Wall clock time and date at job start Mon Mar 30 2020 01:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47183 * 2 1 4 4 C 1.50697 * 109.46969 * 120.00697 * 2 1 3 5 5 O 1.21283 * 120.00521 * 119.72525 * 4 2 1 6 6 N 1.34784 * 119.99774 * 299.99631 * 4 2 1 7 7 C 1.46499 * 119.99893 * 179.72962 * 6 4 2 8 8 H 1.08994 * 112.84864 * 334.66269 * 7 6 4 9 9 C 1.53777 * 113.61575 * 105.86345 * 7 6 4 10 10 C 1.54054 * 86.98585 * 89.15829 * 9 7 6 11 11 H 1.09000 * 113.62033 * 139.97694 * 10 9 7 12 12 N 1.46497 * 113.61631 * 270.88453 * 10 9 7 13 13 C 1.36939 * 120.00092 * 252.49289 * 12 10 9 14 14 H 1.07990 * 120.00111 * 0.02562 * 13 12 10 15 15 C 1.38815 * 119.99725 * 179.97438 * 13 12 10 16 16 N 1.31620 * 119.99926 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00096 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47215 * 89.99678 * 17 15 13 19 19 H 1.48508 * 109.46816 * 209.99304 * 17 15 13 20 20 H 1.48491 * 109.47365 * 329.99496 * 17 15 13 21 21 C 1.53784 * 87.07794 * 25.43063 * 10 9 7 22 22 C 1.53003 * 109.47022 * 239.99933 * 2 1 3 23 23 C 1.53004 * 117.49674 * 128.61918 * 22 2 1 24 24 C 1.52996 * 60.00229 * 252.51282 * 23 22 2 25 25 H 1.08996 * 109.47277 * 299.99595 * 1 2 3 26 26 H 1.09003 * 109.47126 * 59.99575 * 1 2 3 27 27 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46893 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47310 * 299.99998 * 3 2 1 30 30 H 1.09006 * 109.46641 * 60.00125 * 3 2 1 31 31 H 0.97005 * 119.99846 * 359.72750 * 6 4 2 32 32 H 1.09001 * 113.61299 * 203.66029 * 9 7 6 33 33 H 1.09002 * 113.61342 * 334.56821 * 9 7 6 34 34 H 0.97005 * 119.99937 * 72.48995 * 12 10 9 35 35 H 0.96998 * 120.00424 * 180.02562 * 16 15 13 36 36 H 1.08996 * 113.61919 * 220.02286 * 21 10 9 37 37 H 1.08997 * 113.60971 * 89.11854 * 21 10 9 38 38 H 1.08996 * 115.55325 * 274.33384 * 22 2 1 39 39 H 1.09002 * 117.49855 * 0.02562 * 23 22 2 40 40 H 1.08999 * 117.49859 * 145.01990 * 23 22 2 41 41 H 1.08995 * 117.49648 * 252.50928 * 24 23 22 42 42 H 1.09006 * 117.49554 * 107.49260 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7254 -1.6995 1.1191 6 7 1.7067 -0.2501 2.4546 7 6 2.1901 -0.9443 3.6507 8 1 2.4038 -1.9979 3.4712 9 6 3.3225 -0.2013 4.3788 10 6 2.2230 0.5232 5.1785 11 1 2.4647 0.6544 6.2332 12 7 1.7518 1.7566 4.5438 13 6 2.0948 2.9727 5.0718 14 1 2.7130 3.0225 5.9559 15 6 1.6487 4.1413 4.4700 16 7 1.9780 5.3101 4.9778 17 14 0.5800 4.0552 2.9404 18 1 -0.8501 4.0078 3.3378 19 1 0.8207 5.2558 2.1001 20 1 0.9196 2.8337 2.1674 21 6 1.3268 -0.6948 4.8987 22 6 2.0400 -0.7213 -1.2493 23 6 3.0741 0.0052 -2.1117 24 6 1.6357 -0.1495 -2.6096 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9562 0.8901 31 1 1.1523 0.5409 2.5436 32 1 3.9497 -0.8513 4.9889 33 1 3.8994 0.4584 3.7305 34 1 1.1969 1.7119 3.7494 35 1 1.6660 6.1268 4.5576 36 1 0.2937 -0.4334 4.6699 37 1 1.4094 -1.4794 5.6507 38 1 2.1266 -1.8045 -1.1643 39 1 3.3914 0.9968 -1.7889 40 1 3.8415 -0.6000 -2.5942 41 1 1.4569 -0.8565 -3.4197 42 1 1.0064 0.7406 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022568021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:20 Heat of formation + Delta-G solvation = 22.849819 kcal Electronic energy + Delta-G solvation = -21557.862267 eV Core-core repulsion = 18539.868092 eV Total energy + Delta-G solvation = -3017.994175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.49177 -38.82051 -37.17683 -33.90983 -33.45262 -31.96491 -30.49272 -27.51023 -25.23961 -25.01782 -24.26576 -22.72138 -22.27295 -20.86630 -19.55096 -18.49985 -17.61262 -16.98286 -16.19593 -15.28464 -15.09255 -14.69366 -14.50180 -14.40903 -13.97037 -13.60781 -13.08120 -12.84754 -12.70875 -12.34217 -12.29853 -12.11945 -11.97153 -11.86627 -11.58460 -11.20792 -11.02302 -10.95499 -10.81329 -10.39994 -10.31603 -10.07650 -10.03701 -9.84628 -9.64552 -9.40828 -8.99869 -8.67370 -7.40980 -5.87933 -3.25268 2.83711 3.09809 3.24992 3.29820 3.34819 3.80871 4.43267 4.52309 4.63984 4.82770 4.91388 4.99134 5.04367 5.10555 5.22322 5.27348 5.36433 5.36916 5.54382 5.56157 5.64166 5.73415 5.76310 5.78572 5.81188 5.90959 6.02331 6.06611 6.10024 6.14321 6.17779 6.23294 6.33572 6.45342 6.59530 6.70291 6.97879 7.74890 7.88564 8.30671 8.44820 9.06222 9.78164 9.96262 11.29851 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.007500 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.697087 B = 3732.395851 C = 4801.025229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 C -0.160 4.160 4 C 0.529 3.471 5 O -0.545 6.545 6 N -0.703 5.703 7 C 0.120 3.880 8 H 0.092 0.908 9 C -0.185 4.185 10 C 0.169 3.831 11 H 0.075 0.925 12 N -0.727 5.727 13 C -0.246 4.246 14 H 0.094 0.906 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.878 3.122 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.271 1.271 21 C -0.168 4.168 22 C -0.127 4.127 23 C -0.182 4.182 24 C -0.179 4.179 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.400 0.600 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.354 0.646 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 -11.711 -10.595 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.055 4.055 3 C -0.217 4.217 4 C 0.315 3.685 5 O -0.422 6.422 6 N -0.356 5.356 7 C 0.015 3.985 8 H 0.110 0.890 9 C -0.226 4.226 10 C 0.058 3.942 11 H 0.093 0.907 12 N -0.369 5.369 13 C -0.376 4.376 14 H 0.112 0.888 15 C -0.190 4.190 16 N -0.576 5.576 17 Si 0.709 3.291 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.198 1.198 21 C -0.208 4.208 22 C -0.146 4.146 23 C -0.218 4.218 24 C -0.216 4.216 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.237 0.763 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.188 0.812 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.363 -12.168 -10.510 16.252 hybrid contribution -0.932 0.523 -1.089 1.526 sum -3.295 -11.645 -11.599 16.763 Atomic orbital electron populations 1.21848 0.92460 1.02601 1.02785 1.20245 0.96866 0.96163 0.92208 1.22277 1.02165 0.93525 1.03763 1.20366 0.79639 0.84090 0.84390 1.90633 1.38255 1.26537 1.86808 1.45903 1.53290 1.31335 1.05084 1.21836 0.96319 0.96475 0.83886 0.88952 1.24286 0.97969 1.00030 1.00364 1.21208 0.91825 0.84860 0.96312 0.90660 1.42562 1.60940 1.01820 1.31538 1.19114 1.27102 0.81676 1.09712 0.88827 1.24695 1.00410 0.95161 0.98764 1.69685 1.49500 0.96676 1.41776 0.86767 0.81155 0.77016 0.84117 1.20979 1.21454 1.19826 1.23874 0.99396 1.00481 0.97012 1.22027 1.03527 0.99619 0.89384 1.23132 0.92384 1.02586 1.03731 1.22966 0.98411 1.03179 0.97040 0.92122 0.91243 0.91906 0.91476 0.91472 0.90513 0.76285 0.90072 0.90972 0.81172 0.92922 0.91256 0.88713 0.86800 0.88103 0.89009 0.88918 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.21 37.16 0.31 -1.35 16 2 C -0.05 -0.71 0.72 -155.66 -0.11 -0.82 16 3 C -0.16 -2.28 6.97 37.16 0.26 -2.02 16 4 C 0.53 8.79 6.48 -10.98 -0.07 8.72 16 5 O -0.55 -10.44 15.26 5.56 0.08 -10.36 16 6 N -0.70 -11.57 4.91 -53.02 -0.26 -11.83 16 7 C 0.12 1.91 4.30 -67.12 -0.29 1.63 16 8 H 0.09 1.46 7.50 -51.93 -0.39 1.08 16 9 C -0.18 -3.13 7.70 -25.78 -0.20 -3.33 16 10 C 0.17 3.10 4.57 -66.97 -0.31 2.79 16 11 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 12 N -0.73 -16.02 4.99 -52.50 -0.26 -16.28 16 13 C -0.25 -6.61 10.45 -15.06 -0.16 -6.77 16 14 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 15 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 16 N -0.93 -28.19 13.97 55.49 0.78 -27.42 16 17 Si 0.88 20.32 27.74 -169.99 -4.71 15.60 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -5.44 3.74 56.52 0.21 -5.23 16 21 C -0.17 -2.49 7.58 -25.91 -0.20 -2.68 16 22 C -0.13 -1.62 4.76 -90.61 -0.43 -2.05 16 23 C -0.18 -2.09 9.57 -26.73 -0.26 -2.35 16 24 C -0.18 -1.83 9.38 -26.73 -0.25 -2.09 16 25 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 26 H 0.07 0.71 7.29 -51.93 -0.38 0.33 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.98 6.98 -51.93 -0.36 0.62 16 29 H 0.07 0.82 7.07 -51.93 -0.37 0.45 16 30 H 0.08 1.24 5.01 -51.93 -0.26 0.98 16 31 H 0.40 6.68 4.77 -40.82 -0.19 6.49 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.35 7.44 3.21 -40.82 -0.13 7.31 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.11 1.59 7.47 -51.93 -0.39 1.20 16 39 H 0.10 1.17 5.85 -51.93 -0.30 0.87 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 0.90 7.07 -51.93 -0.37 0.54 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -30.59 322.25 -7.98 -38.57 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -6.66 Total: 17.11 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.80 Total: -10.26 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.25 Total: -55.53 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.71 Total: 15.60 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.59 -7.98 -38.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022568021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.424 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds