Wall clock time and date at job start Mon Mar 30 2020 00:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50703 * 119.99934 * 2 1 4 4 C 1.32991 * 120.00051 * 179.97438 * 2 1 3 5 5 C 1.47107 * 119.99903 * 6.04818 * 4 2 1 6 6 O 1.21618 * 119.99814 * 5.26333 * 5 4 2 7 7 N 1.34774 * 120.00045 * 185.26976 * 5 4 2 8 8 C 1.46500 * 119.99711 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46523 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.70518 * 301.21845 * 9 8 7 11 11 C 1.52761 * 109.50631 * 181.10946 * 9 8 7 12 12 C 1.53041 * 109.38595 * 185.70587 * 11 9 8 13 13 C 1.53039 * 109.53999 * 61.23565 * 12 11 9 14 14 C 1.53199 * 109.31116 * 298.64101 * 13 12 11 15 15 N 1.46919 * 109.59175 * 61.58145 * 9 8 7 16 16 C 1.36942 * 120.62739 * 353.41483 * 15 9 8 17 17 H 1.08001 * 119.99982 * 31.33660 * 16 15 9 18 18 C 1.38814 * 119.99974 * 211.33114 * 16 15 9 19 19 N 1.31617 * 119.99809 * 197.50283 * 18 16 15 20 20 Si 1.86798 * 120.00065 * 17.50244 * 18 16 15 21 21 H 1.48502 * 109.47206 * 270.39628 * 20 18 16 22 22 H 1.48506 * 109.47195 * 30.39302 * 20 18 16 23 23 H 1.48497 * 109.47372 * 150.38903 * 20 18 16 24 24 H 1.08991 * 109.47553 * 235.61921 * 1 2 3 25 25 H 1.08998 * 109.47120 * 355.62519 * 1 2 3 26 26 H 1.08997 * 109.46851 * 115.61807 * 1 2 3 27 27 H 1.08998 * 109.46873 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46574 * 299.99194 * 3 2 1 29 29 H 1.09001 * 109.47051 * 59.99307 * 3 2 1 30 30 H 1.07994 * 120.00110 * 186.04394 * 4 2 1 31 31 H 0.96995 * 119.99963 * 359.97438 * 7 5 4 32 32 H 1.08996 * 109.47469 * 59.99936 * 8 7 5 33 33 H 1.08998 * 109.47277 * 299.99438 * 8 7 5 34 34 H 1.08995 * 109.57210 * 65.66971 * 11 9 8 35 35 H 1.09007 * 109.38881 * 305.62934 * 11 9 8 36 36 H 1.09008 * 109.46033 * 301.22079 * 12 11 9 37 37 H 1.09005 * 109.45534 * 181.25208 * 12 11 9 38 38 H 1.08994 * 109.50294 * 178.68900 * 13 12 11 39 39 H 1.09000 * 109.49711 * 58.58352 * 13 12 11 40 40 H 1.08995 * 109.58213 * 294.84081 * 14 13 12 41 41 H 1.09001 * 109.70191 * 174.48934 * 14 13 12 42 42 H 0.97006 * 119.99537 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4426 -2.4222 -0.1332 6 8 0.2441 -2.4165 -0.3400 7 7 2.1024 -3.5925 -0.0263 8 6 1.3760 -4.8578 -0.1600 9 6 2.3517 -6.0253 0.0009 10 1 3.1350 -5.9564 -0.7540 11 6 1.6002 -7.3448 -0.1658 12 6 2.5459 -8.5096 0.1356 13 6 3.0358 -8.4101 1.5821 14 6 3.8081 -7.1000 1.7664 15 7 2.9536 -5.9833 1.3405 16 6 2.7179 -4.9261 2.1784 17 1 1.7752 -4.4009 2.1333 18 6 3.6906 -4.5294 3.0859 19 7 3.3653 -3.7659 4.1074 20 14 5.4611 -5.0793 2.8572 21 1 5.6732 -6.3702 3.5599 22 1 5.7428 -5.2518 1.4093 23 1 6.3749 -4.0531 3.4203 24 1 -0.3634 -0.5802 0.8480 25 1 -0.3633 1.0246 0.0784 26 1 -0.3633 -0.4443 -0.9266 27 1 3.3322 1.1059 0.0005 28 1 1.9973 1.8766 -0.8901 29 1 1.9971 1.8768 0.8899 30 1 3.2474 -1.1543 0.0990 31 1 3.0583 -3.5971 0.1384 32 1 0.9101 -4.9071 -1.1441 33 1 0.6066 -4.9181 0.6097 34 1 1.2334 -7.4294 -1.1886 35 1 0.7582 -7.3715 0.5260 36 1 3.3999 -8.4683 -0.5406 37 1 2.0170 -9.4523 -0.0045 38 1 3.6909 -9.2527 1.8032 39 1 2.1806 -8.4263 2.2577 40 1 4.7126 -7.1205 1.1585 41 1 4.0758 -6.9757 2.8157 42 1 4.0452 -3.4884 4.7413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690439264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:17 Heat of formation + Delta-G solvation = -27.276812 kcal Electronic energy + Delta-G solvation = -21349.059920 eV Core-core repulsion = 18328.892091 eV Total energy + Delta-G solvation = -3020.167829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83946 -39.58102 -36.54579 -35.50788 -34.86504 -32.63731 -32.37889 -29.20368 -28.60197 -27.47340 -26.06080 -24.29692 -22.53772 -21.78078 -20.92706 -19.65951 -18.43853 -17.75246 -17.34048 -16.68061 -16.52255 -15.68849 -15.34946 -15.21048 -15.03466 -14.83558 -14.72454 -14.51011 -14.28631 -13.71744 -13.56157 -13.27640 -13.21350 -13.12041 -12.88324 -12.64793 -12.52294 -12.40472 -12.27315 -11.95990 -11.69296 -11.56072 -11.21569 -11.20069 -10.62372 -10.50951 -10.13101 -9.61378 -8.77617 -8.07033 -5.44066 0.51681 1.34119 1.43300 1.52315 2.38303 2.47131 2.63650 3.10699 3.32518 3.90248 3.93440 3.97844 4.07752 4.18435 4.32505 4.37161 4.44890 4.52764 4.60105 4.63968 4.71211 4.73548 4.82571 4.87494 4.94603 4.95916 5.04551 5.06785 5.16298 5.19388 5.24824 5.30601 5.32426 5.59117 5.61781 5.68067 5.75748 5.97518 6.27270 6.81535 6.98261 7.45688 7.68826 8.09793 9.11974 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.006948 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.984923 B = 4029.237997 C = 5109.861835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.037 4.037 3 C -0.119 4.119 4 C -0.248 4.248 5 C 0.532 3.468 6 O -0.593 6.593 7 N -0.695 5.695 8 C 0.141 3.859 9 C 0.162 3.838 10 H 0.053 0.947 11 C -0.125 4.125 12 C -0.103 4.103 13 C -0.131 4.131 14 C 0.119 3.881 15 N -0.615 5.615 16 C -0.228 4.228 17 H 0.054 0.946 18 C -0.028 4.028 19 N -0.957 5.957 20 Si 0.942 3.058 21 H -0.284 1.284 22 H -0.255 1.255 23 H -0.318 1.318 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.407 0.593 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.034 0.966 41 H 0.044 0.956 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.785 0.019 -11.493 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.039 4.039 3 C -0.175 4.175 4 C -0.268 4.268 5 C 0.323 3.677 6 O -0.478 6.478 7 N -0.343 5.343 8 C 0.017 3.983 9 C 0.057 3.943 10 H 0.070 0.930 11 C -0.164 4.164 12 C -0.140 4.140 13 C -0.170 4.170 14 C -0.006 4.006 15 N -0.341 5.341 16 C -0.358 4.358 17 H 0.072 0.928 18 C -0.223 4.223 19 N -0.604 5.604 20 Si 0.772 3.228 21 H -0.211 1.211 22 H -0.179 1.179 23 H -0.248 1.248 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.243 0.757 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.019 0.056 -11.534 11.534 hybrid contribution 1.252 -0.197 0.968 1.595 sum 1.270 -0.140 -10.566 10.643 Atomic orbital electron populations 1.20881 0.91488 1.01730 1.02418 1.22867 0.96774 0.95518 0.88785 1.21046 0.99745 0.92660 1.04073 1.22521 1.00792 0.91763 1.11755 1.18985 0.86836 0.85471 0.76370 1.90663 1.15901 1.88470 1.52765 1.45844 1.12765 1.05147 1.70522 1.21207 0.94437 0.82960 0.99741 1.20876 0.93731 0.93436 0.86289 0.92959 1.21838 0.98240 0.94371 1.01954 1.21368 0.99178 0.98030 0.95436 1.21939 1.00033 0.96976 0.98068 1.21436 0.93166 0.88278 0.97701 1.44525 1.57595 1.19212 1.12803 1.18712 0.98095 1.06908 1.12036 0.92821 1.25880 1.01087 0.98123 0.97187 1.69967 1.34225 1.41672 1.14516 0.86003 0.82179 0.75790 0.78866 1.21102 1.17866 1.24756 0.93473 0.90171 0.90974 0.90914 0.88369 0.89662 0.84909 0.75748 0.90703 0.94855 0.89402 0.93275 0.91332 0.90265 0.90498 0.93429 0.94765 0.93764 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.32 8.34 71.24 0.59 -2.73 16 2 C -0.04 -1.11 6.11 -17.61 -0.11 -1.22 16 3 C -0.12 -2.41 10.05 71.24 0.72 -1.70 16 4 C -0.25 -8.65 9.63 23.43 0.23 -8.42 16 5 C 0.53 22.03 7.69 86.57 0.67 22.69 16 6 O -0.59 -26.89 13.20 -4.09 -0.05 -26.94 16 7 N -0.69 -28.09 3.91 -466.71 -1.82 -29.91 16 8 C 0.14 5.41 4.41 86.38 0.38 5.79 16 9 C 0.16 5.75 2.98 44.83 0.13 5.88 16 10 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 11 C -0.12 -3.61 5.34 30.53 0.16 -3.45 16 12 C -0.10 -2.66 5.89 30.62 0.18 -2.48 16 13 C -0.13 -4.14 6.08 30.67 0.19 -3.96 16 14 C 0.12 4.73 4.21 86.37 0.36 5.09 16 15 N -0.62 -26.75 2.72 -676.03 -1.84 -28.59 16 16 C -0.23 -12.07 7.51 84.03 0.63 -11.44 16 17 H 0.05 3.26 6.07 -2.91 -0.02 3.24 16 18 C -0.03 -1.57 5.26 84.86 0.45 -1.12 16 19 N -0.96 -58.93 13.97 21.65 0.30 -58.63 16 20 Si 0.94 44.65 24.35 68.60 1.67 46.32 16 21 H -0.28 -13.10 6.56 99.48 0.65 -12.45 16 22 H -0.25 -11.18 6.76 99.48 0.67 -10.51 16 23 H -0.32 -15.65 7.11 99.48 0.71 -14.94 16 24 H 0.05 1.73 7.47 -2.39 -0.02 1.71 16 25 H 0.08 1.84 8.01 -2.39 -0.02 1.83 16 26 H 0.07 2.37 7.02 -2.39 -0.02 2.35 16 27 H 0.07 1.40 7.82 -2.39 -0.02 1.38 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.13 4.22 7.88 -2.91 -0.02 4.20 16 31 H 0.41 16.54 7.50 -92.71 -0.69 15.85 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.03 1.50 7.34 -2.39 -0.02 1.49 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.03 1.30 7.06 -2.39 -0.02 1.28 16 41 H 0.04 2.00 4.76 -2.39 -0.01 1.99 16 42 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -68.13 322.68 3.05 -65.08 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.21 Total: 29.72 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 4.58 Total: 2.95 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -3.36 Total: -117.13 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.67 Total: 46.32 kcal Total: -68.13 3.05 -65.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690439264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.798 kcal (2) G-P(sol) polarization free energy of solvation -68.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds