Wall clock time and date at job start Mon Mar 30 2020 00:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47418 * 2 1 4 4 N 1.46898 * 109.47528 * 179.97438 * 3 2 1 5 5 C 1.50283 * 110.99536 * 70.54615 * 4 3 2 6 6 C 1.51049 * 101.85528 * 147.83286 * 5 4 3 7 7 H 1.08997 * 110.26840 * 67.98225 * 6 5 4 8 8 C 1.50261 * 125.92081 * 204.88141 * 6 5 4 9 9 N 1.49258 * 104.80340 * 142.62904 * 8 6 5 10 10 C 1.34774 * 126.11438 * 172.43063 * 9 8 6 11 11 O 1.21279 * 119.99870 * 179.97438 * 10 9 8 12 12 C 1.50698 * 120.00205 * 359.97438 * 10 9 8 13 13 C 1.50700 * 109.47294 * 180.02562 * 12 10 9 14 14 H 1.08006 * 119.99877 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00403 * 179.97438 * 13 12 10 16 16 N 1.31514 * 119.99877 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00142 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46810 * 90.00311 * 17 15 13 19 19 H 1.48496 * 109.46830 * 210.00284 * 17 15 13 20 20 H 1.48500 * 109.47139 * 330.00192 * 17 15 13 21 21 C 1.49754 * 107.76563 * 352.42790 * 9 8 6 22 22 C 1.50795 * 102.15625 * 334.61343 * 21 9 8 23 23 H 1.08998 * 110.18273 * 290.78792 * 22 21 9 24 24 C 1.49900 * 111.00300 * 189.99983 * 4 3 2 25 25 H 1.08996 * 109.47439 * 300.00031 * 1 2 3 26 26 H 1.09002 * 109.47356 * 59.99938 * 1 2 3 27 27 H 1.08999 * 109.47557 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46799 * 239.99737 * 2 1 3 29 29 H 1.09002 * 109.46852 * 120.00219 * 2 1 3 30 30 H 1.09003 * 109.47107 * 59.99366 * 3 2 1 31 31 H 1.09002 * 109.46907 * 300.00337 * 3 2 1 32 32 H 1.08998 * 110.95614 * 29.69206 * 5 4 3 33 33 H 1.09002 * 110.95393 * 265.96643 * 5 4 3 34 34 H 1.09005 * 110.36770 * 261.45951 * 8 6 5 35 35 H 1.08999 * 110.37453 * 23.79134 * 8 6 5 36 36 H 1.09003 * 109.46662 * 299.99860 * 12 10 9 37 37 H 1.08998 * 109.47535 * 59.99598 * 12 10 9 38 38 H 0.97002 * 120.00407 * 179.97438 * 16 15 13 39 39 H 1.08999 * 110.86128 * 216.44912 * 21 9 8 40 40 H 1.09000 * 111.04574 * 92.86298 * 21 9 8 41 41 H 1.08995 * 110.42521 * 127.05097 * 24 4 3 42 42 H 1.08997 * 110.52541 * 4.62543 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0481 0.9750 -1.3220 6 6 5.3275 1.7699 -1.4342 7 1 6.0460 1.4365 -0.6854 8 6 6.0282 2.1371 -2.7117 9 7 6.5538 3.5140 -2.4762 10 6 7.3757 4.2012 -3.2940 11 8 7.7357 5.3193 -2.9920 12 6 7.8474 3.5803 -4.5835 13 6 8.7489 4.5476 -5.3066 14 1 8.9589 5.5154 -4.8756 15 6 9.3056 4.1971 -6.5183 16 7 9.0495 3.0189 -7.0434 17 14 10.4224 5.3964 -7.4149 18 1 11.8277 5.1779 -6.9877 19 1 10.3103 5.1770 -8.8792 20 1 10.0169 6.7876 -7.0903 21 6 6.0046 3.9954 -1.1688 22 6 4.7383 3.1870 -1.0394 23 1 4.0081 3.5105 -1.7812 24 6 4.0462 2.8206 0.2436 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.3625 1.2235 -2.1322 33 1 4.2546 -0.0951 -1.3026 34 1 6.8483 1.4460 -2.9068 35 1 5.3244 2.1367 -3.5441 36 1 8.3975 2.6647 -4.3660 37 1 6.9869 3.3469 -5.2106 38 1 9.4408 2.7724 -7.8961 39 1 5.7820 5.0616 -1.2103 40 1 6.6910 3.7755 -0.3511 41 1 4.7567 2.8117 1.0701 42 1 3.2332 3.5168 0.4495 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:10 Heat of formation + Delta-G solvation = -16.474220 kcal Electronic energy + Delta-G solvation = -20404.608033 eV Core-core repulsion = 17384.908640 eV Total energy + Delta-G solvation = -3019.699393 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72162 -38.24857 -36.23685 -33.81871 -32.93159 -30.71080 -30.50221 -28.77369 -26.50423 -26.48491 -23.93639 -22.72504 -21.32741 -20.55255 -20.24036 -18.55282 -16.72737 -16.34779 -15.75912 -15.59825 -15.43287 -14.80986 -14.65884 -14.22901 -13.98170 -13.70673 -13.38348 -12.94938 -12.85912 -12.37561 -12.27542 -12.07156 -11.96192 -11.74896 -11.55914 -11.47418 -11.15957 -10.98294 -10.92280 -10.85276 -10.76117 -10.61022 -10.18642 -9.94322 -9.24867 -8.73541 -8.55151 -8.42987 -8.12735 -6.05247 -4.04775 3.35356 3.39412 3.41803 3.50636 3.57963 3.66059 3.80778 4.48463 4.59516 4.65796 4.79747 4.91574 4.98158 5.15523 5.18038 5.23810 5.28785 5.32717 5.38696 5.40189 5.49519 5.52090 5.58553 5.68203 5.74537 5.79041 5.83149 5.93029 5.96254 6.01170 6.09569 6.17755 6.23210 6.53708 6.76540 6.79920 7.20359 7.33945 7.96946 8.02941 8.39207 9.05795 9.20347 9.60144 11.07144 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039776 B = 0.003509 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.775956 B = 7978.380524 C = 8441.328520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.047 3.953 4 N -0.525 5.525 5 C 0.062 3.938 6 C -0.129 4.129 7 H 0.093 0.907 8 C 0.130 3.870 9 N -0.641 5.641 10 C 0.532 3.468 11 O -0.544 6.544 12 C 0.012 3.988 13 C -0.509 4.509 14 H 0.075 0.925 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.902 3.098 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.130 3.870 22 C -0.148 4.148 23 H 0.080 0.920 24 C 0.062 3.938 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.639 -7.503 14.294 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.082 4.082 4 N -0.249 5.249 5 C -0.065 4.065 6 C -0.149 4.149 7 H 0.111 0.889 8 C 0.007 3.993 9 N -0.380 5.380 10 C 0.325 3.675 11 O -0.420 6.420 12 C -0.027 4.027 13 C -0.547 4.547 14 H 0.093 0.907 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.729 3.271 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.007 3.993 22 C -0.168 4.168 23 H 0.098 0.902 24 C -0.065 4.065 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.177 -7.276 14.633 22.303 hybrid contribution 0.221 0.990 -1.217 1.584 sum -14.955 -6.286 13.416 21.052 Atomic orbital electron populations 1.21747 0.95754 1.01759 1.01719 1.21484 0.95203 0.96293 1.02754 1.22369 0.87664 0.97375 1.00756 1.65411 1.07691 1.21655 1.30163 1.22395 0.94143 0.99854 0.90121 1.22470 0.97461 0.95800 0.99121 0.88886 1.21017 0.98122 0.84339 0.95815 1.50167 1.50315 1.16279 1.21222 1.21835 0.75157 0.85161 0.85368 1.90543 1.56346 1.19947 1.75191 1.19211 0.97812 0.97755 0.87896 1.21188 1.27475 1.02038 1.04030 0.90726 1.25005 0.96795 0.95525 0.97261 1.69959 1.44906 1.20226 1.18970 0.86425 0.80781 0.81498 0.78373 1.20575 1.21249 1.19675 1.21209 0.92334 0.98605 0.87119 1.22749 0.97675 0.97252 0.99174 0.90174 1.22092 0.98846 0.88935 0.96642 0.92758 0.92866 0.92540 0.91932 0.91191 0.90892 0.94690 0.92738 0.89504 0.90444 0.91468 0.93509 0.93578 0.92905 0.90681 0.91679 0.89772 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.12 -0.89 6.00 -26.73 -0.16 -1.05 16 3 C 0.05 0.39 4.69 -3.83 -0.02 0.37 16 4 N -0.53 -5.09 5.30 -231.84 -1.23 -6.32 16 5 C 0.06 0.61 5.66 -2.91 -0.02 0.60 16 6 C -0.13 -1.49 2.97 -89.95 -0.27 -1.76 16 7 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 8 C 0.13 1.91 6.40 -3.88 -0.02 1.88 16 9 N -0.64 -11.82 3.43 -171.59 -0.59 -12.40 16 10 C 0.53 12.72 7.87 -10.99 -0.09 12.63 16 11 O -0.54 -14.79 15.79 5.56 0.09 -14.70 16 12 C 0.01 0.32 4.70 -29.04 -0.14 0.19 16 13 C -0.51 -15.06 8.92 -34.44 -0.31 -15.37 16 14 H 0.07 2.31 6.75 -52.48 -0.35 1.95 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 17 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.13 1.95 6.80 -3.33 -0.02 1.92 16 22 C -0.15 -1.74 2.92 -90.04 -0.26 -2.01 16 23 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 24 C 0.06 0.61 6.70 -3.48 -0.02 0.58 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.48 7.54 -51.92 -0.39 0.09 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.57 7.98 -51.93 -0.41 0.15 16 31 H 0.03 0.30 7.86 -51.93 -0.41 -0.10 16 32 H 0.05 0.54 7.72 -51.93 -0.40 0.14 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.56 7.59 -51.93 -0.39 0.16 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -32.54 335.35 -9.43 -41.96 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -7.41 Total: -3.96 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.06 Total: -1.11 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -1.08 Total: -44.60 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.09 Total: -14.70 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.54 -9.43 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.490 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds