Wall clock time and date at job start Mon Mar 30 2020 00:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50703 * 119.99934 * 2 1 4 4 C 1.32991 * 120.00051 * 179.97438 * 2 1 3 5 5 C 1.47107 * 119.99903 * 6.04818 * 4 2 1 6 6 O 1.21618 * 119.99814 * 5.26333 * 5 4 2 7 7 N 1.34774 * 120.00045 * 185.26976 * 5 4 2 8 8 C 1.46500 * 119.99711 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46523 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.70518 * 301.21845 * 9 8 7 11 11 C 1.52761 * 109.50631 * 181.10946 * 9 8 7 12 12 C 1.53041 * 109.38595 * 185.70587 * 11 9 8 13 13 C 1.53039 * 109.53999 * 61.23565 * 12 11 9 14 14 C 1.53199 * 109.31116 * 298.64101 * 13 12 11 15 15 N 1.46919 * 109.59175 * 61.58145 * 9 8 7 16 16 C 1.36942 * 120.62739 * 353.41483 * 15 9 8 17 17 H 1.08001 * 119.99982 * 31.33660 * 16 15 9 18 18 C 1.38814 * 119.99974 * 211.33114 * 16 15 9 19 19 N 1.31617 * 119.99809 * 197.50283 * 18 16 15 20 20 Si 1.86798 * 120.00065 * 17.50244 * 18 16 15 21 21 H 1.48502 * 109.47206 * 270.39628 * 20 18 16 22 22 H 1.48506 * 109.47195 * 30.39302 * 20 18 16 23 23 H 1.48497 * 109.47372 * 150.38903 * 20 18 16 24 24 H 1.08991 * 109.47553 * 235.61921 * 1 2 3 25 25 H 1.08998 * 109.47120 * 355.62519 * 1 2 3 26 26 H 1.08997 * 109.46851 * 115.61807 * 1 2 3 27 27 H 1.08998 * 109.46873 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46574 * 299.99194 * 3 2 1 29 29 H 1.09001 * 109.47051 * 59.99307 * 3 2 1 30 30 H 1.07994 * 120.00110 * 186.04394 * 4 2 1 31 31 H 0.96995 * 119.99963 * 359.97438 * 7 5 4 32 32 H 1.08996 * 109.47469 * 59.99936 * 8 7 5 33 33 H 1.08998 * 109.47277 * 299.99438 * 8 7 5 34 34 H 1.08995 * 109.57210 * 65.66971 * 11 9 8 35 35 H 1.09007 * 109.38881 * 305.62934 * 11 9 8 36 36 H 1.09008 * 109.46033 * 301.22079 * 12 11 9 37 37 H 1.09005 * 109.45534 * 181.25208 * 12 11 9 38 38 H 1.08994 * 109.50294 * 178.68900 * 13 12 11 39 39 H 1.09000 * 109.49711 * 58.58352 * 13 12 11 40 40 H 1.08995 * 109.58213 * 294.84081 * 14 13 12 41 41 H 1.09001 * 109.70191 * 174.48934 * 14 13 12 42 42 H 0.97006 * 119.99537 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4426 -2.4222 -0.1332 6 8 0.2441 -2.4165 -0.3400 7 7 2.1024 -3.5925 -0.0263 8 6 1.3760 -4.8578 -0.1600 9 6 2.3517 -6.0253 0.0009 10 1 3.1350 -5.9564 -0.7540 11 6 1.6002 -7.3448 -0.1658 12 6 2.5459 -8.5096 0.1356 13 6 3.0358 -8.4101 1.5821 14 6 3.8081 -7.1000 1.7664 15 7 2.9536 -5.9833 1.3405 16 6 2.7179 -4.9261 2.1784 17 1 1.7752 -4.4009 2.1333 18 6 3.6906 -4.5294 3.0859 19 7 3.3653 -3.7659 4.1074 20 14 5.4611 -5.0793 2.8572 21 1 5.6732 -6.3702 3.5599 22 1 5.7428 -5.2518 1.4093 23 1 6.3749 -4.0531 3.4203 24 1 -0.3634 -0.5802 0.8480 25 1 -0.3633 1.0246 0.0784 26 1 -0.3633 -0.4443 -0.9266 27 1 3.3322 1.1059 0.0005 28 1 1.9973 1.8766 -0.8901 29 1 1.9971 1.8768 0.8899 30 1 3.2474 -1.1543 0.0990 31 1 3.0583 -3.5971 0.1384 32 1 0.9101 -4.9071 -1.1441 33 1 0.6066 -4.9181 0.6097 34 1 1.2334 -7.4294 -1.1886 35 1 0.7582 -7.3715 0.5260 36 1 3.3999 -8.4683 -0.5406 37 1 2.0170 -9.4523 -0.0045 38 1 3.6909 -9.2527 1.8032 39 1 2.1806 -8.4263 2.2577 40 1 4.7126 -7.1205 1.1585 41 1 4.0758 -6.9757 2.8157 42 1 4.0452 -3.4884 4.7413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690439264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:18 Heat of formation + Delta-G solvation = -8.119364 kcal Electronic energy + Delta-G solvation = -21348.229191 eV Core-core repulsion = 18328.892091 eV Total energy + Delta-G solvation = -3019.337100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.28374 -38.04286 -35.24285 -33.99084 -33.03101 -30.99174 -30.69343 -27.92594 -27.43217 -25.85084 -24.41814 -22.66065 -21.08118 -20.22145 -19.43936 -18.21437 -16.69147 -16.15893 -15.64544 -15.07458 -14.89745 -14.20715 -13.89384 -13.72599 -13.61013 -13.44045 -13.29206 -13.15908 -12.52336 -12.21393 -12.17087 -11.96124 -11.76900 -11.61220 -11.46415 -11.26360 -11.22798 -10.81101 -10.63875 -10.43082 -10.18540 -9.94057 -9.57437 -9.46720 -8.98891 -8.75420 -8.64456 -8.05763 -6.92623 -5.96215 -3.37625 1.85895 3.27925 3.43071 3.45124 3.90710 4.11730 4.48688 4.82295 5.12077 5.16791 5.25098 5.34606 5.42077 5.52172 5.58681 5.64267 5.77339 5.78507 5.90716 5.92581 5.99771 6.01511 6.12793 6.20015 6.21748 6.25393 6.39529 6.44796 6.47203 6.48746 6.57829 6.70433 6.76998 6.86115 6.92369 7.00366 7.29518 7.95993 8.35252 8.40733 8.91915 9.03075 9.68819 10.07341 11.18561 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.006948 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.984923 B = 4029.237997 C = 5109.861835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.055 4.055 3 C -0.121 4.121 4 C -0.213 4.213 5 C 0.542 3.458 6 O -0.566 6.566 7 N -0.691 5.691 8 C 0.137 3.863 9 C 0.163 3.837 10 H 0.035 0.965 11 C -0.129 4.129 12 C -0.108 4.108 13 C -0.136 4.136 14 C 0.126 3.874 15 N -0.603 5.603 16 C -0.260 4.260 17 H 0.093 0.907 18 C 0.029 3.971 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.289 1.289 22 H -0.272 1.272 23 H -0.305 1.305 24 H 0.077 0.923 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.122 0.878 31 H 0.409 0.591 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.023 0.977 41 H 0.072 0.928 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.301 0.752 -9.314 9.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.057 4.057 3 C -0.178 4.178 4 C -0.234 4.234 5 C 0.331 3.669 6 O -0.448 6.448 7 N -0.341 5.341 8 C 0.012 3.988 9 C 0.057 3.943 10 H 0.053 0.947 11 C -0.168 4.168 12 C -0.146 4.146 13 C -0.175 4.175 14 C 0.001 3.999 15 N -0.329 5.329 16 C -0.389 4.389 17 H 0.110 0.890 18 C -0.171 4.171 19 N -0.546 5.546 20 Si 0.710 3.290 21 H -0.216 1.216 22 H -0.197 1.197 23 H -0.234 1.234 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.245 0.755 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.090 0.910 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.074 0.838 -9.308 9.407 hybrid contribution 1.739 -0.452 0.326 1.826 sum 0.666 0.386 -8.982 9.015 Atomic orbital electron populations 1.20921 0.91119 1.00259 1.04311 1.22390 0.96694 0.94278 0.92383 1.20945 0.99831 0.94727 1.02258 1.22472 1.00186 0.92349 1.08344 1.18433 0.86905 0.84482 0.77053 1.90691 1.14827 1.88006 1.51325 1.45797 1.12945 1.04769 1.70548 1.21221 0.94922 0.82594 1.00021 1.20661 0.93478 0.92244 0.87957 0.94723 1.21866 0.98856 0.95700 1.00424 1.21368 0.98739 0.97374 0.97092 1.22007 1.00627 0.98360 0.96515 1.21366 0.92416 0.86970 0.99189 1.44408 1.57152 1.19639 1.11675 1.18984 1.00077 1.07091 1.12708 0.88951 1.25348 0.97465 0.97124 0.97161 1.69818 1.33342 1.38571 1.12906 0.87018 0.87065 0.76628 0.78259 1.21616 1.19694 1.23356 0.90478 0.93657 0.89922 0.91643 0.91069 0.91032 0.86032 0.75477 0.92641 0.91318 0.92552 0.91644 0.92787 0.93081 0.93090 0.91812 0.95947 0.91015 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 8.34 36.01 0.30 -1.39 16 2 C -0.06 -0.85 6.11 -101.16 -0.62 -1.46 16 3 C -0.12 -1.39 10.05 36.01 0.36 -1.03 16 4 C -0.21 -3.67 9.63 -37.80 -0.36 -4.04 16 5 C 0.54 10.83 7.69 -12.66 -0.10 10.73 16 6 O -0.57 -12.31 13.20 5.26 0.07 -12.25 16 7 N -0.69 -13.63 3.91 -61.49 -0.24 -13.87 16 8 C 0.14 2.60 4.41 -4.04 -0.02 2.58 16 9 C 0.16 3.02 2.98 -67.82 -0.20 2.81 16 10 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 11 C -0.13 -2.04 5.34 -26.83 -0.14 -2.19 16 12 C -0.11 -1.62 5.89 -26.69 -0.16 -1.78 16 13 C -0.14 -2.33 6.08 -26.61 -0.16 -2.49 16 14 C 0.13 2.62 4.21 -3.71 -0.02 2.60 16 15 N -0.60 -13.27 2.72 -165.03 -0.45 -13.72 16 16 C -0.26 -6.71 7.51 -15.06 -0.11 -6.82 16 17 H 0.09 2.64 6.07 -52.49 -0.32 2.32 16 18 C 0.03 0.78 5.26 -17.43 -0.09 0.69 16 19 N -0.90 -26.68 13.97 55.49 0.78 -25.91 16 20 Si 0.88 21.32 24.35 -169.99 -4.14 17.18 16 21 H -0.29 -6.90 6.56 56.52 0.37 -6.53 16 22 H -0.27 -6.38 6.76 56.52 0.38 -6.00 16 23 H -0.31 -7.63 7.11 56.52 0.40 -7.23 16 24 H 0.08 1.37 7.47 -51.93 -0.39 0.98 16 25 H 0.04 0.56 8.01 -51.93 -0.42 0.15 16 26 H 0.08 1.35 7.02 -51.93 -0.36 0.98 16 27 H 0.06 0.71 7.82 -51.93 -0.41 0.31 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.12 1.92 7.88 -52.49 -0.41 1.51 16 31 H 0.41 8.17 7.50 -40.82 -0.31 7.87 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.48 7.34 -51.93 -0.38 1.10 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.02 0.46 7.06 -51.93 -0.37 0.10 16 41 H 0.07 1.65 4.76 -51.93 -0.25 1.41 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -29.92 322.68 -7.46 -37.38 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.02 Total: 8.10 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.32 Total: -1.78 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.09 Total: -53.50 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.92 -7.46 -37.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690439264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.263 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds