Wall clock time and date at job start Mon Mar 30 2020 00:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47099 * 2 1 4 4 N 1.46503 * 109.47046 * 119.99598 * 2 1 3 5 5 C 1.46504 * 119.99846 * 111.21825 * 4 2 1 6 6 C 1.50694 * 109.47339 * 269.99927 * 5 4 2 7 7 H 1.08005 * 119.99782 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00160 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00019 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99826 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47432 * 90.00076 * 10 8 6 12 12 H 1.48509 * 109.46790 * 209.99991 * 10 8 6 13 13 H 1.48500 * 109.47139 * 329.99438 * 10 8 6 14 14 C 1.34778 * 120.00142 * 291.21715 * 4 2 1 15 15 O 1.21279 * 119.99831 * 185.58275 * 14 4 2 16 16 C 1.50690 * 120.00070 * 5.58750 * 14 4 2 17 17 H 1.09004 * 115.59588 * 17.94932 * 16 14 4 18 18 C 1.52364 * 117.52686 * 232.12316 * 16 14 4 19 19 H 1.08996 * 115.77139 * 145.65013 * 18 16 14 20 20 C 1.52244 * 119.60611 * 1.51100 * 18 16 14 21 21 N 1.46738 * 110.47582 * 310.55081 * 20 18 16 22 22 C 1.47170 * 110.33613 * 303.64758 * 21 20 18 23 23 C 1.52989 * 108.58954 * 76.11031 * 22 21 20 24 24 C 1.52408 * 60.52679 * 252.58222 * 18 16 14 25 25 H 1.09004 * 117.25192 * 252.58828 * 24 18 16 26 26 H 1.09008 * 109.47447 * 280.60168 * 1 2 3 27 27 H 1.09000 * 109.47587 * 40.60712 * 1 2 3 28 28 H 1.08999 * 109.47189 * 160.60948 * 1 2 3 29 29 H 1.08997 * 109.47442 * 239.99810 * 2 1 3 30 30 H 1.09007 * 109.47162 * 172.15557 * 3 2 1 31 31 H 1.09002 * 109.47188 * 292.15089 * 3 2 1 32 32 H 1.09005 * 109.47396 * 52.15160 * 3 2 1 33 33 H 1.09003 * 109.47134 * 30.00218 * 5 4 2 34 34 H 1.09007 * 109.46898 * 149.99794 * 5 4 2 35 35 H 0.97004 * 120.00255 * 179.97438 * 9 8 6 36 36 H 1.08992 * 109.30475 * 190.24132 * 20 18 16 37 37 H 1.09003 * 109.30062 * 70.85469 * 20 18 16 38 38 H 1.00904 * 111.00206 * 180.17088 * 21 20 18 39 39 H 1.08998 * 109.61465 * 195.84726 * 22 21 20 40 40 H 1.09003 * 109.61729 * 316.38377 * 22 21 20 41 41 H 1.09005 * 109.44033 * 65.93080 * 23 22 21 42 42 H 1.09005 * 109.44474 * 185.85635 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.6953 -1.9836 1.0705 6 6 1.6788 -3.0931 1.1526 7 1 0.6329 -2.8584 1.2848 8 6 2.0839 -4.4076 1.0579 9 7 3.3572 -4.6932 0.8954 10 14 0.8236 -5.7828 1.1591 11 1 0.3245 -6.0980 -0.2035 12 1 1.4559 -6.9913 1.7466 13 1 -0.3112 -5.3523 2.0147 14 6 1.8446 -0.1362 2.4124 15 8 2.3364 -0.6561 3.3916 16 6 1.0394 1.1294 2.5556 17 1 0.3869 1.3699 1.7163 18 6 1.6809 2.2913 3.3040 19 1 1.4266 3.2870 2.9408 20 6 3.0986 2.1494 3.8404 21 7 3.2389 0.8990 4.5955 22 6 2.2458 0.8424 5.6802 23 6 0.8812 0.5078 5.0749 24 6 0.5532 1.5059 3.9631 25 1 -0.4162 1.9977 4.0446 26 1 -0.3634 0.1891 1.0102 27 1 -0.3634 0.7802 -0.6689 28 1 -0.3633 -0.9694 -0.3412 29 1 1.8933 -0.5138 -0.8899 30 1 3.1209 1.4457 0.1403 31 1 1.7957 1.9142 -0.9518 32 1 1.5666 1.9953 0.8115 33 1 3.2098 -2.0325 0.1107 34 1 3.4200 -2.0943 1.8772 35 1 3.6422 -5.6181 0.8292 36 1 3.3225 2.9922 4.4942 37 1 3.8007 2.1474 3.0067 38 1 4.1755 0.7982 4.9573 39 1 2.5285 0.0698 6.3951 40 1 2.1965 1.8087 6.1821 41 1 0.9050 -0.5007 4.6617 42 1 0.1167 0.5644 5.8499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575690546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:10 Heat of formation + Delta-G solvation = 32.734079 kcal Electronic energy + Delta-G solvation = -22200.204502 eV Core-core repulsion = 19182.638941 eV Total energy + Delta-G solvation = -3017.565561 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35398 -37.60735 -35.37116 -33.84933 -32.78810 -30.72820 -30.67079 -27.16600 -26.72191 -25.52082 -23.60086 -22.91022 -21.87781 -20.54525 -18.29407 -17.89493 -16.67132 -16.32466 -15.54652 -15.08290 -14.70223 -14.46322 -14.10723 -13.58208 -13.44315 -13.14886 -13.04536 -12.59038 -12.34394 -12.14226 -12.09083 -11.94488 -11.65602 -11.37881 -11.15036 -10.99503 -10.75145 -10.69961 -10.41722 -10.23721 -10.19859 -9.90625 -9.58827 -9.43910 -9.40016 -8.38000 -8.32007 -7.57420 -7.10920 -5.92122 -3.96115 3.35541 3.41757 3.44026 3.48406 4.17654 4.28665 4.54025 4.61379 4.92863 5.05748 5.15050 5.35496 5.37228 5.41091 5.47196 5.57793 5.67393 5.68902 5.73770 5.85485 5.86032 5.94499 5.98938 6.08476 6.15019 6.15839 6.28533 6.30664 6.37578 6.41124 6.63028 6.76032 6.94787 7.31828 7.48347 7.66546 7.82712 7.86902 8.09421 8.40845 8.82106 9.07130 9.56423 9.72737 11.14979 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.007114 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.607136 B = 3935.092882 C = 4499.561800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.141 3.859 3 C -0.178 4.178 4 N -0.602 5.602 5 C 0.251 3.749 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.059 3.941 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 C 0.528 3.472 15 O -0.473 6.473 16 C -0.182 4.182 17 H 0.125 0.875 18 C -0.128 4.128 19 H 0.101 0.899 20 C 0.088 3.912 21 N -0.641 5.641 22 C 0.076 3.924 23 C -0.092 4.092 24 C -0.122 4.122 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.023 0.977 34 H 0.044 0.956 35 H 0.261 0.739 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.331 0.669 39 H 0.066 0.934 40 H 0.016 0.984 41 H 0.103 0.897 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 15.480 2.998 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.035 3.965 3 C -0.236 4.236 4 N -0.336 5.336 5 C 0.132 3.868 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.142 4.142 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 C 0.313 3.687 15 O -0.345 6.345 16 C -0.203 4.203 17 H 0.143 0.857 18 C -0.147 4.147 19 H 0.119 0.881 20 C -0.042 4.042 21 N -0.272 5.272 22 C -0.053 4.053 23 C -0.129 4.129 24 C -0.141 4.141 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.122 0.878 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.751 14.629 3.076 15.412 hybrid contribution -0.439 -0.073 0.305 0.539 sum -4.190 14.556 3.381 15.519 Atomic orbital electron populations 1.22465 0.96498 1.02021 1.01882 1.20797 0.93404 0.92202 0.90062 1.22649 1.01928 0.97068 1.01926 1.48168 1.58886 1.22269 1.04310 1.19151 0.92660 0.77515 0.97470 1.21514 0.94126 0.90885 1.49163 0.92618 1.24925 0.95200 0.98601 0.95483 1.69937 1.14358 1.18926 1.50400 0.86580 0.81588 0.81717 0.77998 1.20828 1.21251 1.19996 1.18976 0.81358 0.84811 0.83547 1.90714 1.46134 1.61610 1.36082 1.23075 1.03806 0.96861 0.96519 0.85748 1.21907 0.94358 0.94997 1.03468 0.88088 1.21191 0.94693 0.90751 0.97537 1.60867 1.06670 1.33684 1.25938 1.21702 0.93541 0.98017 0.92060 1.21322 0.95048 1.01204 0.95365 1.22273 0.97166 1.00791 0.93898 0.88251 0.91848 0.92914 0.91861 0.89934 0.92572 0.92646 0.90997 0.95851 0.93840 0.92965 0.95900 0.91030 0.85103 0.91522 0.96545 0.87848 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 8.88 37.15 0.33 -2.32 16 2 C 0.14 2.44 3.28 -67.93 -0.22 2.22 16 3 C -0.18 -2.48 8.65 37.16 0.32 -2.16 16 4 N -0.60 -13.01 2.41 -167.47 -0.40 -13.41 16 5 C 0.25 6.70 5.20 -5.19 -0.03 6.67 16 6 C -0.52 -14.83 9.39 -34.44 -0.32 -15.16 16 7 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 10 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.53 10.92 6.08 -10.99 -0.07 10.86 16 15 O -0.47 -11.11 9.58 5.56 0.05 -11.06 16 16 C -0.18 -2.89 3.07 -91.79 -0.28 -3.17 16 17 H 0.13 1.80 3.72 -51.93 -0.19 1.61 16 18 C -0.13 -1.75 5.62 -91.63 -0.52 -2.26 16 19 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 20 C 0.09 1.24 6.09 -4.30 -0.03 1.21 16 21 N -0.64 -10.36 3.49 -114.13 -0.40 -10.76 16 22 C 0.08 1.14 6.31 -3.68 -0.02 1.11 16 23 C -0.09 -1.46 5.57 -26.75 -0.15 -1.61 16 24 C -0.12 -1.77 6.27 -90.63 -0.57 -2.34 16 25 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.06 1.00 5.23 -51.92 -0.27 0.73 16 27 H 0.05 0.65 7.99 -51.93 -0.42 0.23 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.49 7.76 -51.93 -0.40 1.09 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.95 4.08 -51.93 -0.21 0.73 16 33 H 0.02 0.64 7.86 -51.93 -0.41 0.23 16 34 H 0.04 1.31 7.35 -51.93 -0.38 0.92 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.02 0.28 8.13 -51.93 -0.42 -0.14 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.33 4.92 8.90 -39.29 -0.35 4.57 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.22 7.97 -51.93 -0.41 -0.19 16 41 H 0.10 2.07 5.70 -51.93 -0.30 1.78 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -31.78 315.44 -8.62 -40.40 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.69 Total: 4.55 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.65 Total: -5.33 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.07 Total: -50.52 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.05 Total: -11.06 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.78 -8.62 -40.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575690546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.138 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds