Wall clock time and date at job start Mon Mar 30 2020 00:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47099 * 2 1 4 4 N 1.46503 * 109.47046 * 119.99598 * 2 1 3 5 5 C 1.46504 * 119.99846 * 111.21825 * 4 2 1 6 6 C 1.50694 * 109.47339 * 269.99927 * 5 4 2 7 7 H 1.08005 * 119.99782 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00160 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00019 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99826 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47432 * 90.00076 * 10 8 6 12 12 H 1.48509 * 109.46790 * 209.99991 * 10 8 6 13 13 H 1.48500 * 109.47139 * 329.99438 * 10 8 6 14 14 C 1.34778 * 120.00142 * 291.21715 * 4 2 1 15 15 O 1.21279 * 119.99831 * 185.58275 * 14 4 2 16 16 C 1.50690 * 120.00070 * 5.58750 * 14 4 2 17 17 H 1.09004 * 115.59588 * 17.94932 * 16 14 4 18 18 C 1.52364 * 117.52686 * 232.12316 * 16 14 4 19 19 H 1.08996 * 115.77139 * 145.65013 * 18 16 14 20 20 C 1.52244 * 119.60611 * 1.51100 * 18 16 14 21 21 N 1.46738 * 110.47582 * 310.55081 * 20 18 16 22 22 C 1.47170 * 110.33613 * 303.64758 * 21 20 18 23 23 C 1.52989 * 108.58954 * 76.11031 * 22 21 20 24 24 C 1.52408 * 60.52679 * 252.58222 * 18 16 14 25 25 H 1.09004 * 117.25192 * 252.58828 * 24 18 16 26 26 H 1.09008 * 109.47447 * 280.60168 * 1 2 3 27 27 H 1.09000 * 109.47587 * 40.60712 * 1 2 3 28 28 H 1.08999 * 109.47189 * 160.60948 * 1 2 3 29 29 H 1.08997 * 109.47442 * 239.99810 * 2 1 3 30 30 H 1.09007 * 109.47162 * 172.15557 * 3 2 1 31 31 H 1.09002 * 109.47188 * 292.15089 * 3 2 1 32 32 H 1.09005 * 109.47396 * 52.15160 * 3 2 1 33 33 H 1.09003 * 109.47134 * 30.00218 * 5 4 2 34 34 H 1.09007 * 109.46898 * 149.99794 * 5 4 2 35 35 H 0.97004 * 120.00255 * 179.97438 * 9 8 6 36 36 H 1.08992 * 109.30475 * 190.24132 * 20 18 16 37 37 H 1.09003 * 109.30062 * 70.85469 * 20 18 16 38 38 H 1.00904 * 111.00206 * 180.17088 * 21 20 18 39 39 H 1.08998 * 109.61465 * 195.84726 * 22 21 20 40 40 H 1.09003 * 109.61729 * 316.38377 * 22 21 20 41 41 H 1.09005 * 109.44033 * 65.93080 * 23 22 21 42 42 H 1.09005 * 109.44474 * 185.85635 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.6953 -1.9836 1.0705 6 6 1.6788 -3.0931 1.1526 7 1 0.6329 -2.8584 1.2848 8 6 2.0839 -4.4076 1.0579 9 7 3.3572 -4.6932 0.8954 10 14 0.8236 -5.7828 1.1591 11 1 0.3245 -6.0980 -0.2035 12 1 1.4559 -6.9913 1.7466 13 1 -0.3112 -5.3523 2.0147 14 6 1.8446 -0.1362 2.4124 15 8 2.3364 -0.6561 3.3916 16 6 1.0394 1.1294 2.5556 17 1 0.3869 1.3699 1.7163 18 6 1.6809 2.2913 3.3040 19 1 1.4266 3.2870 2.9408 20 6 3.0986 2.1494 3.8404 21 7 3.2389 0.8990 4.5955 22 6 2.2458 0.8424 5.6802 23 6 0.8812 0.5078 5.0749 24 6 0.5532 1.5059 3.9631 25 1 -0.4162 1.9977 4.0446 26 1 -0.3634 0.1891 1.0102 27 1 -0.3634 0.7802 -0.6689 28 1 -0.3633 -0.9694 -0.3412 29 1 1.8933 -0.5138 -0.8899 30 1 3.1209 1.4457 0.1403 31 1 1.7957 1.9142 -0.9518 32 1 1.5666 1.9953 0.8115 33 1 3.2098 -2.0325 0.1107 34 1 3.4200 -2.0943 1.8772 35 1 3.6422 -5.6181 0.8292 36 1 3.3225 2.9922 4.4942 37 1 3.8007 2.1474 3.0067 38 1 4.1755 0.7982 4.9573 39 1 2.5285 0.0698 6.3951 40 1 2.1965 1.8087 6.1821 41 1 0.9050 -0.5007 4.6617 42 1 0.1167 0.5644 5.8499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575690546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:09 Heat of formation + Delta-G solvation = 12.460721 kcal Electronic energy + Delta-G solvation = -22201.083621 eV Core-core repulsion = 19182.638941 eV Total energy + Delta-G solvation = -3018.444680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.68694 -39.03311 -36.91721 -35.31691 -34.69391 -32.39550 -31.88494 -29.07537 -27.92835 -26.93645 -25.22160 -24.12161 -23.56744 -21.94126 -19.56902 -19.14910 -18.58612 -17.94248 -17.16542 -16.49855 -16.24469 -16.05504 -15.61444 -15.03787 -14.75489 -14.52885 -14.37935 -14.02634 -13.85782 -13.62541 -13.35695 -13.29616 -13.12891 -13.04593 -12.70196 -12.64726 -12.40965 -12.28307 -12.06731 -11.81220 -11.57331 -11.51609 -11.35808 -10.73503 -10.60134 -10.56119 -9.90317 -9.13447 -8.56413 -8.13791 -6.30293 1.35364 1.38232 1.48625 2.08330 2.38406 2.65317 3.02668 3.11705 3.47848 3.74821 3.83621 4.01527 4.09459 4.25084 4.29052 4.35991 4.49334 4.53653 4.57096 4.62281 4.76323 4.83100 4.89164 4.93276 4.97323 5.01297 5.05641 5.12464 5.15413 5.16412 5.28628 5.38263 5.40458 5.53658 5.64738 5.70818 6.10905 6.22602 6.38610 6.67450 6.80387 7.20248 7.37358 8.02520 8.90025 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.007114 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.607136 B = 3935.092882 C = 4499.561800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 C -0.165 4.165 4 N -0.613 5.613 5 C 0.271 3.729 6 C -0.530 4.530 7 H 0.050 0.950 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.964 3.036 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.273 1.273 14 C 0.516 3.484 15 O -0.511 6.511 16 C -0.194 4.194 17 H 0.146 0.854 18 C -0.109 4.109 19 H 0.143 0.857 20 C 0.083 3.917 21 N -0.672 5.672 22 C 0.079 3.921 23 C -0.095 4.095 24 C -0.119 4.119 25 H 0.134 0.866 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.004 0.996 34 H -0.004 1.004 35 H 0.264 0.736 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.332 0.668 39 H 0.055 0.945 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 18.074 2.836 19.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 C -0.223 4.223 4 N -0.347 5.347 5 C 0.149 3.851 6 C -0.569 4.569 7 H 0.068 0.932 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.788 3.212 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.198 1.198 14 C 0.304 3.696 15 O -0.386 6.386 16 C -0.215 4.215 17 H 0.163 0.837 18 C -0.128 4.128 19 H 0.161 0.839 20 C -0.046 4.046 21 N -0.304 5.304 22 C -0.050 4.050 23 C -0.133 4.133 24 C -0.138 4.138 25 H 0.152 0.848 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.022 0.978 34 H 0.014 0.986 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.031 17.262 2.895 18.513 hybrid contribution 0.339 -0.899 0.381 1.034 sum -5.692 16.363 3.277 17.632 Atomic orbital electron populations 1.22386 0.94645 1.02242 1.02747 1.21095 0.94901 0.93788 0.87580 1.22539 1.00829 0.94541 1.04358 1.48203 1.59017 1.20897 1.06621 1.18513 0.91785 0.80406 0.94355 1.21738 0.94043 0.91935 1.49212 0.93189 1.25845 0.97306 1.01300 0.94882 1.70068 1.16343 1.19673 1.51035 0.85478 0.78796 0.78214 0.78687 1.19078 1.20691 1.19765 1.19856 0.81166 0.86117 0.82428 1.90711 1.47613 1.63075 1.37152 1.22916 1.04706 0.95368 0.98473 0.83672 1.22156 0.93567 0.95696 1.01378 0.83945 1.21284 0.95158 0.90677 0.97505 1.60789 1.06999 1.35632 1.26935 1.21669 0.92827 0.98839 0.91661 1.21261 0.96359 0.99090 0.96592 1.22469 0.99121 1.00393 0.91800 0.84838 0.91932 0.88686 0.94236 0.91687 0.94164 0.89340 0.89456 0.97796 0.98587 0.92679 0.93227 0.92020 0.85065 0.92639 0.94055 0.92795 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.74 8.88 71.98 0.64 -4.10 16 2 C 0.13 4.47 3.28 44.99 0.15 4.61 16 3 C -0.17 -4.20 8.65 71.98 0.62 -3.58 16 4 N -0.61 -27.47 2.41 -802.16 -1.93 -29.40 16 5 C 0.27 15.42 5.20 85.63 0.45 15.86 16 6 C -0.53 -31.74 9.39 25.60 0.24 -31.50 16 7 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 8 C 0.00 0.29 5.46 84.66 0.46 0.75 16 9 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 10 Si 0.96 46.51 29.54 68.60 2.03 48.54 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 14 C 0.52 21.81 6.08 87.65 0.53 22.34 16 15 O -0.51 -25.26 9.58 -3.03 -0.03 -25.29 16 16 C -0.19 -5.73 3.07 -11.55 -0.04 -5.77 16 17 H 0.15 3.65 3.72 -2.38 -0.01 3.64 16 18 C -0.11 -2.55 5.62 -11.45 -0.06 -2.62 16 19 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 20 C 0.08 2.16 6.09 86.08 0.52 2.68 16 21 N -0.67 -21.84 3.49 -515.00 -1.80 -23.64 16 22 C 0.08 2.31 6.31 86.25 0.54 2.86 16 23 C -0.10 -2.94 5.57 30.58 0.17 -2.77 16 24 C -0.12 -3.06 6.27 -10.80 -0.07 -3.13 16 25 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.06 1.84 5.23 -2.38 -0.01 1.83 16 27 H 0.09 1.96 7.99 -2.39 -0.02 1.94 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 2.41 7.76 -2.39 -0.02 2.39 16 30 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.96 4.08 -2.38 -0.01 1.95 16 33 H 0.00 0.24 7.86 -2.39 -0.02 0.22 16 34 H 0.00 -0.26 7.35 -2.38 -0.02 -0.28 16 35 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.05 1.04 8.13 -2.39 -0.02 1.03 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 38 H 0.33 10.20 8.90 -89.69 -0.80 9.40 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.00 7.97 -2.39 -0.02 0.98 16 41 H 0.05 2.24 5.70 -2.38 -0.01 2.23 16 42 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -74.25 315.44 2.93 -71.32 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.22 Total: 20.88 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 4.16 Total: -4.35 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -3.44 Total: -111.10 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.03 Total: -25.29 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -74.25 2.93 -71.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575690546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.778 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds