Wall clock time and date at job start Mon Mar 30 2020 01:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47292 * 2 1 4 4 O 1.21280 * 119.99808 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99771 * 179.97438 * 3 2 1 6 6 C 1.46935 * 125.40747 * 359.97438 * 5 3 2 7 7 C 1.54805 * 107.40814 * 181.48336 * 6 5 3 8 8 H 1.09000 * 111.32913 * 219.65676 * 7 6 5 9 9 C 1.53050 * 107.33815 * 96.71421 * 7 6 5 10 10 C 1.52845 * 109.69794 * 192.70625 * 9 7 6 11 11 C 1.52672 * 108.57809 * 65.26810 * 10 9 7 12 12 C 1.51480 * 110.82386 * 299.96744 * 11 10 9 13 13 H 1.09001 * 108.27951 * 285.20336 * 12 11 10 14 14 N 1.46494 * 108.27934 * 168.32659 * 12 11 10 15 15 C 1.36936 * 119.99945 * 79.09610 * 14 12 11 16 16 H 1.07993 * 120.00664 * 0.02562 * 15 14 12 17 17 C 1.38823 * 119.99994 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99917 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00006 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47587 * 59.99558 * 19 17 15 21 21 H 1.48499 * 109.47091 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46962 * 299.99701 * 19 17 15 23 23 C 1.49577 * 115.49257 * 46.76440 * 12 11 10 24 24 H 1.09001 * 107.99825 * 201.47976 * 23 12 11 25 25 C 1.47242 * 125.40276 * 179.97438 * 5 3 2 26 26 H 1.09002 * 109.46971 * 59.99720 * 1 2 3 27 27 H 1.08996 * 109.47539 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46986 * 300.00300 * 1 2 3 29 29 H 1.08994 * 109.47191 * 239.99929 * 2 1 3 30 30 H 1.08999 * 109.46521 * 119.99671 * 2 1 3 31 31 H 1.09002 * 109.88153 * 300.98145 * 6 5 3 32 32 H 1.08996 * 109.87991 * 61.98570 * 6 5 3 33 33 H 1.09004 * 109.30609 * 72.71170 * 9 7 6 34 34 H 1.08998 * 109.51588 * 312.82870 * 9 7 6 35 35 H 1.08998 * 109.61574 * 305.54422 * 10 9 7 36 36 H 1.08998 * 109.77378 * 185.08718 * 10 9 7 37 37 H 1.09002 * 109.20673 * 179.62030 * 11 10 9 38 38 H 1.09002 * 109.20258 * 60.31629 * 11 10 9 39 39 H 0.97005 * 120.00061 * 259.09494 * 14 12 11 40 40 H 0.96998 * 119.99916 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.24231 * 317.56678 * 25 5 3 42 42 H 1.09005 * 110.23744 * 79.55399 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4132 0.6451 0.0017 7 6 5.7730 1.3840 0.0401 8 1 6.5066 0.8981 -0.6032 9 6 6.2284 1.4255 1.5007 10 6 7.3922 2.4050 1.6499 11 6 6.8861 3.8121 1.3422 12 6 6.3443 3.8927 -0.0701 13 1 7.1881 3.9019 -0.7600 14 7 5.6266 5.1615 -0.2152 15 6 6.3233 6.3228 -0.4181 16 1 7.4017 6.3034 -0.4716 17 6 5.6432 7.5253 -0.5551 18 7 4.3288 7.5491 -0.4904 19 14 6.5935 9.1093 -0.8326 20 1 7.3840 8.9996 -2.0849 21 1 5.6422 10.2441 -0.9450 22 1 7.5099 9.3439 0.3122 23 6 5.4231 2.7843 -0.4704 24 1 5.4132 2.7312 -1.5590 25 6 3.9769 3.0028 0.0000 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.3122 0.0086 0.8808 32 1 4.3452 0.0408 -0.9029 33 1 6.5507 0.4300 1.8062 34 1 5.3999 1.7478 2.1314 35 1 8.1852 2.1402 0.9506 36 1 7.7762 2.3689 2.6694 37 1 7.7072 4.5206 1.4522 38 1 6.0943 4.0701 2.0454 39 1 4.6579 5.1790 -0.1676 40 1 3.8537 8.3892 -0.5865 41 1 3.4511 3.6621 -0.6907 42 1 3.9668 3.4235 1.0056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992593904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:06 Heat of formation + Delta-G solvation = -37.749059 kcal Electronic energy + Delta-G solvation = -21320.353925 eV Core-core repulsion = 18299.731985 eV Total energy + Delta-G solvation = -3020.621940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.47040 -38.59772 -35.50443 -33.94927 -32.80965 -31.60138 -30.62163 -28.81272 -26.81563 -25.28880 -23.69872 -22.96227 -21.58439 -20.86214 -19.04273 -18.29313 -17.30739 -16.72073 -16.11224 -15.39867 -15.06517 -14.72958 -14.21490 -13.82448 -13.63483 -13.52925 -13.20975 -12.79738 -12.65297 -12.55548 -12.25368 -11.95413 -11.83531 -11.68424 -11.26918 -11.18627 -10.99948 -10.94473 -10.81127 -10.75040 -10.24871 -10.16836 -9.87913 -9.66514 -9.59336 -9.49881 -8.83460 -8.39554 -6.93320 -5.72180 -3.02182 2.82576 3.17373 3.46077 3.50357 3.51999 4.47898 4.55965 4.63267 4.81071 4.90717 5.02637 5.04002 5.26462 5.36566 5.37395 5.45256 5.51597 5.60415 5.68796 5.70280 5.77626 5.78858 5.85329 5.87681 5.96839 6.08261 6.14703 6.17345 6.29796 6.35889 6.42270 6.46991 6.56848 6.64038 6.76011 6.94142 7.18269 7.72446 7.72775 8.37226 8.45697 9.56462 10.13068 10.47151 11.50093 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.005712 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.042188 B = 4901.025646 C = 6073.957100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.519 3.481 4 O -0.537 6.537 5 N -0.618 5.618 6 C 0.103 3.897 7 C -0.088 4.088 8 H 0.092 0.908 9 C -0.109 4.109 10 C -0.117 4.117 11 C -0.130 4.130 12 C 0.191 3.809 13 H 0.042 0.958 14 N -0.730 5.730 15 C -0.241 4.241 16 H 0.069 0.931 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.905 3.095 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.088 4.088 24 H 0.068 0.932 25 C 0.118 3.882 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.083 0.917 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 -19.284 2.339 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.308 3.692 4 O -0.414 6.414 5 N -0.352 5.352 6 C -0.020 4.020 7 C -0.108 4.108 8 H 0.110 0.890 9 C -0.147 4.147 10 C -0.155 4.155 11 C -0.170 4.170 12 C 0.082 3.918 13 H 0.060 0.940 14 N -0.373 5.373 15 C -0.373 4.373 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.737 3.263 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.108 4.108 24 H 0.087 0.913 25 C -0.004 4.004 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.678 -18.634 2.280 18.785 hybrid contribution 0.302 0.950 -0.142 1.007 sum 0.981 -17.684 2.137 17.840 Atomic orbital electron populations 1.21533 0.93175 1.01244 1.03500 1.21600 0.98391 0.93980 1.03875 1.20416 0.80617 0.91739 0.76461 1.90741 1.54275 1.46674 1.49689 1.48525 1.04943 1.08572 1.73196 1.22265 0.87472 0.91184 1.01103 1.21969 0.95252 0.95827 0.97712 0.88977 1.21581 0.98904 0.99023 0.95187 1.21439 0.97239 0.96234 1.00622 1.21878 1.00835 0.94622 0.99686 1.19013 0.93239 0.85433 0.94156 0.93965 1.42689 1.06166 1.01432 1.86972 1.19173 0.90977 0.85487 1.41626 0.91261 1.24745 0.95490 0.97717 1.02846 1.69654 1.05558 1.25884 1.56801 0.86299 0.78602 0.83498 0.77949 1.21324 1.21735 1.21324 1.21161 0.94564 0.94117 1.00960 0.91319 1.21933 0.92466 0.83666 1.02367 0.91942 0.92306 0.91972 0.89275 0.89295 0.91417 0.91861 0.92406 0.91839 0.92339 0.92643 0.92161 0.92398 0.77939 0.93400 0.89885 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.20 37.16 0.34 -1.09 16 2 C -0.14 -1.45 5.59 -27.88 -0.16 -1.61 16 3 C 0.52 8.16 7.84 -10.99 -0.09 8.07 16 4 O -0.54 -10.99 16.28 5.56 0.09 -10.90 16 5 N -0.62 -9.24 3.33 -171.23 -0.57 -9.81 16 6 C 0.10 1.12 5.91 -2.85 -0.02 1.11 16 7 C -0.09 -1.04 3.36 -89.59 -0.30 -1.34 16 8 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 9 C -0.11 -1.26 4.77 -26.78 -0.13 -1.39 16 10 C -0.12 -1.52 5.94 -26.98 -0.16 -1.68 16 11 C -0.13 -2.25 5.30 -27.67 -0.15 -2.40 16 12 C 0.19 3.66 2.57 -70.39 -0.18 3.48 16 13 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 14 N -0.73 -18.08 4.97 -55.84 -0.28 -18.36 16 15 C -0.24 -6.67 9.79 -15.06 -0.15 -6.82 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 18 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 19 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 C -0.09 -1.42 2.41 -91.93 -0.22 -1.64 16 24 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 25 C 0.12 2.12 4.70 -3.31 -0.02 2.11 16 26 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.61 7.70 -51.93 -0.40 0.21 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.82 7.95 -51.93 -0.41 0.41 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.39 10.26 5.67 -40.82 -0.23 10.02 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.08 1.78 7.54 -51.93 -0.39 1.39 16 42 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -32.71 328.27 -8.73 -41.45 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.31 Total: 6.71 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.31 Total: -3.64 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.12 Total: -56.13 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.71 -8.73 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992593904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.698 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds