 -0.02 2.39 16 37 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 2.39 8.02 -2.39 -0.02 2.37 16 40 H 0.24 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.00 0.08 7.42 -2.39 -0.02 0.06 16 42 H 0.00 0.05 6.23 -2.39 -0.01 0.04 16 Total: -1.00 -84.28 325.45 2.71 -81.57 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.19 Total: 11.13 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 4.19 Total: 1.31 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -3.66 Total: -117.86 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.05 Total: -28.56 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.03 Total: 52.41 kcal Total: -84.28 2.71 -81.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500994818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.242 kcal (2) G-P(sol) polarization free energy of solvation -84.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds