Wall clock time and date at job start Mon Mar 30 2020 01:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50702 * 109.47292 * 2 1 4 4 O 1.21280 * 119.99808 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99771 * 179.97438 * 3 2 1 6 6 C 1.46935 * 125.40747 * 359.97438 * 5 3 2 7 7 C 1.54805 * 107.40814 * 181.48336 * 6 5 3 8 8 H 1.09000 * 111.32913 * 219.65676 * 7 6 5 9 9 C 1.53050 * 107.33815 * 96.71421 * 7 6 5 10 10 C 1.52845 * 109.69794 * 192.70625 * 9 7 6 11 11 C 1.52672 * 108.57809 * 65.26810 * 10 9 7 12 12 C 1.51480 * 110.82386 * 299.96744 * 11 10 9 13 13 H 1.09001 * 108.27951 * 285.20336 * 12 11 10 14 14 N 1.46494 * 108.27934 * 168.32659 * 12 11 10 15 15 C 1.36936 * 119.99945 * 79.09610 * 14 12 11 16 16 H 1.07993 * 120.00664 * 0.02562 * 15 14 12 17 17 C 1.38823 * 119.99994 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99917 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00006 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47587 * 59.99558 * 19 17 15 21 21 H 1.48499 * 109.47091 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46962 * 299.99701 * 19 17 15 23 23 C 1.49577 * 115.49257 * 46.76440 * 12 11 10 24 24 H 1.09001 * 107.99825 * 201.47976 * 23 12 11 25 25 C 1.47242 * 125.40276 * 179.97438 * 5 3 2 26 26 H 1.09002 * 109.46971 * 59.99720 * 1 2 3 27 27 H 1.08996 * 109.47539 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46986 * 300.00300 * 1 2 3 29 29 H 1.08994 * 109.47191 * 239.99929 * 2 1 3 30 30 H 1.08999 * 109.46521 * 119.99671 * 2 1 3 31 31 H 1.09002 * 109.88153 * 300.98145 * 6 5 3 32 32 H 1.08996 * 109.87991 * 61.98570 * 6 5 3 33 33 H 1.09004 * 109.30609 * 72.71170 * 9 7 6 34 34 H 1.08998 * 109.51588 * 312.82870 * 9 7 6 35 35 H 1.08998 * 109.61574 * 305.54422 * 10 9 7 36 36 H 1.08998 * 109.77378 * 185.08718 * 10 9 7 37 37 H 1.09002 * 109.20673 * 179.62030 * 11 10 9 38 38 H 1.09002 * 109.20258 * 60.31629 * 11 10 9 39 39 H 0.97005 * 120.00061 * 259.09494 * 14 12 11 40 40 H 0.96998 * 119.99916 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.24231 * 317.56678 * 25 5 3 42 42 H 1.09005 * 110.23744 * 79.55399 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.4132 0.6451 0.0017 7 6 5.7730 1.3840 0.0401 8 1 6.5066 0.8981 -0.6032 9 6 6.2284 1.4255 1.5007 10 6 7.3922 2.4050 1.6499 11 6 6.8861 3.8121 1.3422 12 6 6.3443 3.8927 -0.0701 13 1 7.1881 3.9019 -0.7600 14 7 5.6266 5.1615 -0.2152 15 6 6.3233 6.3228 -0.4181 16 1 7.4017 6.3034 -0.4716 17 6 5.6432 7.5253 -0.5551 18 7 4.3288 7.5491 -0.4904 19 14 6.5935 9.1093 -0.8326 20 1 7.3840 8.9996 -2.0849 21 1 5.6422 10.2441 -0.9450 22 1 7.5099 9.3439 0.3122 23 6 5.4231 2.7843 -0.4704 24 1 5.4132 2.7312 -1.5590 25 6 3.9769 3.0028 0.0000 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.3122 0.0086 0.8808 32 1 4.3452 0.0408 -0.9029 33 1 6.5507 0.4300 1.8062 34 1 5.3999 1.7478 2.1314 35 1 8.1852 2.1402 0.9506 36 1 7.7762 2.3689 2.6694 37 1 7.7072 4.5206 1.4522 38 1 6.0943 4.0701 2.0454 39 1 4.6579 5.1790 -0.1676 40 1 3.8537 8.3892 -0.5865 41 1 3.4511 3.6621 -0.6907 42 1 3.9668 3.4235 1.0056 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992593904.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:05 Heat of formation + Delta-G solvation = -59.857455 kcal Electronic energy + Delta-G solvation = -21321.312617 eV Core-core repulsion = 18299.731985 eV Total energy + Delta-G solvation = -3021.580632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.69881 -39.89413 -37.00460 -35.49910 -33.80330 -33.39482 -31.80616 -30.46589 -28.17464 -26.44675 -25.59352 -24.07536 -22.79480 -22.14349 -20.26417 -19.67912 -19.01885 -18.05115 -17.38866 -16.73541 -16.57361 -16.18119 -15.50036 -15.31040 -15.09465 -14.86607 -14.51179 -14.04913 -13.92025 -13.86109 -13.45191 -13.15710 -13.11172 -12.81659 -12.77296 -12.62074 -12.40481 -12.30005 -12.13282 -12.04638 -11.97079 -11.88178 -11.27272 -11.20286 -10.99477 -10.90144 -10.69680 -9.64448 -9.01614 -7.94604 -5.24199 1.43833 1.47617 1.53828 1.63470 2.02050 2.54549 3.37836 3.39280 3.50597 3.74652 3.78002 4.11570 4.17713 4.24594 4.25321 4.30346 4.32100 4.42207 4.49299 4.62923 4.67815 4.70429 4.81054 4.85116 4.90493 4.95820 4.97550 5.05497 5.11240 5.20795 5.25289 5.31249 5.36261 5.38574 5.45367 5.51947 5.59779 5.73717 6.27002 6.58002 7.17741 7.31965 8.09534 8.30527 9.29033 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019783 B = 0.005712 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.042188 B = 4901.025646 C = 6073.957100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.505 3.495 4 O -0.602 6.602 5 N -0.617 5.617 6 C 0.099 3.901 7 C -0.078 4.078 8 H 0.128 0.872 9 C -0.106 4.106 10 C -0.108 4.108 11 C -0.123 4.123 12 C 0.188 3.812 13 H 0.041 0.959 14 N -0.747 5.747 15 C -0.237 4.237 16 H 0.079 0.921 17 C -0.081 4.081 18 N -0.976 5.976 19 Si 0.974 3.026 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.276 1.276 23 C -0.082 4.082 24 H 0.061 0.939 25 C 0.127 3.873 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.041 0.959 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.029 0.971 39 H 0.371 0.629 40 H 0.249 0.751 41 H 0.031 0.969 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 -23.353 2.500 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.296 3.704 4 O -0.484 6.484 5 N -0.350 5.350 6 C -0.022 4.022 7 C -0.097 4.097 8 H 0.146 0.854 9 C -0.143 4.143 10 C -0.147 4.147 11 C -0.163 4.163 12 C 0.080 3.920 13 H 0.059 0.941 14 N -0.388 5.388 15 C -0.369 4.369 16 H 0.097 0.903 17 C -0.272 4.272 18 N -0.627 5.627 19 Si 0.802 3.198 20 H -0.201 1.201 21 H -0.226 1.226 22 H -0.203 1.203 23 C -0.102 4.102 24 H 0.080 0.920 25 C 0.004 3.996 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.204 0.796 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.029 -22.785 2.448 23.116 hybrid contribution -0.378 2.186 -0.179 2.225 sum 2.651 -20.600 2.269 20.893 Atomic orbital electron populations 1.21562 0.93604 1.02861 1.01529 1.21678 0.97897 0.89983 1.06834 1.21634 0.80208 0.93604 0.74920 1.90712 1.55947 1.49125 1.52571 1.48667 1.05900 1.08054 1.72415 1.22627 0.85009 0.90215 1.04344 1.22072 0.96946 0.92279 0.98423 0.85423 1.21602 0.97530 1.00676 0.94537 1.21396 0.98298 0.92919 1.02038 1.21711 0.99193 0.97942 0.97462 1.19289 0.93282 0.84194 0.95201 0.94094 1.43003 1.05777 1.03045 1.86988 1.19627 0.91535 0.86538 1.39169 0.90341 1.25606 0.96318 1.01260 1.04058 1.69856 1.07412 1.26054 1.59367 0.85205 0.77150 0.79047 0.78351 1.20128 1.22589 1.20251 1.21022 0.92404 0.96243 1.00559 0.92007 1.21506 0.93795 0.85111 0.99234 0.94082 0.88671 0.93990 0.86081 0.85956 0.88034 0.88608 0.88032 0.93796 0.90384 0.91133 0.94007 0.95164 0.79645 0.94256 0.95043 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.20 71.98 0.66 -2.01 16 2 C -0.12 -2.21 5.59 29.85 0.17 -2.04 16 3 C 0.50 15.80 7.84 87.66 0.69 16.49 16 4 O -0.60 -26.29 16.28 -3.03 -0.05 -26.34 16 5 N -0.62 -18.02 3.33 -814.02 -2.71 -20.73 16 6 C 0.10 1.70 5.91 86.91 0.51 2.22 16 7 C -0.08 -1.53 3.36 -10.13 -0.03 -1.56 16 8 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 9 C -0.11 -1.99 4.77 30.56 0.15 -1.84 16 10 C -0.11 -2.46 5.94 30.43 0.18 -2.28 16 11 C -0.12 -4.28 5.30 29.99 0.16 -4.12 16 12 C 0.19 7.32 2.57 43.40 0.11 7.43 16 13 H 0.04 1.61 8.06 -2.39 -0.02 1.59 16 14 N -0.75 -39.07 4.97 -330.59 -1.64 -40.72 16 15 C -0.24 -13.52 9.79 84.04 0.82 -12.70 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 17 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16 18 N -0.98 -63.50 13.06 21.65 0.28 -63.21 16 19 Si 0.97 47.81 29.55 68.60 2.03 49.84 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 23 C -0.08 -2.64 2.41 -11.64 -0.03 -2.67 16 24 H 0.06 2.05 8.13 -2.39 -0.02 2.03 16 25 C 0.13 4.89 4.70 86.45 0.41 5.29 16 26 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 29 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.17 7.70 -2.39 -0.02 1.15 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.04 1.02 7.95 -2.39 -0.02 1.00 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 38 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.37 21.40 5.67 -92.70 -0.53 20.88 16 40 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 41 H 0.03 1.50 7.54 -2.39 -0.02 1.48 16 42 H 0.04 1.75 8.05 -2.38 -0.02 1.73 16 Total: -1.00 -80.08 328.27 2.62 -77.45 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.46 Total: 25.87 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 4.26 Total: -2.16 kcal Atomic # 7 Polarization: -120.58 SS G_CDS: -4.07 Total: -124.66 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.05 Total: -26.34 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -80.08 2.62 -77.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992593904.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.597 kcal (2) G-P(sol) polarization free energy of solvation -80.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds