Wall clock time and date at job start Mon Mar 30 2020 00:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50701 * 119.99842 * 2 1 4 4 N 1.46897 * 109.47035 * 124.85711 * 3 2 1 5 5 C 1.46900 * 111.00490 * 75.50703 * 4 3 2 6 6 C 1.50704 * 109.47005 * 69.26395 * 5 4 3 7 7 H 1.07998 * 120.00156 * 354.90485 * 6 5 4 8 8 C 1.37870 * 119.99768 * 174.89631 * 6 5 4 9 9 N 1.31519 * 120.00239 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99826 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47036 * 270.00274 * 10 8 6 12 12 H 1.48499 * 109.46963 * 30.00513 * 10 8 6 13 13 H 1.48506 * 109.46611 * 150.00584 * 10 8 6 14 14 C 1.46900 * 111.00084 * 199.46235 * 4 3 2 15 15 H 1.09007 * 110.43270 * 295.34385 * 14 4 3 16 16 C 1.54629 * 110.48528 * 57.88094 * 14 4 3 17 17 C 1.54695 * 101.66554 * 143.39561 * 16 14 4 18 18 N 1.46761 * 105.53568 * 334.74358 * 17 16 14 19 19 C 1.46503 * 124.34818 * 196.94223 * 18 17 16 20 20 C 1.53006 * 109.47001 * 119.95263 * 19 18 17 21 21 C 1.53003 * 109.47146 * 239.95013 * 19 18 17 22 22 C 1.34422 * 111.30173 * 16.91998 * 18 17 16 23 23 O 1.21277 * 124.94015 * 179.55426 * 22 18 17 24 24 H 1.07993 * 119.99847 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.99519 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00025 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47295 * 4.85309 * 3 2 1 28 28 H 1.09004 * 109.47088 * 244.85243 * 3 2 1 29 29 H 1.09002 * 109.46735 * 309.27177 * 5 4 3 30 30 H 1.08998 * 109.47271 * 189.27213 * 5 4 3 31 31 H 0.97006 * 119.99904 * 179.97438 * 9 8 6 32 32 H 1.08996 * 110.97586 * 261.59627 * 16 14 4 33 33 H 1.08996 * 110.97122 * 25.36348 * 16 14 4 34 34 H 1.08994 * 110.29613 * 215.67883 * 17 16 14 35 35 H 1.09005 * 110.20759 * 93.76205 * 17 16 14 36 36 H 1.08997 * 109.47239 * 359.94991 * 19 18 17 37 37 H 1.09001 * 109.46914 * 59.99537 * 20 19 18 38 38 H 1.08993 * 109.46994 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.46719 * 299.99907 * 20 19 18 40 40 H 1.08997 * 109.47034 * 300.00103 * 21 19 18 41 41 H 1.08996 * 109.46719 * 59.99991 * 21 19 18 42 42 H 1.09001 * 109.46995 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3334 1.1365 5 6 4.1657 0.4859 0.8789 6 6 5.0098 1.1109 -0.2019 7 1 4.6656 1.9997 -0.7098 8 6 6.2215 0.5480 -0.5423 9 7 6.6405 -0.5346 0.0759 10 14 7.2681 1.3230 -1.8815 11 1 6.9066 0.7335 -3.1957 12 1 7.0266 2.7879 -1.9129 13 1 8.7031 1.0637 -1.6005 14 6 3.3987 2.7100 1.4513 15 1 3.9661 3.1382 0.6248 16 6 2.1597 3.5801 1.7653 17 6 2.6982 4.4975 2.8884 18 7 3.7958 3.7504 3.5138 19 6 4.3638 4.0612 4.8279 20 6 4.1950 2.8554 5.7546 21 6 5.8517 4.3841 4.6770 22 6 4.2126 2.7441 2.7260 23 8 5.1109 1.9759 2.9975 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3584 2.1318 0.0869 28 1 2.6234 1.4014 -0.9303 29 1 3.8360 -0.5018 0.5567 30 1 4.7544 0.3927 1.7915 31 1 7.4929 -0.9308 -0.1639 32 1 1.8604 4.1619 0.8935 33 1 1.3336 2.9670 2.1255 34 1 1.9152 4.6999 3.6192 35 1 3.0698 5.4312 2.4662 36 1 3.8467 4.9214 5.2531 37 1 4.7121 1.9952 5.3293 38 1 4.6180 3.0864 6.7321 39 1 3.1350 2.6254 5.8621 40 1 6.3688 3.5239 4.2519 41 1 5.9719 5.2430 4.0169 42 1 6.2745 4.6148 5.6549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292237309.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:27 Heat of formation + Delta-G solvation = -24.158120 kcal Electronic energy + Delta-G solvation = -21654.270914 eV Core-core repulsion = 18634.238322 eV Total energy + Delta-G solvation = -3020.032592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.55824 -38.49807 -37.28321 -35.44595 -34.88128 -33.50433 -30.40605 -28.69002 -28.09648 -28.02659 -25.99650 -23.91222 -22.91856 -21.90592 -20.41384 -19.56556 -18.65642 -17.56788 -17.37642 -16.72856 -16.21215 -15.97774 -15.44691 -15.34373 -14.96572 -14.66855 -14.46830 -14.24698 -14.09948 -13.70084 -13.64194 -13.16655 -12.95462 -12.94379 -12.77573 -12.68247 -12.49192 -12.32346 -12.19738 -12.03888 -11.94724 -11.78014 -11.72602 -11.49297 -10.60673 -10.27427 -10.08398 -9.50334 -8.97973 -8.10653 -6.27887 1.30505 1.33100 1.42024 1.48138 1.85722 2.18980 2.36327 3.15048 3.48748 3.57019 3.79022 4.02188 4.14620 4.17407 4.26859 4.30666 4.37992 4.48113 4.67827 4.72114 4.75295 4.78269 4.86117 4.89611 4.92783 4.95524 5.03509 5.11252 5.25592 5.27913 5.31556 5.35112 5.45637 5.81533 5.84993 5.96707 5.99739 6.08329 6.24596 6.31139 6.59391 6.92662 7.40511 7.53042 8.93311 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.013336 B = 0.008415 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.002194 B = 3326.556965 C = 4644.515895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.155 4.155 3 C 0.083 3.917 4 N -0.522 5.522 5 C 0.194 3.806 6 C -0.542 4.542 7 H 0.056 0.944 8 C 0.006 3.994 9 N -0.927 5.927 10 Si 0.954 3.046 11 H -0.269 1.269 12 H -0.266 1.266 13 H -0.286 1.286 14 C 0.049 3.951 15 H 0.059 0.941 16 C -0.117 4.117 17 C 0.108 3.892 18 N -0.622 5.622 19 C 0.152 3.848 20 C -0.161 4.161 21 C -0.164 4.164 22 C 0.517 3.483 23 O -0.553 6.553 24 H 0.107 0.893 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.028 0.972 29 H -0.008 1.008 30 H 0.026 0.974 31 H 0.260 0.740 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.025 0.975 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.025 0.975 41 H 0.059 0.941 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.703 14.112 6.670 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C -0.044 4.044 4 N -0.246 5.246 5 C 0.067 3.933 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.567 5.567 10 Si 0.779 3.221 11 H -0.194 1.194 12 H -0.190 1.190 13 H -0.212 1.212 14 C -0.063 4.063 15 H 0.076 0.924 16 C -0.155 4.155 17 C -0.014 4.014 18 N -0.358 5.358 19 C 0.050 3.950 20 C -0.219 4.219 21 C -0.222 4.222 22 C 0.305 3.695 23 O -0.429 6.429 24 H 0.125 0.875 25 H 0.136 0.864 26 H 0.093 0.907 27 H 0.119 0.881 28 H 0.046 0.954 29 H 0.010 0.990 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.147 0.853 37 H 0.044 0.956 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.299 13.428 7.322 19.626 hybrid contribution 1.888 -0.318 -1.540 2.457 sum -10.411 13.109 5.782 17.711 Atomic orbital electron populations 1.23873 0.94231 1.02986 1.00078 1.22777 0.96610 0.97564 1.00397 1.21222 0.94599 0.96495 0.92128 1.62546 1.16186 1.07598 1.38239 1.19561 0.87029 0.91026 0.95637 1.21853 1.04624 1.11647 1.20020 0.92601 1.25830 0.99088 0.95488 0.98811 1.70119 1.21380 1.22150 1.43060 0.85629 0.77859 0.79083 0.79560 1.19399 1.19013 1.21226 1.22276 0.97384 0.91574 0.95050 0.92383 1.22838 0.95787 0.96934 0.99949 1.22333 0.88899 0.94563 0.95641 1.48551 1.37279 1.31534 1.18461 1.21101 0.94077 0.98661 0.81146 1.22122 1.01963 0.98032 0.99833 1.22151 0.96322 1.00793 1.02972 1.20995 0.82664 0.79811 0.86054 1.90675 1.32037 1.43318 1.76870 0.87506 0.86356 0.90718 0.88127 0.95424 0.99005 0.95606 0.93145 0.87050 0.88792 0.87179 0.89507 0.85322 0.95581 0.89352 0.92028 0.95562 0.92221 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 14.32 67.77 0.97 -3.60 16 2 C -0.15 -5.49 9.36 25.64 0.24 -5.25 16 3 C 0.08 3.09 5.15 85.56 0.44 3.53 16 4 N -0.52 -23.24 4.48 -880.08 -3.94 -27.18 16 5 C 0.19 11.16 4.63 85.56 0.40 11.55 16 6 C -0.54 -32.05 7.39 25.60 0.19 -31.86 16 7 H 0.06 3.16 6.01 -2.91 -0.02 3.14 16 8 C 0.01 0.39 5.46 84.65 0.46 0.85 16 9 N -0.93 -60.44 13.29 21.45 0.28 -60.16 16 10 Si 0.95 46.94 29.54 68.60 2.03 48.97 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 13 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 14 C 0.05 1.92 2.25 44.91 0.10 2.02 16 15 H 0.06 2.55 6.31 -2.38 -0.02 2.53 16 16 C -0.12 -2.77 5.26 31.73 0.17 -2.61 16 17 C 0.11 2.10 7.31 86.91 0.64 2.74 16 18 N -0.62 -18.47 2.83 -793.60 -2.25 -20.72 16 19 C 0.15 3.74 3.48 44.99 0.16 3.89 16 20 C -0.16 -4.33 9.20 71.98 0.66 -3.67 16 21 C -0.16 -4.47 9.20 71.98 0.66 -3.81 16 22 C 0.52 21.96 6.98 87.90 0.61 22.57 16 23 O -0.55 -30.04 12.38 -3.02 -0.04 -30.08 16 24 H 0.11 2.45 8.06 -2.91 -0.02 2.43 16 25 H 0.12 2.45 7.84 -2.91 -0.02 2.42 16 26 H 0.07 3.10 7.26 -2.91 -0.02 3.08 16 27 H 0.10 2.87 6.03 -2.39 -0.01 2.86 16 28 H 0.03 1.18 6.75 -2.38 -0.02 1.17 16 29 H -0.01 -0.51 6.93 -2.39 -0.02 -0.52 16 30 H 0.03 1.72 5.69 -2.39 -0.01 1.71 16 31 H 0.26 16.00 8.31 -92.70 -0.77 15.23 16 32 H 0.11 1.98 8.07 -2.39 -0.02 1.96 16 33 H 0.09 2.15 7.91 -2.39 -0.02 2.13 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.13 1.99 8.07 -2.39 -0.02 1.97 16 37 H 0.02 0.95 6.80 -2.39 -0.02 0.93 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.03 0.97 6.77 -2.39 -0.02 0.95 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -81.16 329.44 2.77 -78.40 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.98 Total: 14.41 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.70 Total: -3.64 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -5.90 Total: -108.05 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.04 Total: -30.08 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -81.16 2.77 -78.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292237309.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.239 kcal (2) G-P(sol) polarization free energy of solvation -81.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds