Wall clock time and date at job start Mon Mar 30 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46673 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99882 * 2 1 3 5 5 O 1.21279 * 120.00113 * 120.00322 * 4 2 1 6 6 N 1.34784 * 119.99961 * 300.00090 * 4 2 1 7 7 C 1.46494 * 119.99635 * 180.02562 * 6 4 2 8 8 H 1.09005 * 112.85456 * 336.19315 * 7 6 4 9 9 C 1.53780 * 113.61660 * 107.50699 * 7 6 4 10 10 C 1.53774 * 87.08267 * 89.11129 * 9 7 6 11 11 H 1.09000 * 113.61600 * 270.88639 * 10 9 7 12 12 N 1.46505 * 113.69195 * 139.99390 * 10 9 7 13 13 C 1.36935 * 120.00016 * 107.46044 * 12 10 9 14 14 H 1.08008 * 120.00248 * 0.02562 * 13 12 10 15 15 C 1.38812 * 120.00071 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99790 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00051 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47047 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47214 * 120.00190 * 17 15 13 20 20 H 1.48496 * 109.47379 * 240.00077 * 17 15 13 21 21 C 1.53782 * 87.08386 * 25.43475 * 10 9 7 22 22 C 1.52992 * 109.47195 * 240.00008 * 2 1 3 23 23 C 1.53000 * 117.50126 * 128.62332 * 22 2 1 24 24 C 1.52999 * 117.50242 * 59.99690 * 22 2 1 25 25 H 1.08998 * 109.47453 * 300.00086 * 1 2 3 26 26 H 1.08996 * 109.47248 * 60.00411 * 1 2 3 27 27 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46768 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46948 * 299.99772 * 3 2 1 30 30 H 1.08996 * 109.46989 * 60.00261 * 3 2 1 31 31 H 0.96995 * 120.00015 * 359.72695 * 6 4 2 32 32 H 1.08997 * 113.61467 * 203.66565 * 9 7 6 33 33 H 1.09000 * 113.60965 * 334.56513 * 9 7 6 34 34 H 0.96994 * 120.00197 * 287.46970 * 12 10 9 35 35 H 0.97004 * 119.99856 * 180.02562 * 16 15 13 36 36 H 1.09000 * 113.61415 * 220.01821 * 21 10 9 37 37 H 1.09000 * 113.68771 * 89.11987 * 21 10 9 38 38 H 1.09005 * 115.54834 * 274.32920 * 22 2 1 39 39 H 1.09006 * 117.49305 * 359.97438 * 23 22 2 40 40 H 1.08991 * 117.50073 * 145.01843 * 23 22 2 41 41 H 1.08998 * 117.50442 * 214.97818 * 24 22 2 42 42 H 1.09004 * 117.49725 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1955 -0.9402 3.6507 8 1 2.4391 -1.9864 3.4659 9 6 3.2980 -0.1717 4.3982 10 6 2.1730 0.5159 5.1896 11 1 1.8032 1.4275 4.7204 12 7 2.4761 0.6910 6.6123 13 6 2.7616 1.9370 7.1032 14 1 2.7629 2.7908 6.4417 15 6 3.0493 2.1028 8.4510 16 7 3.0482 1.0623 9.2570 17 14 3.4380 3.8027 9.1208 18 1 3.3735 4.7957 8.0185 19 1 2.4474 4.1608 10.1675 20 1 4.8015 3.8032 9.7089 21 6 1.3126 -0.7233 4.8911 22 6 2.0400 -0.7212 -1.2492 23 6 3.0742 0.0052 -2.1116 24 6 1.6357 -0.1496 -2.6096 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.1523 0.5411 2.5436 32 1 3.9361 -0.8089 5.0104 33 1 3.8635 0.5093 3.7622 34 1 2.4747 -0.0757 7.2064 35 1 3.2489 1.1782 10.1989 36 1 0.2753 -0.4876 4.6530 37 1 1.4069 -1.5120 5.6375 38 1 2.1267 -1.8045 -1.1641 39 1 3.3909 0.9971 -1.7892 40 1 3.8416 -0.6001 -2.5940 41 1 1.4569 -0.8566 -3.4196 42 1 1.0060 0.7401 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020487610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:18 Heat of formation + Delta-G solvation = -9.111975 kcal Electronic energy + Delta-G solvation = -20481.335509 eV Core-core repulsion = 17461.955367 eV Total energy + Delta-G solvation = -3019.380142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60803 -39.91302 -38.31085 -35.79337 -34.70575 -33.24852 -31.61755 -28.36716 -26.62634 -26.47133 -25.48012 -24.02907 -23.06438 -22.58413 -20.38849 -19.80889 -19.09683 -18.04218 -17.46630 -16.76073 -16.34405 -16.10304 -15.70237 -15.49524 -15.40307 -14.92249 -14.26976 -13.92955 -13.66791 -13.48540 -13.37470 -13.32232 -13.14826 -13.01715 -12.84206 -12.59826 -12.43536 -12.10302 -11.97469 -11.84908 -11.75348 -11.71239 -11.26264 -11.18623 -10.91414 -10.85592 -10.60021 -10.00600 -8.99417 -7.94920 -5.23598 1.48333 1.48942 1.58822 1.64199 2.13284 2.56704 2.96007 3.36843 3.59329 3.65464 3.71059 3.82875 3.95354 3.99324 4.10660 4.16540 4.31474 4.32190 4.34051 4.50394 4.70597 4.73400 4.81141 4.87843 4.89201 4.90038 4.96353 4.98840 5.06168 5.12285 5.20559 5.23143 5.27896 5.31231 5.34285 5.40047 5.51337 5.71649 6.27196 6.59158 7.27583 7.33367 8.09650 8.32176 9.28659 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034219 B = 0.003624 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.067223 B = 7723.619191 C = 8052.524552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.043 4.043 3 C -0.145 4.145 4 C 0.521 3.479 5 O -0.585 6.585 6 N -0.695 5.695 7 C 0.133 3.867 8 H 0.085 0.915 9 C -0.173 4.173 10 C 0.155 3.845 11 H 0.085 0.915 12 N -0.728 5.728 13 C -0.242 4.242 14 H 0.080 0.920 15 C -0.077 4.077 16 N -0.971 5.971 17 Si 0.972 3.028 18 H -0.263 1.263 19 H -0.293 1.293 20 H -0.297 1.297 21 C -0.142 4.142 22 C -0.151 4.151 23 C -0.190 4.190 24 C -0.154 4.154 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.412 0.588 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.374 0.626 35 H 0.251 0.749 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 0.343 -23.443 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.046 4.046 3 C -0.202 4.202 4 C 0.309 3.691 5 O -0.465 6.465 6 N -0.346 5.346 7 C 0.026 3.974 8 H 0.104 0.896 9 C -0.215 4.215 10 C 0.045 3.955 11 H 0.102 0.898 12 N -0.365 5.365 13 C -0.374 4.374 14 H 0.098 0.902 15 C -0.270 4.270 16 N -0.621 5.621 17 Si 0.801 3.199 18 H -0.187 1.187 19 H -0.221 1.221 20 H -0.224 1.224 21 C -0.182 4.182 22 C -0.170 4.170 23 C -0.226 4.226 24 C -0.191 4.191 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.250 0.750 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.206 0.794 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.584 -0.139 -23.498 24.403 hybrid contribution 0.530 0.383 1.249 1.409 sum -6.054 0.243 -22.249 23.059 Atomic orbital electron populations 1.21869 0.90401 1.02784 1.04306 1.20248 0.98254 0.96129 0.89942 1.22039 1.01271 0.92546 1.04348 1.21163 0.78860 0.83736 0.85346 1.90651 1.39815 1.28676 1.87316 1.45612 1.53007 1.31676 1.04349 1.21489 0.95505 0.96309 0.84101 0.89646 1.24144 0.98361 0.99978 0.98982 1.21943 0.93810 0.95849 0.83895 0.89756 1.42615 1.82355 1.06673 1.04864 1.19754 1.37643 0.87533 0.92506 0.90246 1.25583 1.03662 1.00835 0.96872 1.69826 1.57717 1.30416 1.04188 0.85089 0.76672 0.79902 0.78201 1.18744 1.22055 1.22428 1.23665 0.99415 0.99148 0.95928 1.21969 1.05567 0.98555 0.90879 1.23212 0.93180 1.02517 1.03720 1.23063 0.97263 1.03446 0.95303 0.90843 0.89166 0.92839 0.92825 0.88984 0.90963 0.75042 0.91416 0.92689 0.79422 0.94065 0.89412 0.89644 0.89517 0.87485 0.89442 0.88116 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.21 71.98 0.59 -1.22 16 2 C -0.04 -0.77 0.72 -52.93 -0.04 -0.81 16 3 C -0.14 -2.11 6.97 71.98 0.50 -1.61 16 4 C 0.52 13.80 6.48 87.66 0.57 14.37 16 5 O -0.58 -20.82 15.25 -3.03 -0.05 -20.87 16 6 N -0.70 -16.94 5.05 -440.03 -2.22 -19.16 16 7 C 0.13 3.94 4.32 45.52 0.20 4.14 16 8 H 0.09 2.78 7.46 -2.38 -0.02 2.76 16 9 C -0.17 -6.10 7.68 31.12 0.24 -5.86 16 10 C 0.15 5.77 4.35 45.51 0.20 5.96 16 11 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 12 N -0.73 -35.93 5.40 -320.44 -1.73 -37.66 16 13 C -0.24 -13.18 9.97 84.03 0.84 -12.35 16 14 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 15 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 16 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 17 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 21 C -0.14 -4.30 7.58 31.12 0.24 -4.07 16 22 C -0.15 -2.92 4.76 -10.80 -0.05 -2.97 16 23 C -0.19 -3.15 9.57 30.60 0.29 -2.86 16 24 C -0.15 -1.99 9.38 30.60 0.29 -1.70 16 25 H 0.07 0.82 7.57 -2.39 -0.02 0.80 16 26 H 0.09 0.82 7.29 -2.39 -0.02 0.81 16 27 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.05 0.93 6.98 -2.39 -0.02 0.92 16 29 H 0.09 0.92 7.07 -2.39 -0.02 0.91 16 30 H 0.07 0.94 7.56 -2.39 -0.02 0.92 16 31 H 0.41 7.86 7.54 -92.71 -0.70 7.17 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.37 19.97 7.93 -92.71 -0.73 19.24 16 35 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.09 2.73 8.12 -2.39 -0.02 2.72 16 38 H 0.09 2.16 7.47 -2.38 -0.02 2.14 16 39 H 0.11 1.61 5.85 -2.38 -0.01 1.60 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.11 1.04 7.07 -2.38 -0.02 1.02 16 Total: -1.00 -69.04 336.11 2.22 -66.82 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.42 Total: 35.13 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 4.32 Total: -12.90 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -3.67 Total: -115.75 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.87 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -69.04 2.22 -66.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020487610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.707 kcal (2) G-P(sol) polarization free energy of solvation -69.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds